RNA–Protein interactions for RNA: ENST00000464012.1

CCHCR1-210, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 2

Gene CCHCR1, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-210ENST00000464012 NISCHQ9Y2I1 1504 aa47.71■■■■■ 5.23
CCHCR1-210ENST00000464012 CCDC180Q9P1Z9 1646 aa42.71■■■■■ 4.43
CCHCR1-210ENST00000464012 ABCC9O60706 1549 aa42.27■■■■■ 4.36
CCHCR1-210ENST00000464012 RB1CC1Q8TDY2 1594 aa40.42■■■■■ 4.06
CCHCR1-210ENST00000464012 NACADO15069 1562 aa40.2■■■■■ 4.03
CCHCR1-210ENST00000464012 DCAF8L2P0C7V8 631 aa40.11■■■■■ 4.01
CCHCR1-210ENST00000464012 MYO15BQ96JP2 1530 aa39.71■■■■□ 3.95
CCHCR1-210ENST00000464012 UNC13AQ9UPW8 1703 aa39.65■■■■□ 3.94
CCHCR1-210ENST00000464012 ZCCHC6Q5VYS8 1495 aaKnown RBP39.65■■■■□ 3.94
CCHCR1-210ENST00000464012 DCAF1Q9Y4B6 1507 aa39.39■■■■□ 3.9
CCHCR1-210ENST00000464012 PABPN1Q86U42 306 aaKnown RBP eCLIP39.37■■■■□ 3.89
CCHCR1-210ENST00000464012 BICRAQ9NZM4 1560 aa39.22■■■■□ 3.87
CCHCR1-210ENST00000464012 DNAJC5BQ9UF47 199 aa39.17■■■■□ 3.86
CCHCR1-210ENST00000464012 SCRIBQ14160 1630 aa39■■■■□ 3.83
CCHCR1-210ENST00000464012 SHROOM4Q9ULL8 1493 aa38.66■■■■□ 3.78
CCHCR1-210ENST00000464012 CC2D2AQ9P2K1 1620 aa38.23■■■■□ 3.71
CCHCR1-210ENST00000464012 EIF4G1Q04637 1599 aaKnown RBP38.23■■■■□ 3.71
CCHCR1-210ENST00000464012 CECR2Q9BXF3 1484 aa38■■■■□ 3.67
CCHCR1-210ENST00000464012 SMARCA4P51532 1647 aa37.2■■■■□ 3.55
CCHCR1-210ENST00000464012 NCAPD3P42695 1498 aa37.04■■■■□ 3.52
CCHCR1-210ENST00000464012 ATAD2BQ9ULI0 1458 aa37.04■■■■□ 3.52
CCHCR1-210ENST00000464012 BAZ1AQ9NRL2 1556 aaPredicted RBP37.04■■■■□ 3.52
CCHCR1-210ENST00000464012 SMARCA2P51531 1590 aa37■■■■□ 3.51
CCHCR1-210ENST00000464012 HMGXB3Q12766 1538 aa36.89■■■■□ 3.5
CCHCR1-210ENST00000464012 MROH2BQ7Z745 1585 aa36.8■■■■□ 3.48
CCHCR1-210ENST00000464012 BAZ1BQ9UIG0 1483 aaKnown RBP36.75■■■■□ 3.47
CCHCR1-210ENST00000464012 PEG3Q9GZU2 1588 aa36.75■■■■□ 3.47
CCHCR1-210ENST00000464012 ERCC6Q03468 1493 aa36.48■■■■□ 3.43
CCHCR1-210ENST00000464012 WIZO95785 1651 aa36.45■■■■□ 3.43
CCHCR1-210ENST00000464012 NESP48681 1621 aa36.45■■■■□ 3.42
CCHCR1-210ENST00000464012 LAMC3Q9Y6N6 1575 aa36.24■■■■□ 3.39
CCHCR1-210ENST00000464012 CUX2O14529 1486 aa36.2■■■■□ 3.39
CCHCR1-210ENST00000464012 RSF1Q96T23 1441 aaPredicted RBP36.13■■■■□ 3.37
CCHCR1-210ENST00000464012 KIF21AQ7Z4S6 1674 aa36.09■■■■□ 3.37
CCHCR1-210ENST00000464012 THOC2Q8NI27 1593 aaKnown RBP36.02■■■■□ 3.36
CCHCR1-210ENST00000464012 TOP2AP11388 1531 aaKnown RBP35.97■■■■□ 3.35
CCHCR1-210ENST00000464012 PDS5BQ9NTI5 1447 aa35.95■■■■□ 3.35
CCHCR1-210ENST00000464012 CADPSQ9ULU8 1353 aa35.95■■■■□ 3.35
CCHCR1-210ENST00000464012 MRC2Q9UBG0 1479 aa35.67■■■■□ 3.3
CCHCR1-210ENST00000464012 CFTRP13569 1480 aa35.65■■■■□ 3.3
CCHCR1-210ENST00000464012 CEP164Q9UPV0 1460 aa35.63■■■■□ 3.29
CCHCR1-210ENST00000464012 DNAJC5Q9H3Z4 198 aa35.61■■■■□ 3.29
CCHCR1-210ENST00000464012 FANCD2Q9BXW9 1451 aa35.6■■■■□ 3.29
CCHCR1-210ENST00000464012 WDR62O43379 1518 aa35.57■■■■□ 3.28
CCHCR1-210ENST00000464012 PRDM2Q13029 1718 aa35.54■■■■□ 3.28
CCHCR1-210ENST00000464012 CCDC88BA6NC98 1476 aa35.51■■■■□ 3.28
CCHCR1-210ENST00000464012 URB2Q14146 1524 aaKnown RBP35.3■■■■□ 3.24
CCHCR1-210ENST00000464012 TOPBP1Q92547 1522 aa34.99■■■■□ 3.19
CCHCR1-210ENST00000464012 DNMBPQ6XZF7 1577 aa34.92■■■■□ 3.18
CCHCR1-210ENST00000464012 SUPT5HO00267 1087 aaKnown RBP34.91■■■■□ 3.18
CCHCR1-210ENST00000464012 ABCC8Q09428 1581 aa34.88■■■■□ 3.17
CCHCR1-210ENST00000464012 IFT140Q96RY7 1462 aa34.85■■■■□ 3.17
CCHCR1-210ENST00000464012 ZNF608Q9ULD9 1512 aaPredicted RBP34.8■■■■□ 3.16
CCHCR1-210ENST00000464012 EIF4G3O43432 1585 aaKnown RBP34.7■■■■□ 3.15
CCHCR1-210ENST00000464012 TARBP1Q13395 1621 aaKnown RBP34.67■■■■□ 3.14
CCHCR1-210ENST00000464012 POLA1P09884 1462 aaPredicted RBP34.65■■■■□ 3.14
CCHCR1-210ENST00000464012 OSCARQ8IYS5 282 aa34.56■■■■□ 3.12
CCHCR1-210ENST00000464012 CUX1P39880 1505 aa34.55■■■■□ 3.12
CCHCR1-210ENST00000464012 RAD54L2Q9Y4B4 1467 aa34.53■■■■□ 3.12
CCHCR1-210ENST00000464012 FGD5Q6ZNL6 1462 aa34.52■■■■□ 3.12
CCHCR1-210ENST00000464012 AQRO60306 1485 aaKnown RBP eCLIP34.52■■■■□ 3.12
CCHCR1-210ENST00000464012 SOGA1O94964 1423 aa34.47■■■■□ 3.11
CCHCR1-210ENST00000464012 CHD1O14646 1710 aa34.43■■■■□ 3.1
CCHCR1-210ENST00000464012 TRIM41Q8WV44 630 aa34.36■■■■□ 3.09
CCHCR1-210ENST00000464012 TDRD9Q8NDG6 1382 aaKnown RBP34.36■■■■□ 3.09
CCHCR1-210ENST00000464012 WDR97A6NE52 1622 aa34.33■■■■□ 3.09
CCHCR1-210ENST00000464012 RIMBP3CA6NJZ7 1639 aa34.22■■■■□ 3.07
CCHCR1-210ENST00000464012 RIMBP3BA6NNM3 1639 aa34.22■■■■□ 3.07
CCHCR1-210ENST00000464012 RIMBP3Q9UFD9 1639 aa34.22■■■■□ 3.07
CCHCR1-210ENST00000464012 SNAPC4Q5SXM2 1469 aa34.22■■■■□ 3.07
CCHCR1-210ENST00000464012 FBLN2P98095 1184 aa34.22■■■■□ 3.07
CCHCR1-210ENST00000464012 PBRM1Q86U86 1689 aa34.2■■■■□ 3.07
CCHCR1-210ENST00000464012 BIVM-ERCC5R4GMW8 1640 aa34.17■■■■□ 3.06
CCHCR1-210ENST00000464012 GRIN2BQ13224 1484 aa34.14■■■■□ 3.06
CCHCR1-210ENST00000464012 TOP2BQ02880 1626 aa34.13■■■■□ 3.05
CCHCR1-210ENST00000464012 SYNJ1O43426 1573 aa34.13■■■■□ 3.05
CCHCR1-210ENST00000464012 ABCA10Q8WWZ4 1543 aa34.11■■■■□ 3.05
CCHCR1-210ENST00000464012 WRNQ14191 1432 aaPredicted RBP eCLIP34.11■■■■□ 3.05
CCHCR1-210ENST00000464012 ARHGEF11O15085 1522 aa34.1■■■■□ 3.05
CCHCR1-210ENST00000464012 MAGI1Q96QZ7 1491 aaPredicted RBP34.1■■■■□ 3.05
CCHCR1-210ENST00000464012 ABCA5Q8WWZ7 1642 aa34.1■■■■□ 3.05
CCHCR1-210ENST00000464012 GAPVD1Q14C86 1478 aa34.08■■■■□ 3.05
CCHCR1-210ENST00000464012 CHMP7Q8WUX9 453 aaPredicted RBP33.99■■■■□ 3.03
CCHCR1-210ENST00000464012 SYNJ2O15056 1496 aa33.98■■■■□ 3.03
CCHCR1-210ENST00000464012 CLASP1Q7Z460 1538 aa33.91■■■■□ 3.02
CCHCR1-210ENST00000464012 ADAMTS12P58397 1594 aa33.82■■■■□ 3
CCHCR1-210ENST00000464012 ARAP1Q96P48 1450 aa33.8■■■■□ 3
CCHCR1-210ENST00000464012 CYB5RLQ6IPT4 315 aa33.77■■■■□ 3
CCHCR1-210ENST00000464012 GRIN2AQ12879 1464 aa33.73■■■□□ 2.99
CCHCR1-210ENST00000464012 ERICH3Q5RHP9 1530 aa33.7■■■□□ 2.99
CCHCR1-210ENST00000464012 FHAD1B1AJZ9 1412 aa33.64■■■□□ 2.98
CCHCR1-210ENST00000464012 CEP170Q5SW79 1584 aa33.64■■■□□ 2.98
CCHCR1-210ENST00000464012 NUP160Q12769 1436 aa33.55■■■□□ 2.96
CCHCR1-210ENST00000464012 ERCC6L2Q5T890 1561 aa33.47■■■□□ 2.95
CCHCR1-210ENST00000464012 SHROOM2Q13796 1616 aa33.42■■■□□ 2.94
CCHCR1-210ENST00000464012 KIF27Q86VH2 1401 aa33.42■■■□□ 2.94
CCHCR1-210ENST00000464012 CUL7Q14999 1698 aa33.38■■■□□ 2.93
CCHCR1-210ENST00000464012 RUSC2Q8N2Y8 1516 aa33.34■■■□□ 2.93
CCHCR1-210ENST00000464012 TRHP20396 242 aaPredicted RBP33.31■■■□□ 2.92
CCHCR1-210ENST00000464012 IGF1RP08069 1367 aa33.3■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms