RNA–Protein interactions for RNA: ENST00000465155.5

ATF3-208, Transcript of activating transcription factor 3, humanhuman

TSL 2

Gene ATF3, Length 1,626 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF3-208ENST00000465155 NISCHQ9Y2I1 1504 aa31.38■■■□□ 2.61
ATF3-208ENST00000465155 CCDC180Q9P1Z9 1646 aa27.64■■■□□ 2.01
ATF3-208ENST00000465155 AEBP2Q6ZN18 517 aaPredicted RBP26.92■■□□□ 1.9
ATF3-208ENST00000465155 ABCC9O60706 1549 aa26.49■■□□□ 1.83
ATF3-208ENST00000465155 ZCCHC6Q5VYS8 1495 aaKnown RBP26.26■■□□□ 1.79
ATF3-208ENST00000465155 CHIC1Q5VXU3 224 aa26.1■■□□□ 1.77
ATF3-208ENST00000465155 DCAF8L2P0C7V8 631 aa26.03■■□□□ 1.76
ATF3-208ENST00000465155 DCAF1Q9Y4B6 1507 aa25.94■■□□□ 1.74
ATF3-208ENST00000465155 MYO15BQ96JP2 1530 aa25.82■■□□□ 1.72
ATF3-208ENST00000465155 NACADO15069 1562 aa25.81■■□□□ 1.72
ATF3-208ENST00000465155 RB1CC1Q8TDY2 1594 aa25.72■■□□□ 1.71
ATF3-208ENST00000465155 SCRIBQ14160 1630 aa25.31■■□□□ 1.64
ATF3-208ENST00000465155 SHROOM4Q9ULL8 1493 aa25.24■■□□□ 1.63
ATF3-208ENST00000465155 UNC13AQ9UPW8 1703 aa25.22■■□□□ 1.63
ATF3-208ENST00000465155 BICRAQ9NZM4 1560 aa24.92■■□□□ 1.58
ATF3-208ENST00000465155 PABPN1Q86U42 306 aaKnown RBP eCLIP24.86■■□□□ 1.57
ATF3-208ENST00000465155 CECR2Q9BXF3 1484 aa24.4■■□□□ 1.5
ATF3-208ENST00000465155 BAZ1AQ9NRL2 1556 aaPredicted RBP24.28■■□□□ 1.48
ATF3-208ENST00000465155 SMARCA4P51532 1647 aa24.24■■□□□ 1.47
ATF3-208ENST00000465155 EIF4G1Q04637 1599 aaKnown RBP24.22■■□□□ 1.47
ATF3-208ENST00000465155 MROH2BQ7Z745 1585 aa24.21■■□□□ 1.47
ATF3-208ENST00000465155 RSF1Q96T23 1441 aaPredicted RBP24.14■■□□□ 1.45
ATF3-208ENST00000465155 SUPT5HO00267 1087 aaKnown RBP24.04■■□□□ 1.44
ATF3-208ENST00000465155 WIZO95785 1651 aa24.02■■□□□ 1.44
ATF3-208ENST00000465155 CC2D2AQ9P2K1 1620 aa23.99■■□□□ 1.43
ATF3-208ENST00000465155 PEG3Q9GZU2 1588 aa23.96■■□□□ 1.43
ATF3-208ENST00000465155 ATAD2BQ9ULI0 1458 aa23.93■■□□□ 1.42
ATF3-208ENST00000465155 SMARCA2P51531 1590 aa23.93■■□□□ 1.42
ATF3-208ENST00000465155 NCAPD3P42695 1498 aa23.8■■□□□ 1.4
ATF3-208ENST00000465155 BAZ1BQ9UIG0 1483 aaKnown RBP23.78■■□□□ 1.4
ATF3-208ENST00000465155 TOP2AP11388 1531 aaKnown RBP23.75■■□□□ 1.39
ATF3-208ENST00000465155 HMGXB3Q12766 1538 aa23.75■■□□□ 1.39
ATF3-208ENST00000465155 DNAJC5BQ9UF47 199 aa23.74■■□□□ 1.39
ATF3-208ENST00000465155 CCDC88BA6NC98 1476 aa23.48■■□□□ 1.35
ATF3-208ENST00000465155 CADPSQ9ULU8 1353 aa23.15■■□□□ 1.3
ATF3-208ENST00000465155 CFTRP13569 1480 aa23.14■■□□□ 1.3
ATF3-208ENST00000465155 NESP48681 1621 aa23.1■■□□□ 1.29
ATF3-208ENST00000465155 LAMC3Q9Y6N6 1575 aa23.1■■□□□ 1.29
ATF3-208ENST00000465155 PRDM2Q13029 1718 aa23.09■■□□□ 1.29
ATF3-208ENST00000465155 SENP3Q9H4L4 574 aaPredicted RBP22.95■■□□□ 1.26
ATF3-208ENST00000465155 PDS5BQ9NTI5 1447 aa22.91■■□□□ 1.26
ATF3-208ENST00000465155 FANCD2Q9BXW9 1451 aa22.91■■□□□ 1.26
ATF3-208ENST00000465155 PHF23Q9BUL5 403 aaPredicted RBP22.89■■□□□ 1.25
ATF3-208ENST00000465155 KIF21AQ7Z4S6 1674 aa22.88■■□□□ 1.25
ATF3-208ENST00000465155 ABCC8Q09428 1581 aa22.85■■□□□ 1.25
ATF3-208ENST00000465155 CEP164Q9UPV0 1460 aa22.83■■□□□ 1.25
ATF3-208ENST00000465155 ERCC6Q03468 1493 aa22.77■■□□□ 1.24
ATF3-208ENST00000465155 WRNQ14191 1432 aaPredicted RBP eCLIP22.75■■□□□ 1.23
ATF3-208ENST00000465155 SYNJ1O43426 1573 aa22.69■■□□□ 1.22
ATF3-208ENST00000465155 CUX1P39880 1505 aa22.68■■□□□ 1.22
ATF3-208ENST00000465155 MRC2Q9UBG0 1479 aa22.65■■□□□ 1.22
ATF3-208ENST00000465155 URB2Q14146 1524 aaKnown RBP22.65■■□□□ 1.22
ATF3-208ENST00000465155 TRIM41Q8WV44 630 aa22.64■■□□□ 1.22
ATF3-208ENST00000465155 TOP2BQ02880 1626 aa22.64■■□□□ 1.22
ATF3-208ENST00000465155 BIVM-ERCC5R4GMW8 1640 aa22.64■■□□□ 1.22
ATF3-208ENST00000465155 DNMBPQ6XZF7 1577 aa22.64■■□□□ 1.21
ATF3-208ENST00000465155 TOPBP1Q92547 1522 aa22.61■■□□□ 1.21
ATF3-208ENST00000465155 THOC2Q8NI27 1593 aaKnown RBP22.61■■□□□ 1.21
ATF3-208ENST00000465155 WDR62O43379 1518 aa22.56■■□□□ 1.2
ATF3-208ENST00000465155 FGD5Q6ZNL6 1462 aa22.5■■□□□ 1.19
ATF3-208ENST00000465155 POLA1P09884 1462 aaPredicted RBP22.46■■□□□ 1.19
ATF3-208ENST00000465155 SOGA1O94964 1423 aa22.38■■□□□ 1.17
ATF3-208ENST00000465155 RAD54L2Q9Y4B4 1467 aa22.37■■□□□ 1.17
ATF3-208ENST00000465155 CUX2O14529 1486 aa22.36■■□□□ 1.17
ATF3-208ENST00000465155 TARBP1Q13395 1621 aaKnown RBP22.33■■□□□ 1.16
ATF3-208ENST00000465155 WDR97A6NE52 1622 aa22.3■■□□□ 1.16
ATF3-208ENST00000465155 IFT140Q96RY7 1462 aa22.3■■□□□ 1.16
ATF3-208ENST00000465155 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
ATF3-208ENST00000465155 RUSC2Q8N2Y8 1516 aa22.24■■□□□ 1.15
ATF3-208ENST00000465155 FAM9AQ8IZU1 332 aaPredicted RBP22.21■■□□□ 1.15
ATF3-208ENST00000465155 KIF27Q86VH2 1401 aa22.21■■□□□ 1.15
ATF3-208ENST00000465155 TDRD9Q8NDG6 1382 aaKnown RBP22.19■■□□□ 1.14
ATF3-208ENST00000465155 ABCA5Q8WWZ7 1642 aa22.18■■□□□ 1.14
ATF3-208ENST00000465155 ZNF608Q9ULD9 1512 aaPredicted RBP22.18■■□□□ 1.14
ATF3-208ENST00000465155 EEA1Q15075 1411 aa22.18■■□□□ 1.14
ATF3-208ENST00000465155 AQRO60306 1485 aaKnown RBP eCLIP22.14■■□□□ 1.138e-7■□□□□ 9.1
ATF3-208ENST00000465155 EIF4G3O43432 1585 aaKnown RBP22.14■■□□□ 1.13
ATF3-208ENST00000465155 GAPVD1Q14C86 1478 aa22.13■■□□□ 1.13
ATF3-208ENST00000465155 PBRM1Q86U86 1689 aa22.1■■□□□ 1.13
ATF3-208ENST00000465155 CSRNP3Q8WYN3 585 aa22.08■■□□□ 1.13
ATF3-208ENST00000465155 IGF1RP08069 1367 aa22.04■■□□□ 1.12
ATF3-208ENST00000465155 ERICH3Q5RHP9 1530 aa22.04■■□□□ 1.12
ATF3-208ENST00000465155 GRIN2BQ13224 1484 aa22.04■■□□□ 1.12
ATF3-208ENST00000465155 CUL7Q14999 1698 aa21.98■■□□□ 1.11
ATF3-208ENST00000465155 SNAPC4Q5SXM2 1469 aa21.95■■□□□ 1.1
ATF3-208ENST00000465155 KIF21BO75037 1637 aa21.94■■□□□ 1.1
ATF3-208ENST00000465155 CARMIL1Q5VZK9 1371 aa21.94■■□□□ 1.1
ATF3-208ENST00000465155 PRXQ9BXM0 1461 aa21.93■■□□□ 1.1
ATF3-208ENST00000465155 ADAMTS12P58397 1594 aa21.92■■□□□ 1.1
ATF3-208ENST00000465155 EHMT2Q96KQ7 1210 aa21.91■■□□□ 1.1
ATF3-208ENST00000465155 MAGI1Q96QZ7 1491 aaPredicted RBP21.91■■□□□ 1.1
ATF3-208ENST00000465155 FHAD1B1AJZ9 1412 aa21.88■■□□□ 1.09
ATF3-208ENST00000465155 RAPGEF2Q9Y4G8 1499 aa21.88■■□□□ 1.09
ATF3-208ENST00000465155 LOC105371045A0A1W2PR82 267 aa21.87■■□□□ 1.09
ATF3-208ENST00000465155 GOLGA3Q08378 1498 aa21.85■■□□□ 1.09
ATF3-208ENST00000465155 SYNJ2O15056 1496 aa21.82■■□□□ 1.08
ATF3-208ENST00000465155 FBLN2P98095 1184 aa21.77■■□□□ 1.08
ATF3-208ENST00000465155 CHMP7Q8WUX9 453 aaPredicted RBP21.77■■□□□ 1.08
ATF3-208ENST00000465155 CHD1O14646 1710 aa21.76■■□□□ 1.07
ATF3-208ENST00000465155 GRIN2AQ12879 1464 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms