RNA–Protein interactions for RNA: ENST00000463060.5

COL6A1-202, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 5

Gene COL6A1, Length 863 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-202ENST00000463060 NISCHQ9Y2I1 1504 aa33.82■■■■□ 3
COL6A1-202ENST00000463060 CCDC180Q9P1Z9 1646 aa29.74■■■□□ 2.35
COL6A1-202ENST00000463060 ABCC9O60706 1549 aa28.49■■■□□ 2.15
COL6A1-202ENST00000463060 ZCCHC6Q5VYS8 1495 aaKnown RBP28.29■■■□□ 2.12
COL6A1-202ENST00000463060 DCAF1Q9Y4B6 1507 aa28.03■■■□□ 2.08
COL6A1-202ENST00000463060 MYO15BQ96JP2 1530 aa27.92■■■□□ 2.06
COL6A1-202ENST00000463060 DCAF8L2P0C7V8 631 aa27.92■■■□□ 2.06
COL6A1-202ENST00000463060 NACADO15069 1562 aa27.82■■■□□ 2.04
COL6A1-202ENST00000463060 RB1CC1Q8TDY2 1594 aa27.67■■■□□ 2.02
COL6A1-202ENST00000463060 SCRIBQ14160 1630 aa27.16■■□□□ 1.94
COL6A1-202ENST00000463060 UNC13AQ9UPW8 1703 aa27.08■■□□□ 1.93
COL6A1-202ENST00000463060 SHROOM4Q9ULL8 1493 aa27.03■■□□□ 1.92
COL6A1-202ENST00000463060 BICRAQ9NZM4 1560 aa26.9■■□□□ 1.9
COL6A1-202ENST00000463060 PABPN1Q86U42 306 aaKnown RBP eCLIP26.77■■□□□ 1.882e-11■■□□□ 13.8
COL6A1-202ENST00000463060 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
COL6A1-202ENST00000463060 DNAJC5BQ9UF47 199 aa26.17■■□□□ 1.78
COL6A1-202ENST00000463060 BAZ1AQ9NRL2 1556 aaPredicted RBP26.13■■□□□ 1.77
COL6A1-202ENST00000463060 EIF4G1Q04637 1599 aaKnown RBP26.08■■□□□ 1.77
COL6A1-202ENST00000463060 MROH2BQ7Z745 1585 aa26.08■■□□□ 1.77
COL6A1-202ENST00000463060 SMARCA4P51532 1647 aa26.07■■□□□ 1.76
COL6A1-202ENST00000463060 RSF1Q96T23 1441 aaPredicted RBP26.03■■□□□ 1.76
COL6A1-202ENST00000463060 PEG3Q9GZU2 1588 aa25.86■■□□□ 1.73
COL6A1-202ENST00000463060 CC2D2AQ9P2K1 1620 aa25.81■■□□□ 1.72
COL6A1-202ENST00000463060 WIZO95785 1651 aa25.8■■□□□ 1.72
COL6A1-202ENST00000463060 ATAD2BQ9ULI0 1458 aa25.8■■□□□ 1.72
COL6A1-202ENST00000463060 SUPT5HO00267 1087 aaKnown RBP25.77■■□□□ 1.72
COL6A1-202ENST00000463060 SMARCA2P51531 1590 aa25.76■■□□□ 1.71
COL6A1-202ENST00000463060 NCAPD3P42695 1498 aa25.72■■□□□ 1.71
COL6A1-202ENST00000463060 HMGXB3Q12766 1538 aa25.6■■□□□ 1.69
COL6A1-202ENST00000463060 BAZ1BQ9UIG0 1483 aaKnown RBP25.57■■□□□ 1.68
COL6A1-202ENST00000463060 TOP2AP11388 1531 aaKnown RBP25.55■■□□□ 1.68
COL6A1-202ENST00000463060 CCDC88BA6NC98 1476 aa25.29■■□□□ 1.64
COL6A1-202ENST00000463060 CADPSQ9ULU8 1353 aa24.99■■□□□ 1.59
COL6A1-202ENST00000463060 CFTRP13569 1480 aa24.97■■□□□ 1.59
COL6A1-202ENST00000463060 NESP48681 1621 aa24.88■■□□□ 1.57
COL6A1-202ENST00000463060 LAMC3Q9Y6N6 1575 aa24.88■■□□□ 1.57
COL6A1-202ENST00000463060 PRDM2Q13029 1718 aa24.75■■□□□ 1.55
COL6A1-202ENST00000463060 PDS5BQ9NTI5 1447 aa24.69■■□□□ 1.54
COL6A1-202ENST00000463060 FANCD2Q9BXW9 1451 aa24.66■■□□□ 1.54
COL6A1-202ENST00000463060 KIF21AQ7Z4S6 1674 aa24.56■■□□□ 1.52
COL6A1-202ENST00000463060 CEP164Q9UPV0 1460 aa24.54■■□□□ 1.52
COL6A1-202ENST00000463060 ABCC8Q09428 1581 aa24.52■■□□□ 1.52
COL6A1-202ENST00000463060 CHIC1Q5VXU3 224 aa24.51■■□□□ 1.51
COL6A1-202ENST00000463060 WRNQ14191 1432 aaPredicted RBP eCLIP24.47■■□□□ 1.51
COL6A1-202ENST00000463060 ERCC6Q03468 1493 aa24.45■■□□□ 1.5
COL6A1-202ENST00000463060 CUX1P39880 1505 aa24.42■■□□□ 1.5
COL6A1-202ENST00000463060 URB2Q14146 1524 aaKnown RBP24.41■■□□□ 1.5
COL6A1-202ENST00000463060 MRC2Q9UBG0 1479 aa24.39■■□□□ 1.5
COL6A1-202ENST00000463060 SYNJ1O43426 1573 aa24.39■■□□□ 1.5
COL6A1-202ENST00000463060 TOP2BQ02880 1626 aa24.36■■□□□ 1.49
COL6A1-202ENST00000463060 DNMBPQ6XZF7 1577 aa24.36■■□□□ 1.49
COL6A1-202ENST00000463060 BIVM-ERCC5R4GMW8 1640 aa24.35■■□□□ 1.49
COL6A1-202ENST00000463060 TOPBP1Q92547 1522 aa24.35■■□□□ 1.49
COL6A1-202ENST00000463060 THOC2Q8NI27 1593 aaKnown RBP24.33■■□□□ 1.49
COL6A1-202ENST00000463060 TRIM41Q8WV44 630 aa24.31■■□□□ 1.48
COL6A1-202ENST00000463060 WDR62O43379 1518 aa24.3■■□□□ 1.48
COL6A1-202ENST00000463060 FGD5Q6ZNL6 1462 aa24.21■■□□□ 1.47
COL6A1-202ENST00000463060 POLA1P09884 1462 aaPredicted RBP24.19■■□□□ 1.46
COL6A1-202ENST00000463060 CUX2O14529 1486 aa24.14■■□□□ 1.46
COL6A1-202ENST00000463060 DNAJC5Q9H3Z4 198 aa24.14■■□□□ 1.45
COL6A1-202ENST00000463060 SOGA1O94964 1423 aa24.1■■□□□ 1.45
COL6A1-202ENST00000463060 RAD54L2Q9Y4B4 1467 aa24.08■■□□□ 1.45
COL6A1-202ENST00000463060 TARBP1Q13395 1621 aaKnown RBP24.06■■□□□ 1.44
COL6A1-202ENST00000463060 ABCA10Q8WWZ4 1543 aa24.03■■□□□ 1.44
COL6A1-202ENST00000463060 IFT140Q96RY7 1462 aa24.02■■□□□ 1.44
COL6A1-202ENST00000463060 WDR97A6NE52 1622 aa23.98■■□□□ 1.43
COL6A1-202ENST00000463060 RUSC2Q8N2Y8 1516 aa23.94■■□□□ 1.42
COL6A1-202ENST00000463060 TDRD9Q8NDG6 1382 aaKnown RBP23.9■■□□□ 1.42
COL6A1-202ENST00000463060 ZNF608Q9ULD9 1512 aaPredicted RBP23.89■■□□□ 1.42
COL6A1-202ENST00000463060 KIF27Q86VH2 1401 aa23.89■■□□□ 1.41
COL6A1-202ENST00000463060 EEA1Q15075 1411 aa23.87■■□□□ 1.41
COL6A1-202ENST00000463060 ABCA5Q8WWZ7 1642 aa23.86■■□□□ 1.41
COL6A1-202ENST00000463060 AQRO60306 1485 aaKnown RBP eCLIP23.84■■□□□ 1.41
COL6A1-202ENST00000463060 GAPVD1Q14C86 1478 aa23.82■■□□□ 1.4
COL6A1-202ENST00000463060 IGF1RP08069 1367 aa23.8■■□□□ 1.4
COL6A1-202ENST00000463060 CSRNP3Q8WYN3 585 aa23.79■■□□□ 1.4
COL6A1-202ENST00000463060 FAM9AQ8IZU1 332 aaPredicted RBP23.78■■□□□ 1.4
COL6A1-202ENST00000463060 EIF4G3O43432 1585 aaKnown RBP23.78■■□□□ 1.4
COL6A1-202ENST00000463060 ERICH3Q5RHP9 1530 aa23.74■■□□□ 1.39
COL6A1-202ENST00000463060 GRIN2BQ13224 1484 aa23.73■■□□□ 1.39
COL6A1-202ENST00000463060 PBRM1Q86U86 1689 aa23.68■■□□□ 1.38
COL6A1-202ENST00000463060 PRXQ9BXM0 1461 aa23.66■■□□□ 1.38
COL6A1-202ENST00000463060 CARMIL1Q5VZK9 1371 aa23.63■■□□□ 1.37
COL6A1-202ENST00000463060 CUL7Q14999 1698 aa23.6■■□□□ 1.37
COL6A1-202ENST00000463060 SNAPC4Q5SXM2 1469 aa23.6■■□□□ 1.37
COL6A1-202ENST00000463060 MAGI1Q96QZ7 1491 aaPredicted RBP23.6■■□□□ 1.37
COL6A1-202ENST00000463060 FHAD1B1AJZ9 1412 aa23.58■■□□□ 1.36
COL6A1-202ENST00000463060 KIF21BO75037 1637 aa23.57■■□□□ 1.36
COL6A1-202ENST00000463060 ADAMTS12P58397 1594 aa23.56■■□□□ 1.36
COL6A1-202ENST00000463060 RAPGEF2Q9Y4G8 1499 aa23.54■■□□□ 1.36
COL6A1-202ENST00000463060 SYNJ2O15056 1496 aa23.5■■□□□ 1.35
COL6A1-202ENST00000463060 LOC105371045A0A1W2PR82 267 aa23.5■■□□□ 1.35
COL6A1-202ENST00000463060 GOLGA3Q08378 1498 aa23.47■■□□□ 1.35
COL6A1-202ENST00000463060 CHMP7Q8WUX9 453 aaPredicted RBP23.43■■□□□ 1.34
COL6A1-202ENST00000463060 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
COL6A1-202ENST00000463060 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
COL6A1-202ENST00000463060 FBLN2P98095 1184 aa23.36■■□□□ 1.33
COL6A1-202ENST00000463060 CHD1O14646 1710 aa23.35■■□□□ 1.33
COL6A1-202ENST00000463060 UBTFP17480 764 aaKnown RBP23.34■■□□□ 1.33
COL6A1-202ENST00000463060 TNIKQ9UKE5 1360 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 707 ms