RNA–Protein interactions for RNA: ENST00000462321.1

PTPN18-207, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

TSL 2

Gene PTPN18, Length 1,717 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-207ENST00000462321 NISCHQ9Y2I1 1504 aa46.09■■■■■ 4.97
PTPN18-207ENST00000462321 CCDC180Q9P1Z9 1646 aa40.43■■■■■ 4.06
PTPN18-207ENST00000462321 ZCCHC6Q5VYS8 1495 aaKnown RBP38.66■■■■□ 3.78
PTPN18-207ENST00000462321 ABCC9O60706 1549 aa38.49■■■■□ 3.75
PTPN18-207ENST00000462321 DCAF1Q9Y4B6 1507 aa38.18■■■■□ 3.7
PTPN18-207ENST00000462321 DCAF8L2P0C7V8 631 aa38.03■■■■□ 3.68
PTPN18-207ENST00000462321 MYO15BQ96JP2 1530 aa37.92■■■■□ 3.66
PTPN18-207ENST00000462321 NACADO15069 1562 aa37.75■■■■□ 3.63
PTPN18-207ENST00000462321 RB1CC1Q8TDY2 1594 aa37.51■■■■□ 3.6
PTPN18-207ENST00000462321 SHROOM4Q9ULL8 1493 aa37.15■■■■□ 3.54
PTPN18-207ENST00000462321 SCRIBQ14160 1630 aa37.02■■■■□ 3.52
PTPN18-207ENST00000462321 UNC13AQ9UPW8 1703 aa36.63■■■■□ 3.45
PTPN18-207ENST00000462321 BICRAQ9NZM4 1560 aa36.34■■■■□ 3.41
PTPN18-207ENST00000462321 PABPN1Q86U42 306 aaKnown RBP eCLIP36.17■■■■□ 3.382e-6■■□□□ 13.9
PTPN18-207ENST00000462321 CECR2Q9BXF3 1484 aa35.79■■■■□ 3.32
PTPN18-207ENST00000462321 BAZ1AQ9NRL2 1556 aaPredicted RBP35.64■■■■□ 3.3
PTPN18-207ENST00000462321 RSF1Q96T23 1441 aaPredicted RBP35.57■■■■□ 3.28
PTPN18-207ENST00000462321 MROH2BQ7Z745 1585 aa35.55■■■■□ 3.28
PTPN18-207ENST00000462321 SUPT5HO00267 1087 aaKnown RBP35.53■■■■□ 3.28
PTPN18-207ENST00000462321 SMARCA4P51532 1647 aa35.51■■■■□ 3.27
PTPN18-207ENST00000462321 EIF4G1Q04637 1599 aaKnown RBP35.3■■■■□ 3.24
PTPN18-207ENST00000462321 WIZO95785 1651 aa35.2■■■■□ 3.23
PTPN18-207ENST00000462321 PEG3Q9GZU2 1588 aa35.15■■■■□ 3.22
PTPN18-207ENST00000462321 SMARCA2P51531 1590 aa35.04■■■■□ 3.2
PTPN18-207ENST00000462321 ATAD2BQ9ULI0 1458 aa35.04■■■■□ 3.2
PTPN18-207ENST00000462321 TOP2AP11388 1531 aaKnown RBP34.91■■■■□ 3.18
PTPN18-207ENST00000462321 CC2D2AQ9P2K1 1620 aa34.86■■■■□ 3.17
PTPN18-207ENST00000462321 NCAPD3P42695 1498 aa34.83■■■■□ 3.17
PTPN18-207ENST00000462321 BAZ1BQ9UIG0 1483 aaKnown RBP34.81■■■■□ 3.16
PTPN18-207ENST00000462321 HMGXB3Q12766 1538 aa34.78■■■■□ 3.16
PTPN18-207ENST00000462321 CCDC88BA6NC98 1476 aa34.5■■■■□ 3.11
PTPN18-207ENST00000462321 DNAJC5BQ9UF47 199 aa34.27■■■■□ 3.08
PTPN18-207ENST00000462321 CFTRP13569 1480 aa33.94■■■■□ 3.02
PTPN18-207ENST00000462321 CADPSQ9ULU8 1353 aa33.89■■■■□ 3.02
PTPN18-207ENST00000462321 CHIC1Q5VXU3 224 aa33.84■■■■□ 3.01
PTPN18-207ENST00000462321 LAMC3Q9Y6N6 1575 aa33.72■■■□□ 2.99
PTPN18-207ENST00000462321 PRDM2Q13029 1718 aa33.7■■■□□ 2.99
PTPN18-207ENST00000462321 NESP48681 1621 aa33.65■■■□□ 2.98
PTPN18-207ENST00000462321 ABCC8Q09428 1581 aa33.6■■■□□ 2.97
PTPN18-207ENST00000462321 TRIM41Q8WV44 630 aa33.5■■■□□ 2.95
PTPN18-207ENST00000462321 FANCD2Q9BXW9 1451 aa33.5■■■□□ 2.95
PTPN18-207ENST00000462321 WRNQ14191 1432 aaPredicted RBP eCLIP33.5■■■□□ 2.95
PTPN18-207ENST00000462321 PDS5BQ9NTI5 1447 aa33.47■■■□□ 2.95
PTPN18-207ENST00000462321 SYNJ1O43426 1573 aa33.36■■■□□ 2.93
PTPN18-207ENST00000462321 CEP164Q9UPV0 1460 aa33.35■■■□□ 2.93
PTPN18-207ENST00000462321 TOP2BQ02880 1626 aa33.29■■■□□ 2.92
PTPN18-207ENST00000462321 CUX1P39880 1505 aa33.28■■■□□ 2.92
PTPN18-207ENST00000462321 BIVM-ERCC5R4GMW8 1640 aa33.27■■■□□ 2.92
PTPN18-207ENST00000462321 KIF21AQ7Z4S6 1674 aa33.25■■■□□ 2.91
PTPN18-207ENST00000462321 DNMBPQ6XZF7 1577 aa33.15■■■□□ 2.9
PTPN18-207ENST00000462321 URB2Q14146 1524 aaKnown RBP33.1■■■□□ 2.89
PTPN18-207ENST00000462321 TOPBP1Q92547 1522 aa33.1■■■□□ 2.89
PTPN18-207ENST00000462321 ERCC6Q03468 1493 aa33.09■■■□□ 2.89
PTPN18-207ENST00000462321 MRC2Q9UBG0 1479 aa33.06■■■□□ 2.88
PTPN18-207ENST00000462321 FGD5Q6ZNL6 1462 aa32.99■■■□□ 2.87
PTPN18-207ENST00000462321 WDR62O43379 1518 aa32.92■■■□□ 2.86
PTPN18-207ENST00000462321 POLA1P09884 1462 aaPredicted RBP32.9■■■□□ 2.86
PTPN18-207ENST00000462321 SOGA1O94964 1423 aa32.89■■■□□ 2.86
PTPN18-207ENST00000462321 THOC2Q8NI27 1593 aaKnown RBP32.89■■■□□ 2.85
PTPN18-207ENST00000462321 EEA1Q15075 1411 aa32.85■■■□□ 2.85
PTPN18-207ENST00000462321 FAM9AQ8IZU1 332 aaPredicted RBP32.79■■■□□ 2.84
PTPN18-207ENST00000462321 RUSC2Q8N2Y8 1516 aa32.76■■■□□ 2.84
PTPN18-207ENST00000462321 RAD54L2Q9Y4B4 1467 aa32.74■■■□□ 2.83
PTPN18-207ENST00000462321 ABCA10Q8WWZ4 1543 aa32.73■■■□□ 2.83
PTPN18-207ENST00000462321 KIF27Q86VH2 1401 aa32.71■■■□□ 2.83
PTPN18-207ENST00000462321 CUX2O14529 1486 aa32.69■■■□□ 2.82
PTPN18-207ENST00000462321 WDR97A6NE52 1622 aa32.64■■■□□ 2.82
PTPN18-207ENST00000462321 TARBP1Q13395 1621 aaKnown RBP32.63■■■□□ 2.81
PTPN18-207ENST00000462321 CSRNP3Q8WYN3 585 aa32.62■■■□□ 2.81
PTPN18-207ENST00000462321 IFT140Q96RY7 1462 aa32.6■■■□□ 2.81
PTPN18-207ENST00000462321 ABCA5Q8WWZ7 1642 aa32.49■■■□□ 2.79
PTPN18-207ENST00000462321 LOC105371045A0A1W2PR82 267 aa32.46■■■□□ 2.79
PTPN18-207ENST00000462321 TDRD9Q8NDG6 1382 aaKnown RBP32.45■■■□□ 2.79
PTPN18-207ENST00000462321 IGF1RP08069 1367 aa32.43■■■□□ 2.78
PTPN18-207ENST00000462321 GAPVD1Q14C86 1478 aa32.42■■■□□ 2.78
PTPN18-207ENST00000462321 KIF21BO75037 1637 aa32.42■■■□□ 2.78
PTPN18-207ENST00000462321 PRXQ9BXM0 1461 aa32.39■■■□□ 2.78
PTPN18-207ENST00000462321 ZNF608Q9ULD9 1512 aaPredicted RBP32.36■■■□□ 2.77
PTPN18-207ENST00000462321 ERICH3Q5RHP9 1530 aa32.35■■■□□ 2.77
PTPN18-207ENST00000462321 GOLGA3Q08378 1498 aa32.34■■■□□ 2.77
PTPN18-207ENST00000462321 AQRO60306 1485 aaKnown RBP eCLIP32.33■■■□□ 2.77
PTPN18-207ENST00000462321 EIF4G3O43432 1585 aaKnown RBP32.28■■■□□ 2.76
PTPN18-207ENST00000462321 EHMT2Q96KQ7 1210 aa32.28■■■□□ 2.76
PTPN18-207ENST00000462321 RAPGEF2Q9Y4G8 1499 aa32.26■■■□□ 2.76
PTPN18-207ENST00000462321 CUL7Q14999 1698 aa32.26■■■□□ 2.75
PTPN18-207ENST00000462321 CARMIL1Q5VZK9 1371 aa32.26■■■□□ 2.75
PTPN18-207ENST00000462321 GRIN2BQ13224 1484 aa32.26■■■□□ 2.75
PTPN18-207ENST00000462321 PBRM1Q86U86 1689 aa32.24■■■□□ 2.75
PTPN18-207ENST00000462321 TNIKQ9UKE5 1360 aa32.15■■■□□ 2.74
PTPN18-207ENST00000462321 UBTFP17480 764 aaKnown RBP32.12■■■□□ 2.73
PTPN18-207ENST00000462321 ADAMTS12P58397 1594 aa32.1■■■□□ 2.73
PTPN18-207ENST00000462321 FHAD1B1AJZ9 1412 aa32.09■■■□□ 2.73
PTPN18-207ENST00000462321 SNAPC4Q5SXM2 1469 aa32.07■■■□□ 2.72
PTPN18-207ENST00000462321 MAGI1Q96QZ7 1491 aaPredicted RBP32.05■■■□□ 2.72
PTPN18-207ENST00000462321 CEP162Q5TB80 1403 aa31.93■■■□□ 2.7
PTPN18-207ENST00000462321 SYNJ2O15056 1496 aa31.91■■■□□ 2.7
PTPN18-207ENST00000462321 GRIN2AQ12879 1464 aa31.85■■■□□ 2.69
PTPN18-207ENST00000462321 CHMP7Q8WUX9 453 aaPredicted RBP31.8■■■□□ 2.68
PTPN18-207ENST00000462321 CTTNBP2Q8WZ74 1663 aa31.79■■■□□ 2.68
PTPN18-207ENST00000462321 CLIP1P30622 1438 aa31.78■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms