RNA–Protein interactions for RNA: ENST00000465721.1

CNOT4-208, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 4

Gene CNOT4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-208ENST00000465721 NISCHQ9Y2I1 1504 aa30.2■■■□□ 2.42
CNOT4-208ENST00000465721 ABCC9O60706 1549 aa27.39■■□□□ 1.98
CNOT4-208ENST00000465721 CCDC180Q9P1Z9 1646 aa27.34■■□□□ 1.97
CNOT4-208ENST00000465721 RB1CC1Q8TDY2 1594 aa26.03■■□□□ 1.76
CNOT4-208ENST00000465721 DNAJC5BQ9UF47 199 aa25.85■■□□□ 1.73
CNOT4-208ENST00000465721 NACADO15069 1562 aa25.79■■□□□ 1.72
CNOT4-208ENST00000465721 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
CNOT4-208ENST00000465721 MYO15BQ96JP2 1530 aa25.38■■□□□ 1.65
CNOT4-208ENST00000465721 PABPN1Q86U42 306 aaKnown RBP eCLIP25.37■■□□□ 1.65
CNOT4-208ENST00000465721 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
CNOT4-208ENST00000465721 DCAF8L2P0C7V8 631 aa25.34■■□□□ 1.65
CNOT4-208ENST00000465721 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
CNOT4-208ENST00000465721 DCAF1Q9Y4B6 1507 aa24.96■■□□□ 1.59
CNOT4-208ENST00000465721 SHROOM4Q9ULL8 1493 aa24.96■■□□□ 1.59
CNOT4-208ENST00000465721 SCRIBQ14160 1630 aa24.82■■□□□ 1.56
CNOT4-208ENST00000465721 CC2D2AQ9P2K1 1620 aa24.81■■□□□ 1.56
CNOT4-208ENST00000465721 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.55
CNOT4-208ENST00000465721 EIF4G1Q04637 1599 aaKnown RBP24.7■■□□□ 1.54
CNOT4-208ENST00000465721 AEBP2Q6ZN18 517 aaPredicted RBP24.12■■□□□ 1.45
CNOT4-208ENST00000465721 DNAJC5Q9H3Z4 198 aa23.89■■□□□ 1.41
CNOT4-208ENST00000465721 CHIC1Q5VXU3 224 aa23.85■■□□□ 1.41
CNOT4-208ENST00000465721 NCAPD3P42695 1498 aa23.77■■□□□ 1.4
CNOT4-208ENST00000465721 CUX2O14529 1486 aa23.75■■□□□ 1.39
CNOT4-208ENST00000465721 SMARCA4P51532 1647 aa23.67■■□□□ 1.38
CNOT4-208ENST00000465721 ATAD2BQ9ULI0 1458 aa23.67■■□□□ 1.38
CNOT4-208ENST00000465721 HMGXB3Q12766 1538 aa23.65■■□□□ 1.38
CNOT4-208ENST00000465721 ERCC6Q03468 1493 aa23.64■■□□□ 1.38
CNOT4-208ENST00000465721 SMARCA2P51531 1590 aa23.62■■□□□ 1.37
CNOT4-208ENST00000465721 NESP48681 1621 aa23.5■■□□□ 1.35
CNOT4-208ENST00000465721 BAZ1AQ9NRL2 1556 aaPredicted RBP23.47■■□□□ 1.35
CNOT4-208ENST00000465721 PEG3Q9GZU2 1588 aa23.45■■□□□ 1.34
CNOT4-208ENST00000465721 BAZ1BQ9UIG0 1483 aaKnown RBP23.43■■□□□ 1.34
CNOT4-208ENST00000465721 THOC2Q8NI27 1593 aaKnown RBP23.41■■□□□ 1.34
CNOT4-208ENST00000465721 LAMC3Q9Y6N6 1575 aa23.33■■□□□ 1.33
CNOT4-208ENST00000465721 KIF21AQ7Z4S6 1674 aa23.31■■□□□ 1.32
CNOT4-208ENST00000465721 MROH2BQ7Z745 1585 aa23.27■■□□□ 1.32
CNOT4-208ENST00000465721 PDS5BQ9NTI5 1447 aa23.1■■□□□ 1.29
CNOT4-208ENST00000465721 WIZO95785 1651 aa23.03■■□□□ 1.28
CNOT4-208ENST00000465721 CADPSQ9ULU8 1353 aa22.99■■□□□ 1.27
CNOT4-208ENST00000465721 MRC2Q9UBG0 1479 aa22.98■■□□□ 1.27
CNOT4-208ENST00000465721 WDR62O43379 1518 aa22.98■■□□□ 1.27
CNOT4-208ENST00000465721 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
CNOT4-208ENST00000465721 FANCD2Q9BXW9 1451 aa22.77■■□□□ 1.24
CNOT4-208ENST00000465721 CFTRP13569 1480 aa22.73■■□□□ 1.23
CNOT4-208ENST00000465721 TOP2AP11388 1531 aaKnown RBP22.71■■□□□ 1.23
CNOT4-208ENST00000465721 PRDM2Q13029 1718 aa22.7■■□□□ 1.22
CNOT4-208ENST00000465721 TRIM41Q8WV44 630 aa22.69■■□□□ 1.22
CNOT4-208ENST00000465721 RSF1Q96T23 1441 aaPredicted RBP22.65■■□□□ 1.22
CNOT4-208ENST00000465721 URB2Q14146 1524 aaKnown RBP22.64■■□□□ 1.21
CNOT4-208ENST00000465721 OSCARQ8IYS5 282 aa22.47■■□□□ 1.19
CNOT4-208ENST00000465721 RIMBP3CA6NJZ7 1639 aa22.41■■□□□ 1.18
CNOT4-208ENST00000465721 RIMBP3BA6NNM3 1639 aa22.41■■□□□ 1.18
CNOT4-208ENST00000465721 RIMBP3Q9UFD9 1639 aa22.41■■□□□ 1.18
CNOT4-208ENST00000465721 ZNF608Q9ULD9 1512 aaPredicted RBP22.38■■□□□ 1.17
CNOT4-208ENST00000465721 CCDC88BA6NC98 1476 aa22.38■■□□□ 1.17
CNOT4-208ENST00000465721 IFT140Q96RY7 1462 aa22.38■■□□□ 1.17
CNOT4-208ENST00000465721 TOPBP1Q92547 1522 aa22.35■■□□□ 1.17
CNOT4-208ENST00000465721 EIF4G3O43432 1585 aaKnown RBP22.33■■□□□ 1.16
CNOT4-208ENST00000465721 DNMBPQ6XZF7 1577 aa22.28■■□□□ 1.16
CNOT4-208ENST00000465721 ARHGEF11O15085 1522 aa22.26■■□□□ 1.15
CNOT4-208ENST00000465721 CHD1O14646 1710 aa22.26■■□□□ 1.15
CNOT4-208ENST00000465721 ABCC8Q09428 1581 aa22.24■■□□□ 1.15
CNOT4-208ENST00000465721 TARBP1Q13395 1621 aaKnown RBP22.23■■□□□ 1.15
CNOT4-208ENST00000465721 POLA1P09884 1462 aaPredicted RBP22.1■■□□□ 1.13
CNOT4-208ENST00000465721 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.136e-6■■■■□ 23.2
CNOT4-208ENST00000465721 ARAP1Q96P48 1450 aa22.04■■□□□ 1.12
CNOT4-208ENST00000465721 WDR97A6NE52 1622 aa21.99■■□□□ 1.11
CNOT4-208ENST00000465721 RAD54L2Q9Y4B4 1467 aa21.98■■□□□ 1.11
CNOT4-208ENST00000465721 CYB5RLQ6IPT4 315 aa21.95■■□□□ 1.1
CNOT4-208ENST00000465721 CLASP1Q7Z460 1538 aa21.94■■□□□ 1.1
CNOT4-208ENST00000465721 SNAPC4Q5SXM2 1469 aa21.92■■□□□ 1.1
CNOT4-208ENST00000465721 FGD5Q6ZNL6 1462 aa21.92■■□□□ 1.1
CNOT4-208ENST00000465721 SOGA1O94964 1423 aa21.91■■□□□ 1.1
CNOT4-208ENST00000465721 TDRD9Q8NDG6 1382 aaKnown RBP21.89■■□□□ 1.1
CNOT4-208ENST00000465721 CUX1P39880 1505 aa21.89■■□□□ 1.09
CNOT4-208ENST00000465721 FBLN2P98095 1184 aa21.88■■□□□ 1.09
CNOT4-208ENST00000465721 SYNJ1O43426 1573 aa21.86■■□□□ 1.09
CNOT4-208ENST00000465721 PBRM1Q86U86 1689 aa21.85■■□□□ 1.09
CNOT4-208ENST00000465721 MAGI1Q96QZ7 1491 aaPredicted RBP21.85■■□□□ 1.09
CNOT4-208ENST00000465721 GRIN2BQ13224 1484 aa21.8■■□□□ 1.08
CNOT4-208ENST00000465721 SYNJ2O15056 1496 aa21.77■■□□□ 1.08
CNOT4-208ENST00000465721 TRHP20396 242 aaPredicted RBP21.75■■□□□ 1.07
CNOT4-208ENST00000465721 ABCA5Q8WWZ7 1642 aa21.74■■□□□ 1.07
CNOT4-208ENST00000465721 CHMP7Q8WUX9 453 aaPredicted RBP21.71■■□□□ 1.07
CNOT4-208ENST00000465721 GAPVD1Q14C86 1478 aa21.68■■□□□ 1.06
CNOT4-208ENST00000465721 ABCA10Q8WWZ4 1543 aa21.66■■□□□ 1.06
CNOT4-208ENST00000465721 ADAMTS12P58397 1594 aa21.58■■□□□ 1.05
CNOT4-208ENST00000465721 ERCC6L2Q5T890 1561 aa21.56■■□□□ 1.04
CNOT4-208ENST00000465721 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
CNOT4-208ENST00000465721 GRIN2AQ12879 1464 aa21.55■■□□□ 1.04
CNOT4-208ENST00000465721 CEP170Q5SW79 1584 aa21.54■■□□□ 1.04
CNOT4-208ENST00000465721 SHROOM2Q13796 1616 aa21.51■■□□□ 1.03
CNOT4-208ENST00000465721 TOP2BQ02880 1626 aa21.5■■□□□ 1.03
CNOT4-208ENST00000465721 NUP160Q12769 1436 aa21.49■■□□□ 1.03
CNOT4-208ENST00000465721 WRNQ14191 1432 aaPredicted RBP eCLIP21.46■■□□□ 1.03
CNOT4-208ENST00000465721 KIF13AQ9H1H9 1805 aa21.4■■□□□ 1.02
CNOT4-208ENST00000465721 ERICH3Q5RHP9 1530 aa21.39■■□□□ 1.02
CNOT4-208ENST00000465721 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
CNOT4-208ENST00000465721 SUPT5HO00267 1087 aaKnown RBP21.32■■□□□ 1
CNOT4-208ENST00000465721 RUSC2Q8N2Y8 1516 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms