RNA–Protein interactions for RNA: ENST00000463428.5

PHACTR4-203, Transcript of phosphatase and actin regulator 4, humanhuman

TSL 1 (best)

Gene PHACTR4, Length 1,421 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHACTR4-203ENST00000463428 NISCHQ9Y2I1 1504 aa32.94■■■□□ 2.86
PHACTR4-203ENST00000463428 CCDC180Q9P1Z9 1646 aa29.05■■■□□ 2.24
PHACTR4-203ENST00000463428 ABCC9O60706 1549 aa27.95■■■□□ 2.06
PHACTR4-203ENST00000463428 ZCCHC6Q5VYS8 1495 aaKnown RBP27.54■■■□□ 2
PHACTR4-203ENST00000463428 DCAF1Q9Y4B6 1507 aa27.29■■□□□ 1.96
PHACTR4-203ENST00000463428 DCAF8L2P0C7V8 631 aa27.27■■□□□ 1.96
PHACTR4-203ENST00000463428 MYO15BQ96JP2 1530 aa27.22■■□□□ 1.95
PHACTR4-203ENST00000463428 NACADO15069 1562 aa27.2■■□□□ 1.94
PHACTR4-203ENST00000463428 RB1CC1Q8TDY2 1594 aa27.09■■□□□ 1.93
PHACTR4-203ENST00000463428 UNC13AQ9UPW8 1703 aa26.55■■□□□ 1.84
PHACTR4-203ENST00000463428 SCRIBQ14160 1630 aa26.54■■□□□ 1.84
PHACTR4-203ENST00000463428 BICRAQ9NZM4 1560 aa26.32■■□□□ 1.8
PHACTR4-203ENST00000463428 SHROOM4Q9ULL8 1493 aa26.29■■□□□ 1.8
PHACTR4-203ENST00000463428 PABPN1Q86U42 306 aaKnown RBP eCLIP26.22■■□□□ 1.79
PHACTR4-203ENST00000463428 CECR2Q9BXF3 1484 aa25.64■■□□□ 1.69
PHACTR4-203ENST00000463428 EIF4G1Q04637 1599 aaKnown RBP25.55■■□□□ 1.68
PHACTR4-203ENST00000463428 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
PHACTR4-203ENST00000463428 SMARCA4P51532 1647 aa25.45■■□□□ 1.66
PHACTR4-203ENST00000463428 MROH2BQ7Z745 1585 aa25.42■■□□□ 1.66
PHACTR4-203ENST00000463428 CC2D2AQ9P2K1 1620 aa25.32■■□□□ 1.64
PHACTR4-203ENST00000463428 RSF1Q96T23 1441 aaPredicted RBP25.31■■□□□ 1.64
PHACTR4-203ENST00000463428 DNAJC5BQ9UF47 199 aa25.29■■□□□ 1.64
PHACTR4-203ENST00000463428 PEG3Q9GZU2 1588 aa25.21■■□□□ 1.63
PHACTR4-203ENST00000463428 ATAD2BQ9ULI0 1458 aa25.2■■□□□ 1.62
PHACTR4-203ENST00000463428 WIZO95785 1651 aa25.17■■□□□ 1.62
PHACTR4-203ENST00000463428 SMARCA2P51531 1590 aa25.15■■□□□ 1.62
PHACTR4-203ENST00000463428 NCAPD3P42695 1498 aa25.12■■□□□ 1.61
PHACTR4-203ENST00000463428 HMGXB3Q12766 1538 aa25.01■■□□□ 1.59
PHACTR4-203ENST00000463428 SUPT5HO00267 1087 aaKnown RBP24.98■■□□□ 1.59
PHACTR4-203ENST00000463428 BAZ1BQ9UIG0 1483 aaKnown RBP24.97■■□□□ 1.59
PHACTR4-203ENST00000463428 TOP2AP11388 1531 aaKnown RBP24.9■■□□□ 1.58
PHACTR4-203ENST00000463428 CCDC88BA6NC98 1476 aa24.63■■□□□ 1.53
PHACTR4-203ENST00000463428 CADPSQ9ULU8 1353 aa24.4■■□□□ 1.5
PHACTR4-203ENST00000463428 NESP48681 1621 aa24.37■■□□□ 1.49
PHACTR4-203ENST00000463428 CFTRP13569 1480 aa24.36■■□□□ 1.49
PHACTR4-203ENST00000463428 LAMC3Q9Y6N6 1575 aa24.34■■□□□ 1.49
PHACTR4-203ENST00000463428 PRDM2Q13029 1718 aa24.21■■□□□ 1.47
PHACTR4-203ENST00000463428 PDS5BQ9NTI5 1447 aa24.14■■□□□ 1.46
PHACTR4-203ENST00000463428 FANCD2Q9BXW9 1451 aa24.1■■□□□ 1.45
PHACTR4-203ENST00000463428 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.44
PHACTR4-203ENST00000463428 CEP164Q9UPV0 1460 aa24.01■■□□□ 1.43
PHACTR4-203ENST00000463428 ERCC6Q03468 1493 aa23.99■■□□□ 1.43
PHACTR4-203ENST00000463428 MRC2Q9UBG0 1479 aa23.88■■□□□ 1.41
PHACTR4-203ENST00000463428 THOC2Q8NI27 1593 aaKnown RBP23.87■■□□□ 1.41
PHACTR4-203ENST00000463428 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
PHACTR4-203ENST00000463428 URB2Q14146 1524 aaKnown RBP23.86■■□□□ 1.41
PHACTR4-203ENST00000463428 CUX1P39880 1505 aa23.8■■□□□ 1.4
PHACTR4-203ENST00000463428 WRNQ14191 1432 aaPredicted RBP eCLIP23.8■■□□□ 1.4
PHACTR4-203ENST00000463428 WDR62O43379 1518 aa23.8■■□□□ 1.4
PHACTR4-203ENST00000463428 DNMBPQ6XZF7 1577 aa23.79■■□□□ 1.4
PHACTR4-203ENST00000463428 TOPBP1Q92547 1522 aa23.78■■□□□ 1.4
PHACTR4-203ENST00000463428 SYNJ1O43426 1573 aa23.74■■□□□ 1.39
PHACTR4-203ENST00000463428 TOP2BQ02880 1626 aa23.72■■□□□ 1.39
PHACTR4-203ENST00000463428 BIVM-ERCC5R4GMW8 1640 aa23.72■■□□□ 1.39
PHACTR4-203ENST00000463428 CHIC1Q5VXU3 224 aa23.67■■□□□ 1.38
PHACTR4-203ENST00000463428 FGD5Q6ZNL6 1462 aa23.63■■□□□ 1.37
PHACTR4-203ENST00000463428 POLA1P09884 1462 aaPredicted RBP23.62■■□□□ 1.37
PHACTR4-203ENST00000463428 CUX2O14529 1486 aa23.6■■□□□ 1.37
PHACTR4-203ENST00000463428 TRIM41Q8WV44 630 aa23.57■■□□□ 1.36
PHACTR4-203ENST00000463428 SOGA1O94964 1423 aa23.52■■□□□ 1.36
PHACTR4-203ENST00000463428 RAD54L2Q9Y4B4 1467 aa23.51■■□□□ 1.35
PHACTR4-203ENST00000463428 TARBP1Q13395 1621 aaKnown RBP23.51■■□□□ 1.35
PHACTR4-203ENST00000463428 IFT140Q96RY7 1462 aa23.49■■□□□ 1.35
PHACTR4-203ENST00000463428 WDR97A6NE52 1622 aa23.43■■□□□ 1.34
PHACTR4-203ENST00000463428 ABCA10Q8WWZ4 1543 aa23.42■■□□□ 1.34
PHACTR4-203ENST00000463428 ZNF608Q9ULD9 1512 aaPredicted RBP23.38■■□□□ 1.33
PHACTR4-203ENST00000463428 TDRD9Q8NDG6 1382 aaKnown RBP23.33■■□□□ 1.33
PHACTR4-203ENST00000463428 AQRO60306 1485 aaKnown RBP eCLIP23.3■■□□□ 1.323e-6■■■■□ 24.1
PHACTR4-203ENST00000463428 ABCA5Q8WWZ7 1642 aa23.29■■□□□ 1.32
PHACTR4-203ENST00000463428 EIF4G3O43432 1585 aaKnown RBP23.28■■□□□ 1.32
PHACTR4-203ENST00000463428 RUSC2Q8N2Y8 1516 aa23.26■■□□□ 1.31
PHACTR4-203ENST00000463428 KIF27Q86VH2 1401 aa23.26■■□□□ 1.31
PHACTR4-203ENST00000463428 GAPVD1Q14C86 1478 aa23.25■■□□□ 1.31
PHACTR4-203ENST00000463428 PBRM1Q86U86 1689 aa23.18■■□□□ 1.3
PHACTR4-203ENST00000463428 GRIN2BQ13224 1484 aa23.17■■□□□ 1.3
PHACTR4-203ENST00000463428 IGF1RP08069 1367 aa23.16■■□□□ 1.3
PHACTR4-203ENST00000463428 ERICH3Q5RHP9 1530 aa23.14■■□□□ 1.3
PHACTR4-203ENST00000463428 EEA1Q15075 1411 aa23.14■■□□□ 1.29
PHACTR4-203ENST00000463428 SNAPC4Q5SXM2 1469 aa23.08■■□□□ 1.29
PHACTR4-203ENST00000463428 FAM9AQ8IZU1 332 aaPredicted RBP23.08■■□□□ 1.28
PHACTR4-203ENST00000463428 CSRNP3Q8WYN3 585 aa23.07■■□□□ 1.28
PHACTR4-203ENST00000463428 MAGI1Q96QZ7 1491 aaPredicted RBP23.06■■□□□ 1.28
PHACTR4-203ENST00000463428 ADAMTS12P58397 1594 aa23.02■■□□□ 1.28
PHACTR4-203ENST00000463428 CUL7Q14999 1698 aa23.01■■□□□ 1.27
PHACTR4-203ENST00000463428 FHAD1B1AJZ9 1412 aa23■■□□□ 1.27
PHACTR4-203ENST00000463428 CARMIL1Q5VZK9 1371 aa23■■□□□ 1.27
PHACTR4-203ENST00000463428 PRXQ9BXM0 1461 aa22.98■■□□□ 1.27
PHACTR4-203ENST00000463428 SYNJ2O15056 1496 aa22.97■■□□□ 1.27
PHACTR4-203ENST00000463428 RAPGEF2Q9Y4G8 1499 aa22.91■■□□□ 1.26
PHACTR4-203ENST00000463428 CHD1O14646 1710 aa22.91■■□□□ 1.26
PHACTR4-203ENST00000463428 CHMP7Q8WUX9 453 aaPredicted RBP22.9■■□□□ 1.26
PHACTR4-203ENST00000463428 KIF21BO75037 1637 aa22.89■■□□□ 1.25
PHACTR4-203ENST00000463428 GRIN2AQ12879 1464 aa22.89■■□□□ 1.25
PHACTR4-203ENST00000463428 FBLN2P98095 1184 aa22.87■■□□□ 1.25
PHACTR4-203ENST00000463428 NUP160Q12769 1436 aa22.78■■□□□ 1.24
PHACTR4-203ENST00000463428 CEP170Q5SW79 1584 aa22.77■■□□□ 1.24
PHACTR4-203ENST00000463428 GOLGA3Q08378 1498 aa22.76■■□□□ 1.23
PHACTR4-203ENST00000463428 OSCARQ8IYS5 282 aa22.74■■□□□ 1.23
PHACTR4-203ENST00000463428 EHMT2Q96KQ7 1210 aa22.72■■□□□ 1.23
PHACTR4-203ENST00000463428 LOC105371045A0A1W2PR82 267 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms