RNA–Protein interactions for RNA: ENST00000465601.1

CHPF2-202, Transcript of chondroitin polymerizing factor 2, humanhuman

TSL 3

Gene CHPF2, Length 782 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPF2-202ENST00000465601 NISCHQ9Y2I1 1504 aa29.81■■■□□ 2.36
CHPF2-202ENST00000465601 CCDC180Q9P1Z9 1646 aa26.41■■□□□ 1.82
CHPF2-202ENST00000465601 ABCC9O60706 1549 aa25.84■■□□□ 1.73
CHPF2-202ENST00000465601 DCAF8L2P0C7V8 631 aa25.01■■□□□ 1.59
CHPF2-202ENST00000465601 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
CHPF2-202ENST00000465601 NACADO15069 1562 aa24.84■■□□□ 1.57
CHPF2-202ENST00000465601 ZCCHC6Q5VYS8 1495 aaKnown RBP24.83■■□□□ 1.56
CHPF2-202ENST00000465601 MYO15BQ96JP2 1530 aa24.67■■□□□ 1.54
CHPF2-202ENST00000465601 DCAF1Q9Y4B6 1507 aa24.62■■□□□ 1.53
CHPF2-202ENST00000465601 UNC13AQ9UPW8 1703 aa24.33■■□□□ 1.49
CHPF2-202ENST00000465601 PABPN1Q86U42 306 aaKnown RBP eCLIP24.22■■□□□ 1.47
CHPF2-202ENST00000465601 SCRIBQ14160 1630 aa24.17■■□□□ 1.46
CHPF2-202ENST00000465601 BICRAQ9NZM4 1560 aa24.11■■□□□ 1.45
CHPF2-202ENST00000465601 SHROOM4Q9ULL8 1493 aa23.77■■□□□ 1.4
CHPF2-202ENST00000465601 DNAJC5BQ9UF47 199 aa23.68■■□□□ 1.38
CHPF2-202ENST00000465601 EIF4G1Q04637 1599 aaKnown RBP23.45■■□□□ 1.34
CHPF2-202ENST00000465601 CC2D2AQ9P2K1 1620 aa23.36■■□□□ 1.33
CHPF2-202ENST00000465601 CECR2Q9BXF3 1484 aa23.26■■□□□ 1.31
CHPF2-202ENST00000465601 SMARCA4P51532 1647 aa23.11■■□□□ 1.29
CHPF2-202ENST00000465601 BAZ1AQ9NRL2 1556 aaPredicted RBP23.08■■□□□ 1.29
CHPF2-202ENST00000465601 MROH2BQ7Z745 1585 aa23■■□□□ 1.27
CHPF2-202ENST00000465601 ATAD2BQ9ULI0 1458 aa22.98■■□□□ 1.27
CHPF2-202ENST00000465601 NCAPD3P42695 1498 aa22.92■■□□□ 1.26
CHPF2-202ENST00000465601 SMARCA2P51531 1590 aa22.92■■□□□ 1.26
CHPF2-202ENST00000465601 PEG3Q9GZU2 1588 aa22.84■■□□□ 1.25
CHPF2-202ENST00000465601 HMGXB3Q12766 1538 aa22.79■■□□□ 1.24
CHPF2-202ENST00000465601 BAZ1BQ9UIG0 1483 aaKnown RBP22.79■■□□□ 1.24
CHPF2-202ENST00000465601 RSF1Q96T23 1441 aaPredicted RBP22.77■■□□□ 1.24
CHPF2-202ENST00000465601 WIZO95785 1651 aa22.77■■□□□ 1.24
CHPF2-202ENST00000465601 TOP2AP11388 1531 aaKnown RBP22.48■■□□□ 1.19
CHPF2-202ENST00000465601 NESP48681 1621 aa22.39■■□□□ 1.18
CHPF2-202ENST00000465601 SUPT5HO00267 1087 aaKnown RBP22.36■■□□□ 1.17
CHPF2-202ENST00000465601 LAMC3Q9Y6N6 1575 aa22.29■■□□□ 1.16
CHPF2-202ENST00000465601 CADPSQ9ULU8 1353 aa22.29■■□□□ 1.16
CHPF2-202ENST00000465601 CCDC88BA6NC98 1476 aa22.27■■□□□ 1.16
CHPF2-202ENST00000465601 ERCC6Q03468 1493 aa22.25■■□□□ 1.15
CHPF2-202ENST00000465601 PDS5BQ9NTI5 1447 aa22.16■■□□□ 1.14
CHPF2-202ENST00000465601 CFTRP13569 1480 aa22.15■■□□□ 1.14
CHPF2-202ENST00000465601 KIF21AQ7Z4S6 1674 aa22.11■■□□□ 1.13
CHPF2-202ENST00000465601 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
CHPF2-202ENST00000465601 PRDM2Q13029 1718 aa21.99■■□□□ 1.11
CHPF2-202ENST00000465601 THOC2Q8NI27 1593 aaKnown RBP21.98■■□□□ 1.11
CHPF2-202ENST00000465601 CEP164Q9UPV0 1460 aa21.97■■□□□ 1.11
CHPF2-202ENST00000465601 CUX2O14529 1486 aa21.93■■□□□ 1.1
CHPF2-202ENST00000465601 MRC2Q9UBG0 1479 aa21.92■■□□□ 1.1
CHPF2-202ENST00000465601 WDR62O43379 1518 aa21.83■■□□□ 1.09
CHPF2-202ENST00000465601 URB2Q14146 1524 aaKnown RBP21.8■■□□□ 1.08
CHPF2-202ENST00000465601 TOPBP1Q92547 1522 aa21.69■■□□□ 1.06
CHPF2-202ENST00000465601 ABCC8Q09428 1581 aa21.66■■□□□ 1.06
CHPF2-202ENST00000465601 DNMBPQ6XZF7 1577 aa21.65■■□□□ 1.06
CHPF2-202ENST00000465601 CUX1P39880 1505 aa21.56■■□□□ 1.04
CHPF2-202ENST00000465601 POLA1P09884 1462 aaPredicted RBP21.51■■□□□ 1.03
CHPF2-202ENST00000465601 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
CHPF2-202ENST00000465601 FGD5Q6ZNL6 1462 aa21.47■■□□□ 1.03
CHPF2-202ENST00000465601 WRNQ14191 1432 aaPredicted RBP eCLIP21.46■■□□□ 1.03
CHPF2-202ENST00000465601 SOGA1O94964 1423 aa21.45■■□□□ 1.02
CHPF2-202ENST00000465601 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.02
CHPF2-202ENST00000465601 ZNF608Q9ULD9 1512 aaPredicted RBP21.45■■□□□ 1.02
CHPF2-202ENST00000465601 TARBP1Q13395 1621 aaKnown RBP21.43■■□□□ 1.02
CHPF2-202ENST00000465601 SYNJ1O43426 1573 aa21.4■■□□□ 1.02
CHPF2-202ENST00000465601 TOP2BQ02880 1626 aa21.38■■□□□ 1.01
CHPF2-202ENST00000465601 BIVM-ERCC5R4GMW8 1640 aa21.37■■□□□ 1.01
CHPF2-202ENST00000465601 AQRO60306 1485 aaKnown RBP eCLIP21.35■■□□□ 1.013e-7■■■□□ 14.9
CHPF2-202ENST00000465601 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
CHPF2-202ENST00000465601 EIF4G3O43432 1585 aaKnown RBP21.31■■□□□ 1
CHPF2-202ENST00000465601 WDR97A6NE52 1622 aa21.26■□□□□ 0.99
CHPF2-202ENST00000465601 ABCA10Q8WWZ4 1543 aa21.25■□□□□ 0.99
CHPF2-202ENST00000465601 DNAJC5Q9H3Z4 198 aa21.22■□□□□ 0.99
CHPF2-202ENST00000465601 GAPVD1Q14C86 1478 aa21.19■□□□□ 0.98
CHPF2-202ENST00000465601 GRIN2BQ13224 1484 aa21.15■□□□□ 0.98
CHPF2-202ENST00000465601 ABCA5Q8WWZ7 1642 aa21.15■□□□□ 0.98
CHPF2-202ENST00000465601 PBRM1Q86U86 1689 aa21.12■□□□□ 0.97
CHPF2-202ENST00000465601 FBLN2P98095 1184 aa21.12■□□□□ 0.97
CHPF2-202ENST00000465601 OSCARQ8IYS5 282 aa21.12■□□□□ 0.97
CHPF2-202ENST00000465601 SNAPC4Q5SXM2 1469 aa21.12■□□□□ 0.97
CHPF2-202ENST00000465601 TRIM41Q8WV44 630 aa21.09■□□□□ 0.97
CHPF2-202ENST00000465601 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
CHPF2-202ENST00000465601 CHD1O14646 1710 aa21.07■□□□□ 0.96
CHPF2-202ENST00000465601 CHMP7Q8WUX9 453 aaPredicted RBP21.04■□□□□ 0.96
CHPF2-202ENST00000465601 KIF27Q86VH2 1401 aa21.01■□□□□ 0.95
CHPF2-202ENST00000465601 SYNJ2O15056 1496 aa21■□□□□ 0.95
CHPF2-202ENST00000465601 ERICH3Q5RHP9 1530 aa20.99■□□□□ 0.95
CHPF2-202ENST00000465601 ADAMTS12P58397 1594 aa20.94■□□□□ 0.94
CHPF2-202ENST00000465601 IGF1RP08069 1367 aa20.94■□□□□ 0.94
CHPF2-202ENST00000465601 FHAD1B1AJZ9 1412 aa20.93■□□□□ 0.94
CHPF2-202ENST00000465601 CHIC1Q5VXU3 224 aa20.91■□□□□ 0.94
CHPF2-202ENST00000465601 RUSC2Q8N2Y8 1516 aa20.9■□□□□ 0.94
CHPF2-202ENST00000465601 GRIN2AQ12879 1464 aa20.88■□□□□ 0.93
CHPF2-202ENST00000465601 CARMIL1Q5VZK9 1371 aa20.82■□□□□ 0.92
CHPF2-202ENST00000465601 CUL7Q14999 1698 aa20.81■□□□□ 0.92
CHPF2-202ENST00000465601 CLASP1Q7Z460 1538 aa20.8■□□□□ 0.92
CHPF2-202ENST00000465601 NUP160Q12769 1436 aa20.78■□□□□ 0.92
CHPF2-202ENST00000465601 CEP170Q5SW79 1584 aa20.77■□□□□ 0.92
CHPF2-202ENST00000465601 RIMBP3CA6NJZ7 1639 aa20.73■□□□□ 0.91
CHPF2-202ENST00000465601 RIMBP3BA6NNM3 1639 aa20.73■□□□□ 0.91
CHPF2-202ENST00000465601 RIMBP3Q9UFD9 1639 aa20.73■□□□□ 0.91
CHPF2-202ENST00000465601 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
CHPF2-202ENST00000465601 FAM9AQ8IZU1 332 aaPredicted RBP20.69■□□□□ 0.9
CHPF2-202ENST00000465601 CSRNP3Q8WYN3 585 aa20.68■□□□□ 0.9
CHPF2-202ENST00000465601 RAPGEF2Q9Y4G8 1499 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms