RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 NISCHQ9Y2I1 1504 aa43.12■■■■■ 4.49
VPS52-214ENST00000463486 CCDC180Q9P1Z9 1646 aa38.23■■■■□ 3.71
VPS52-214ENST00000463486 ABCC9O60706 1549 aa37.41■■■■□ 3.58
VPS52-214ENST00000463486 NACADO15069 1562 aa35.97■■■■□ 3.35
VPS52-214ENST00000463486 RB1CC1Q8TDY2 1594 aa35.96■■■■□ 3.35
VPS52-214ENST00000463486 ZCCHC6Q5VYS8 1495 aaKnown RBP35.92■■■■□ 3.34
VPS52-214ENST00000463486 DCAF8L2P0C7V8 631 aa35.91■■■■□ 3.34
VPS52-214ENST00000463486 MYO15BQ96JP2 1530 aa35.83■■■■□ 3.33
VPS52-214ENST00000463486 DCAF1Q9Y4B6 1507 aa35.69■■■■□ 3.3
VPS52-214ENST00000463486 UNC13AQ9UPW8 1703 aa35.18■■■■□ 3.22
VPS52-214ENST00000463486 PABPN1Q86U42 306 aaKnown RBP eCLIP35■■■■□ 3.19
VPS52-214ENST00000463486 BICRAQ9NZM4 1560 aa35■■■■□ 3.19
VPS52-214ENST00000463486 SCRIBQ14160 1630 aa34.89■■■■□ 3.18
VPS52-214ENST00000463486 SHROOM4Q9ULL8 1493 aa34.54■■■■□ 3.12
VPS52-214ENST00000463486 DNAJC5BQ9UF47 199 aa34.45■■■■□ 3.11
VPS52-214ENST00000463486 EIF4G1Q04637 1599 aaKnown RBP34■■■■□ 3.03
VPS52-214ENST00000463486 CC2D2AQ9P2K1 1620 aa33.84■■■■□ 3.01
VPS52-214ENST00000463486 CECR2Q9BXF3 1484 aa33.63■■■□□ 2.97
VPS52-214ENST00000463486 SMARCA4P51532 1647 aa33.41■■■□□ 2.94
VPS52-214ENST00000463486 BAZ1AQ9NRL2 1556 aaPredicted RBP33.36■■■□□ 2.93
VPS52-214ENST00000463486 ATAD2BQ9ULI0 1458 aa33.27■■■□□ 2.92
VPS52-214ENST00000463486 MROH2BQ7Z745 1585 aa33.26■■■□□ 2.91
VPS52-214ENST00000463486 NCAPD3P42695 1498 aa33.25■■■□□ 2.91
VPS52-214ENST00000463486 SMARCA2P51531 1590 aa33.15■■■□□ 2.9
VPS52-214ENST00000463486 PEG3Q9GZU2 1588 aa33.13■■■□□ 2.89
VPS52-214ENST00000463486 HMGXB3Q12766 1538 aa33.03■■■□□ 2.88
VPS52-214ENST00000463486 BAZ1BQ9UIG0 1483 aaKnown RBP32.92■■■□□ 2.86
VPS52-214ENST00000463486 RSF1Q96T23 1441 aaPredicted RBP32.91■■■□□ 2.86
VPS52-214ENST00000463486 WIZO95785 1651 aa32.85■■■□□ 2.85
VPS52-214ENST00000463486 TOP2AP11388 1531 aaKnown RBP32.49■■■□□ 2.79
VPS52-214ENST00000463486 NESP48681 1621 aa32.43■■■□□ 2.78
VPS52-214ENST00000463486 LAMC3Q9Y6N6 1575 aa32.29■■■□□ 2.76
VPS52-214ENST00000463486 CADPSQ9ULU8 1353 aa32.27■■■□□ 2.76
VPS52-214ENST00000463486 CCDC88BA6NC98 1476 aa32.16■■■□□ 2.74
VPS52-214ENST00000463486 ERCC6Q03468 1493 aa32.16■■■□□ 2.74
VPS52-214ENST00000463486 CFTRP13569 1480 aa32.1■■■□□ 2.73
VPS52-214ENST00000463486 PDS5BQ9NTI5 1447 aa32.08■■■□□ 2.73
VPS52-214ENST00000463486 SUPT5HO00267 1087 aaKnown RBP32.01■■■□□ 2.71
VPS52-214ENST00000463486 KIF21AQ7Z4S6 1674 aa31.98■■■□□ 2.71
VPS52-214ENST00000463486 THOC2Q8NI27 1593 aaKnown RBP31.9■■■□□ 2.7
VPS52-214ENST00000463486 CUX2O14529 1486 aa31.86■■■□□ 2.69
VPS52-214ENST00000463486 FANCD2Q9BXW9 1451 aa31.86■■■□□ 2.69
VPS52-214ENST00000463486 CEP164Q9UPV0 1460 aa31.78■■■□□ 2.68
VPS52-214ENST00000463486 MRC2Q9UBG0 1479 aa31.75■■■□□ 2.67
VPS52-214ENST00000463486 PRDM2Q13029 1718 aa31.72■■■□□ 2.67
VPS52-214ENST00000463486 WDR62O43379 1518 aa31.67■■■□□ 2.66
VPS52-214ENST00000463486 URB2Q14146 1524 aaKnown RBP31.59■■■□□ 2.65
VPS52-214ENST00000463486 TOPBP1Q92547 1522 aa31.37■■■□□ 2.61
VPS52-214ENST00000463486 ABCC8Q09428 1581 aa31.32■■■□□ 2.6
VPS52-214ENST00000463486 DNMBPQ6XZF7 1577 aa31.31■■■□□ 2.6
VPS52-214ENST00000463486 CUX1P39880 1505 aa31.18■■■□□ 2.58
VPS52-214ENST00000463486 IFT140Q96RY7 1462 aa31.14■■■□□ 2.57
VPS52-214ENST00000463486 POLA1P09884 1462 aaPredicted RBP31.12■■■□□ 2.57
VPS52-214ENST00000463486 TARBP1Q13395 1621 aaKnown RBP31.06■■■□□ 2.56
VPS52-214ENST00000463486 ZNF608Q9ULD9 1512 aaPredicted RBP31.05■■■□□ 2.56
VPS52-214ENST00000463486 FGD5Q6ZNL6 1462 aa31.02■■■□□ 2.56
VPS52-214ENST00000463486 RAD54L2Q9Y4B4 1467 aa31■■■□□ 2.55
VPS52-214ENST00000463486 SOGA1O94964 1423 aa30.98■■■□□ 2.55
VPS52-214ENST00000463486 WRNQ14191 1432 aaPredicted RBP eCLIP30.95■■■□□ 2.54
VPS52-214ENST00000463486 DNAJC5Q9H3Z4 198 aa30.92■■■□□ 2.54
VPS52-214ENST00000463486 SYNJ1O43426 1573 aa30.9■■■□□ 2.54
VPS52-214ENST00000463486 TOP2BQ02880 1626 aa30.89■■■□□ 2.54
VPS52-214ENST00000463486 AQRO60306 1485 aaKnown RBP eCLIP30.88■■■□□ 2.531e-8■■■■■ 28.6
VPS52-214ENST00000463486 BIVM-ERCC5R4GMW8 1640 aa30.87■■■□□ 2.53
VPS52-214ENST00000463486 EIF4G3O43432 1585 aaKnown RBP30.86■■■□□ 2.53
VPS52-214ENST00000463486 TDRD9Q8NDG6 1382 aaKnown RBP30.82■■■□□ 2.52
VPS52-214ENST00000463486 WDR97A6NE52 1622 aa30.76■■■□□ 2.52
VPS52-214ENST00000463486 ABCA10Q8WWZ4 1543 aa30.75■■■□□ 2.51
VPS52-214ENST00000463486 GAPVD1Q14C86 1478 aa30.61■■■□□ 2.49
VPS52-214ENST00000463486 ABCA5Q8WWZ7 1642 aa30.61■■■□□ 2.49
VPS52-214ENST00000463486 GRIN2BQ13224 1484 aa30.59■■■□□ 2.49
VPS52-214ENST00000463486 OSCARQ8IYS5 282 aa30.57■■■□□ 2.48
VPS52-214ENST00000463486 SNAPC4Q5SXM2 1469 aa30.54■■■□□ 2.48
VPS52-214ENST00000463486 MAGI1Q96QZ7 1491 aaPredicted RBP30.5■■■□□ 2.47
VPS52-214ENST00000463486 PBRM1Q86U86 1689 aa30.48■■■□□ 2.47
VPS52-214ENST00000463486 CHD1O14646 1710 aa30.44■■■□□ 2.46
VPS52-214ENST00000463486 FBLN2P98095 1184 aa30.4■■■□□ 2.46
VPS52-214ENST00000463486 SYNJ2O15056 1496 aa30.39■■■□□ 2.46
VPS52-214ENST00000463486 CHMP7Q8WUX9 453 aaPredicted RBP30.35■■■□□ 2.45
VPS52-214ENST00000463486 ERICH3Q5RHP9 1530 aa30.35■■■□□ 2.45
VPS52-214ENST00000463486 ADAMTS12P58397 1594 aa30.29■■■□□ 2.44
VPS52-214ENST00000463486 KIF27Q86VH2 1401 aa30.28■■■□□ 2.44
VPS52-214ENST00000463486 FHAD1B1AJZ9 1412 aa30.26■■■□□ 2.43
VPS52-214ENST00000463486 IGF1RP08069 1367 aa30.26■■■□□ 2.43
VPS52-214ENST00000463486 TRIM41Q8WV44 630 aa30.22■■■□□ 2.43
VPS52-214ENST00000463486 GRIN2AQ12879 1464 aa30.2■■■□□ 2.43
VPS52-214ENST00000463486 CLASP1Q7Z460 1538 aa30.19■■■□□ 2.42
VPS52-214ENST00000463486 RUSC2Q8N2Y8 1516 aa30.12■■■□□ 2.41
VPS52-214ENST00000463486 NUP160Q12769 1436 aa30.12■■■□□ 2.41
VPS52-214ENST00000463486 ARHGEF11O15085 1522 aa30.08■■■□□ 2.41
VPS52-214ENST00000463486 CEP170Q5SW79 1584 aa30.07■■■□□ 2.4
VPS52-214ENST00000463486 RIMBP3CA6NJZ7 1639 aa30.06■■■□□ 2.4
VPS52-214ENST00000463486 RIMBP3BA6NNM3 1639 aa30.06■■■□□ 2.4
VPS52-214ENST00000463486 RIMBP3Q9UFD9 1639 aa30.06■■■□□ 2.4
VPS52-214ENST00000463486 CUL7Q14999 1698 aa30.04■■■□□ 2.4
VPS52-214ENST00000463486 CARMIL1Q5VZK9 1371 aa30.01■■■□□ 2.39
VPS52-214ENST00000463486 CHIC1Q5VXU3 224 aa29.99■■■□□ 2.39
VPS52-214ENST00000463486 ARAP1Q96P48 1450 aa29.87■■■□□ 2.37
VPS52-214ENST00000463486 SHROOM2Q13796 1616 aa29.86■■■□□ 2.37
VPS52-214ENST00000463486 KIAA0586Q9BVV6 1533 aa29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms