RNA–Protein interactions for RNA: ENST00000466058.1

KDM3A-209, Transcript of lysine demethylase 3A, humanhuman

TSL 4

Gene KDM3A, Length 448 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-209ENST00000466058 AEBP2Q6ZN18 517 aaPredicted RBP16.96■□□□□ 0.31
KDM3A-209ENST00000466058 CHIC1Q5VXU3 224 aa16.45■□□□□ 0.22
KDM3A-209ENST00000466058 SENP3Q9H4L4 574 aaPredicted RBP14.76□□□□□ -0.05
KDM3A-209ENST00000466058 NISCHQ9Y2I1 1504 aa14.62□□□□□ -0.07
KDM3A-209ENST00000466058 ABCC9O60706 1549 aa14.51□□□□□ -0.09
KDM3A-209ENST00000466058 PHF23Q9BUL5 403 aaPredicted RBP14.45□□□□□ -0.1
KDM3A-209ENST00000466058 DNAJC5BQ9UF47 199 aa14.44□□□□□ -0.1
KDM3A-209ENST00000466058 DNAJC5Q9H3Z4 198 aa13.84□□□□□ -0.19
KDM3A-209ENST00000466058 FOXD1Q16676 465 aa13.53□□□□□ -0.24
KDM3A-209ENST00000466058 CCDC180Q9P1Z9 1646 aa13.47□□□□□ -0.25
KDM3A-209ENST00000466058 PABPN1Q86U42 306 aaKnown RBP eCLIP13.41□□□□□ -0.26
KDM3A-209ENST00000466058 PLPPR3Q6T4P5 718 aa13.35□□□□□ -0.27
KDM3A-209ENST00000466058 RB1CC1Q8TDY2 1594 aa13.3□□□□□ -0.28
KDM3A-209ENST00000466058 CECR2Q9BXF3 1484 aa13.1□□□□□ -0.31
KDM3A-209ENST00000466058 UNC13AQ9UPW8 1703 aa13.1□□□□□ -0.31
KDM3A-209ENST00000466058 TRIM41Q8WV44 630 aa13.01□□□□□ -0.33
KDM3A-209ENST00000466058 CC2D2AQ9P2K1 1620 aa13.01□□□□□ -0.33
KDM3A-209ENST00000466058 BICRAQ9NZM4 1560 aa12.98□□□□□ -0.33
KDM3A-209ENST00000466058 NACADO15069 1562 aa12.95□□□□□ -0.34
KDM3A-209ENST00000466058 DCAF8L2P0C7V8 631 aa12.95□□□□□ -0.34
KDM3A-209ENST00000466058 MSH5O43196 834 aa12.85□□□□□ -0.35
KDM3A-209ENST00000466058 PIAS4Q8N2W9 510 aaPredicted RBP12.84□□□□□ -0.35
KDM3A-209ENST00000466058 CUX2O14529 1486 aa12.75□□□□□ -0.37
KDM3A-209ENST00000466058 ADRA2BP18089 450 aa12.73□□□□□ -0.37
KDM3A-209ENST00000466058 EIF4G1Q04637 1599 aaKnown RBP12.73□□□□□ -0.37
KDM3A-209ENST00000466058 PPP6R1Q9UPN7 881 aa12.66□□□□□ -0.38
KDM3A-209ENST00000466058 ERCC6Q03468 1493 aa12.56□□□□□ -0.4
KDM3A-209ENST00000466058 SHROOM4Q9ULL8 1493 aa12.53□□□□□ -0.4
KDM3A-209ENST00000466058 MYO15BQ96JP2 1530 aa12.37□□□□□ -0.43
KDM3A-209ENST00000466058 SCRIBQ14160 1630 aa12.36□□□□□ -0.43
KDM3A-209ENST00000466058 NESP48681 1621 aa12.21□□□□□ -0.46
KDM3A-209ENST00000466058 THOC2Q8NI27 1593 aaKnown RBP12.19□□□□□ -0.46
KDM3A-209ENST00000466058 TRHP20396 242 aaPredicted RBP12.14□□□□□ -0.47
KDM3A-209ENST00000466058 SMARCA2P51531 1590 aa12.1□□□□□ -0.47
KDM3A-209ENST00000466058 ILDR1Q86SU0 546 aaPredicted RBP12.09□□□□□ -0.47
KDM3A-209ENST00000466058 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
KDM3A-209ENST00000466058 BAZ1AQ9NRL2 1556 aaPredicted RBP12.08□□□□□ -0.48
KDM3A-209ENST00000466058 RIMBP3CA6NJZ7 1639 aa12.06□□□□□ -0.48
KDM3A-209ENST00000466058 RIMBP3BA6NNM3 1639 aa12.06□□□□□ -0.48
KDM3A-209ENST00000466058 RIMBP3Q9UFD9 1639 aa12.06□□□□□ -0.48
KDM3A-209ENST00000466058 POTEDQ86YR6 584 aa12.03□□□□□ -0.48
KDM3A-209ENST00000466058 KIF21AQ7Z4S6 1674 aa12.01□□□□□ -0.49
KDM3A-209ENST00000466058 SCAF1Q9H7N4 1312 aaKnown RBP11.99□□□□□ -0.49
KDM3A-209ENST00000466058 NCAPD3P42695 1498 aa11.97□□□□□ -0.49
KDM3A-209ENST00000466058 CYB5RLQ6IPT4 315 aa11.95□□□□□ -0.5
KDM3A-209ENST00000466058 DCAF1Q9Y4B6 1507 aa11.91□□□□□ -0.5
KDM3A-209ENST00000466058 ZCCHC6Q5VYS8 1495 aaKnown RBP11.9□□□□□ -0.5
KDM3A-209ENST00000466058 ARHGEF11O15085 1522 aa11.89□□□□□ -0.51
KDM3A-209ENST00000466058 LAMC3Q9Y6N6 1575 aa11.86□□□□□ -0.51
KDM3A-209ENST00000466058 ATAD2BQ9ULI0 1458 aa11.85□□□□□ -0.51
KDM3A-209ENST00000466058 PDS5BQ9NTI5 1447 aa11.84□□□□□ -0.51
KDM3A-209ENST00000466058 MRC2Q9UBG0 1479 aa11.8□□□□□ -0.52
KDM3A-209ENST00000466058 HMGXB3Q12766 1538 aa11.79□□□□□ -0.52
KDM3A-209ENST00000466058 WDR62O43379 1518 aa11.77□□□□□ -0.52
KDM3A-209ENST00000466058 ARAP1Q96P48 1450 aa11.72□□□□□ -0.53
KDM3A-209ENST00000466058 BAZ1BQ9UIG0 1483 aaKnown RBP11.7□□□□□ -0.54
KDM3A-209ENST00000466058 DMRT2Q9Y5R5 561 aa11.64□□□□□ -0.55
KDM3A-209ENST00000466058 PPP4R3CPQ6ZMV5 832 aa11.63□□□□□ -0.55
KDM3A-209ENST00000466058 SMARCA4P51532 1647 aa11.62□□□□□ -0.55
KDM3A-209ENST00000466058 CADPSQ9ULU8 1353 aa11.6□□□□□ -0.55
KDM3A-209ENST00000466058 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
KDM3A-209ENST00000466058 MAPK8IP2Q13387 824 aaPredicted RBP11.57□□□□□ -0.56
KDM3A-209ENST00000466058 CHD1O14646 1710 aa11.52□□□□□ -0.57
KDM3A-209ENST00000466058 ZNF608Q9ULD9 1512 aaPredicted RBP11.51□□□□□ -0.57
KDM3A-209ENST00000466058 FANCD2Q9BXW9 1451 aa11.5□□□□□ -0.57
KDM3A-209ENST00000466058 KDM4FA0A1W2PPD8 638 aa11.48□□□□□ -0.57
KDM3A-209ENST00000466058 FBLN2P98095 1184 aa11.48□□□□□ -0.57
KDM3A-209ENST00000466058 URB2Q14146 1524 aaKnown RBP11.48□□□□□ -0.57
KDM3A-209ENST00000466058 RSF1Q96T23 1441 aaPredicted RBP11.46□□□□□ -0.57
KDM3A-209ENST00000466058 NCBP3Q53F19 620 aaKnown RBP11.46□□□□□ -0.57
KDM3A-209ENST00000466058 CNKSR2Q8WXI2 1034 aa11.45□□□□□ -0.58
KDM3A-209ENST00000466058 PEG3Q9GZU2 1588 aa11.42□□□□□ -0.58
KDM3A-209ENST00000466058 LMTK3Q96Q04 1460 aa11.39□□□□□ -0.59
KDM3A-209ENST00000466058 EIF4G3O43432 1585 aaKnown RBP11.37□□□□□ -0.59
KDM3A-209ENST00000466058 FBXO41Q8TF61 875 aa11.37□□□□□ -0.59
KDM3A-209ENST00000466058 IFT140Q96RY7 1462 aa11.36□□□□□ -0.59
KDM3A-209ENST00000466058 KCNA4P22459 653 aa11.33□□□□□ -0.6
KDM3A-209ENST00000466058 ERCC6L2Q5T890 1561 aa11.32□□□□□ -0.6
KDM3A-209ENST00000466058 SOCS7O14512 581 aa11.31□□□□□ -0.6
KDM3A-209ENST00000466058 MROH2BQ7Z745 1585 aa11.31□□□□□ -0.6
KDM3A-209ENST00000466058 AQRO60306 1485 aaKnown RBP eCLIP11.31□□□□□ -0.63e-6■■□□□ 14.2
KDM3A-209ENST00000466058 ILDR2Q71H61 639 aa11.3□□□□□ -0.6
KDM3A-209ENST00000466058 HECW2Q9P2P5 1572 aa11.29□□□□□ -0.6
KDM3A-209ENST00000466058 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
KDM3A-209ENST00000466058 RNF216Q9NWF9 866 aaPredicted RBP11.29□□□□□ -0.6
KDM3A-209ENST00000466058 KIF13AQ9H1H9 1805 aa11.29□□□□□ -0.6
KDM3A-209ENST00000466058 GAPVD1Q14C86 1478 aa11.26□□□□□ -0.61
KDM3A-209ENST00000466058 CLASP1Q7Z460 1538 aa11.26□□□□□ -0.61
KDM3A-209ENST00000466058 CFTRP13569 1480 aa11.25□□□□□ -0.61
KDM3A-209ENST00000466058 HOXD11P31277 338 aaPredicted RBP11.25□□□□□ -0.61
KDM3A-209ENST00000466058 SYNJ1O43426 1573 aa11.19□□□□□ -0.62
KDM3A-209ENST00000466058 TOPBP1Q92547 1522 aa11.18□□□□□ -0.62
KDM3A-209ENST00000466058 WIZO95785 1651 aa11.17□□□□□ -0.62
KDM3A-209ENST00000466058 DISP3Q9P2K9 1392 aa11.17□□□□□ -0.62
KDM3A-209ENST00000466058 CHMP7Q8WUX9 453 aaPredicted RBP11.17□□□□□ -0.62
KDM3A-209ENST00000466058 KDM6BO15054 1643 aa11.17□□□□□ -0.62
KDM3A-209ENST00000466058 SYNJ2O15056 1496 aa11.16□□□□□ -0.62
KDM3A-209ENST00000466058 ADGRL1O94910 1474 aa11.14□□□□□ -0.63
KDM3A-209ENST00000466058 TARBP1Q13395 1621 aaKnown RBP11.14□□□□□ -0.63
KDM3A-209ENST00000466058 FAM69CQ0P6D2 419 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms