RNA–Protein interactions for RNA: ENST00000465187.1

EDEM1-205, Transcript of ER degradation enhancing alpha-mannosidase like protein 1, humanhuman

TSL 4

Gene EDEM1, Length 585 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM1-205ENST00000465187 NISCHQ9Y2I1 1504 aa54.19■■■■■ 6.26
EDEM1-205ENST00000465187 CCDC180Q9P1Z9 1646 aa48.52■■■■■ 5.36
EDEM1-205ENST00000465187 ABCC9O60706 1549 aa48.42■■■■■ 5.34
EDEM1-205ENST00000465187 RB1CC1Q8TDY2 1594 aa46.05■■■■■ 4.96
EDEM1-205ENST00000465187 NACADO15069 1562 aa45.75■■■■■ 4.92
EDEM1-205ENST00000465187 DCAF8L2P0C7V8 631 aa45.64■■■■■ 4.9
EDEM1-205ENST00000465187 DNAJC5BQ9UF47 199 aa45.3■■■■■ 4.84
EDEM1-205ENST00000465187 UNC13AQ9UPW8 1703 aa45.28■■■■■ 4.84
EDEM1-205ENST00000465187 MYO15BQ96JP2 1530 aa45.12■■■■■ 4.81
EDEM1-205ENST00000465187 PABPN1Q86U42 306 aaKnown RBP eCLIP45.11■■■■■ 4.81
EDEM1-205ENST00000465187 ZCCHC6Q5VYS8 1495 aaKnown RBP44.97■■■■■ 4.79
EDEM1-205ENST00000465187 BICRAQ9NZM4 1560 aa44.87■■■■■ 4.77
EDEM1-205ENST00000465187 DCAF1Q9Y4B6 1507 aa44.66■■■■■ 4.74
EDEM1-205ENST00000465187 SCRIBQ14160 1630 aa44.36■■■■■ 4.69
EDEM1-205ENST00000465187 SHROOM4Q9ULL8 1493 aa43.98■■■■■ 4.63
EDEM1-205ENST00000465187 CC2D2AQ9P2K1 1620 aa43.75■■■■■ 4.59
EDEM1-205ENST00000465187 EIF4G1Q04637 1599 aaKnown RBP43.67■■■■■ 4.58
EDEM1-205ENST00000465187 CECR2Q9BXF3 1484 aa43.51■■■■■ 4.56
EDEM1-205ENST00000465187 SMARCA4P51532 1647 aa42.28■■■■■ 4.36
EDEM1-205ENST00000465187 NCAPD3P42695 1498 aa42.24■■■■■ 4.35
EDEM1-205ENST00000465187 ATAD2BQ9ULI0 1458 aa42.21■■■■■ 4.35
EDEM1-205ENST00000465187 SMARCA2P51531 1590 aa42.03■■■■■ 4.32
EDEM1-205ENST00000465187 BAZ1AQ9NRL2 1556 aaPredicted RBP42■■■■■ 4.31
EDEM1-205ENST00000465187 HMGXB3Q12766 1538 aa41.98■■■■■ 4.31
EDEM1-205ENST00000465187 MROH2BQ7Z745 1585 aa41.85■■■■■ 4.29
EDEM1-205ENST00000465187 BAZ1BQ9UIG0 1483 aaKnown RBP41.79■■■■■ 4.28
EDEM1-205ENST00000465187 PEG3Q9GZU2 1588 aa41.78■■■■■ 4.28
EDEM1-205ENST00000465187 NESP48681 1621 aa41.72■■■■■ 4.27
EDEM1-205ENST00000465187 ERCC6Q03468 1493 aa41.67■■■■■ 4.26
EDEM1-205ENST00000465187 CUX2O14529 1486 aa41.48■■■■■ 4.23
EDEM1-205ENST00000465187 WIZO95785 1651 aa41.41■■■■■ 4.22
EDEM1-205ENST00000465187 LAMC3Q9Y6N6 1575 aa41.29■■■■■ 4.2
EDEM1-205ENST00000465187 DNAJC5Q9H3Z4 198 aa41.25■■■■■ 4.19
EDEM1-205ENST00000465187 THOC2Q8NI27 1593 aaKnown RBP41.21■■■■■ 4.19
EDEM1-205ENST00000465187 KIF21AQ7Z4S6 1674 aa41.21■■■■■ 4.19
EDEM1-205ENST00000465187 RSF1Q96T23 1441 aaPredicted RBP40.99■■■■■ 4.15
EDEM1-205ENST00000465187 CADPSQ9ULU8 1353 aa40.97■■■■■ 4.15
EDEM1-205ENST00000465187 PDS5BQ9NTI5 1447 aa40.95■■■■■ 4.15
EDEM1-205ENST00000465187 TOP2AP11388 1531 aaKnown RBP40.77■■■■■ 4.12
EDEM1-205ENST00000465187 MRC2Q9UBG0 1479 aa40.69■■■■■ 4.1
EDEM1-205ENST00000465187 WDR62O43379 1518 aa40.62■■■■■ 4.09
EDEM1-205ENST00000465187 CFTRP13569 1480 aa40.58■■■■■ 4.09
EDEM1-205ENST00000465187 FANCD2Q9BXW9 1451 aa40.57■■■■■ 4.08
EDEM1-205ENST00000465187 CEP164Q9UPV0 1460 aa40.57■■■■■ 4.08
EDEM1-205ENST00000465187 CCDC88BA6NC98 1476 aa40.33■■■■■ 4.05
EDEM1-205ENST00000465187 PRDM2Q13029 1718 aa40.3■■■■■ 4.04
EDEM1-205ENST00000465187 URB2Q14146 1524 aaKnown RBP40.3■■■■■ 4.04
EDEM1-205ENST00000465187 TOPBP1Q92547 1522 aa39.86■■■■□ 3.97
EDEM1-205ENST00000465187 ZNF608Q9ULD9 1512 aaPredicted RBP39.8■■■■□ 3.96
EDEM1-205ENST00000465187 IFT140Q96RY7 1462 aa39.71■■■■□ 3.95
EDEM1-205ENST00000465187 DNMBPQ6XZF7 1577 aa39.7■■■■□ 3.95
EDEM1-205ENST00000465187 TRIM41Q8WV44 630 aa39.62■■■■□ 3.93
EDEM1-205ENST00000465187 ABCC8Q09428 1581 aa39.59■■■■□ 3.93
EDEM1-205ENST00000465187 OSCARQ8IYS5 282 aa39.59■■■■□ 3.93
EDEM1-205ENST00000465187 EIF4G3O43432 1585 aaKnown RBP39.57■■■■□ 3.92
EDEM1-205ENST00000465187 TARBP1Q13395 1621 aaKnown RBP39.53■■■■□ 3.92
EDEM1-205ENST00000465187 POLA1P09884 1462 aaPredicted RBP39.46■■■■□ 3.91
EDEM1-205ENST00000465187 AQRO60306 1485 aaKnown RBP eCLIP39.42■■■■□ 3.9
EDEM1-205ENST00000465187 RAD54L2Q9Y4B4 1467 aa39.37■■■■□ 3.89
EDEM1-205ENST00000465187 SUPT5HO00267 1087 aaKnown RBP39.34■■■■□ 3.89
EDEM1-205ENST00000465187 CHD1O14646 1710 aa39.3■■■■□ 3.88
EDEM1-205ENST00000465187 CUX1P39880 1505 aa39.3■■■■□ 3.88
EDEM1-205ENST00000465187 RIMBP3CA6NJZ7 1639 aa39.26■■■■□ 3.88
EDEM1-205ENST00000465187 RIMBP3BA6NNM3 1639 aa39.26■■■■□ 3.88
EDEM1-205ENST00000465187 RIMBP3Q9UFD9 1639 aa39.26■■■■□ 3.88
EDEM1-205ENST00000465187 FGD5Q6ZNL6 1462 aa39.25■■■■□ 3.87
EDEM1-205ENST00000465187 SOGA1O94964 1423 aa39.22■■■■□ 3.87
EDEM1-205ENST00000465187 TDRD9Q8NDG6 1382 aaKnown RBP39.19■■■■□ 3.86
EDEM1-205ENST00000465187 ARHGEF11O15085 1522 aa39.1■■■■□ 3.85
EDEM1-205ENST00000465187 WDR97A6NE52 1622 aa39.04■■■■□ 3.84
EDEM1-205ENST00000465187 FBLN2P98095 1184 aa39.04■■■■□ 3.84
EDEM1-205ENST00000465187 SNAPC4Q5SXM2 1469 aa39.01■■■■□ 3.84
EDEM1-205ENST00000465187 PBRM1Q86U86 1689 aa38.87■■■■□ 3.81
EDEM1-205ENST00000465187 GRIN2BQ13224 1484 aa38.84■■■■□ 3.81
EDEM1-205ENST00000465187 MAGI1Q96QZ7 1491 aaPredicted RBP38.8■■■■□ 3.8
EDEM1-205ENST00000465187 ARAP1Q96P48 1450 aa38.77■■■■□ 3.8
EDEM1-205ENST00000465187 ABCA5Q8WWZ7 1642 aa38.77■■■■□ 3.8
EDEM1-205ENST00000465187 GAPVD1Q14C86 1478 aa38.76■■■■□ 3.8
EDEM1-205ENST00000465187 CLASP1Q7Z460 1538 aa38.76■■■■□ 3.8
EDEM1-205ENST00000465187 ABCA10Q8WWZ4 1543 aa38.76■■■■□ 3.8
EDEM1-205ENST00000465187 CYB5RLQ6IPT4 315 aa38.75■■■■□ 3.79
EDEM1-205ENST00000465187 SYNJ1O43426 1573 aa38.72■■■■□ 3.79
EDEM1-205ENST00000465187 CHMP7Q8WUX9 453 aaPredicted RBP38.71■■■■□ 3.79
EDEM1-205ENST00000465187 BIVM-ERCC5R4GMW8 1640 aa38.71■■■■□ 3.79
EDEM1-205ENST00000465187 SYNJ2O15056 1496 aa38.69■■■■□ 3.78
EDEM1-205ENST00000465187 TOP2BQ02880 1626 aa38.67■■■■□ 3.78
EDEM1-205ENST00000465187 WRNQ14191 1432 aaPredicted RBP eCLIP38.61■■■■□ 3.77
EDEM1-205ENST00000465187 ADAMTS12P58397 1594 aa38.46■■■■□ 3.75
EDEM1-205ENST00000465187 GRIN2AQ12879 1464 aa38.39■■■■□ 3.74
EDEM1-205ENST00000465187 CEP170Q5SW79 1584 aa38.34■■■■□ 3.73
EDEM1-205ENST00000465187 ERCC6L2Q5T890 1561 aa38.31■■■■□ 3.72
EDEM1-205ENST00000465187 ERICH3Q5RHP9 1530 aa38.25■■■■□ 3.71
EDEM1-205ENST00000465187 NUP160Q12769 1436 aa38.24■■■■□ 3.71
EDEM1-205ENST00000465187 FHAD1B1AJZ9 1412 aa38.23■■■■□ 3.71
EDEM1-205ENST00000465187 TRHP20396 242 aaPredicted RBP38.22■■■■□ 3.71
EDEM1-205ENST00000465187 SHROOM2Q13796 1616 aa38.11■■■■□ 3.69
EDEM1-205ENST00000465187 RUSC2Q8N2Y8 1516 aa37.92■■■■□ 3.66
EDEM1-205ENST00000465187 PRG4Q92954 1404 aaPredicted RBP37.86■■■■□ 3.65
EDEM1-205ENST00000465187 IGF1RP08069 1367 aa37.83■■■■□ 3.65
EDEM1-205ENST00000465187 KIF27Q86VH2 1401 aa37.8■■■■□ 3.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms