RNA–Protein interactions for RNA: ENST00000462198.5

SMARCC1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 785 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-204ENST00000462198 AEBP2Q6ZN18 517 aaPredicted RBP20.1■□□□□ 0.81
SMARCC1-204ENST00000462198 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
SMARCC1-204ENST00000462198 SENP3Q9H4L4 574 aaPredicted RBP17.26■□□□□ 0.35
SMARCC1-204ENST00000462198 PHF23Q9BUL5 403 aaPredicted RBP16.9■□□□□ 0.3
SMARCC1-204ENST00000462198 FOXD1Q16676 465 aa16.13■□□□□ 0.17
SMARCC1-204ENST00000462198 POTEDQ86YR6 584 aa15.96■□□□□ 0.15
SMARCC1-204ENST00000462198 MSH5O43196 834 aa15.35■□□□□ 0.05
SMARCC1-204ENST00000462198 PIAS4Q8N2W9 510 aaPredicted RBP14.91□□□□□ -0.02
SMARCC1-204ENST00000462198 NISCHQ9Y2I1 1504 aa14.91□□□□□ -0.02
SMARCC1-204ENST00000462198 PPP6R1Q9UPN7 881 aa14.61□□□□□ -0.07
SMARCC1-204ENST00000462198 PLPPR3Q6T4P5 718 aa14.53□□□□□ -0.08
SMARCC1-204ENST00000462198 ADRA2BP18089 450 aa14.51□□□□□ -0.09
SMARCC1-204ENST00000462198 ABCC9O60706 1549 aa14.22□□□□□ -0.13
SMARCC1-204ENST00000462198 DNAJC5BQ9UF47 199 aa13.94□□□□□ -0.18
SMARCC1-204ENST00000462198 DMRT2Q9Y5R5 561 aa13.61□□□□□ -0.23
SMARCC1-204ENST00000462198 CCDC180Q9P1Z9 1646 aa13.57□□□□□ -0.24
SMARCC1-204ENST00000462198 MAPK8IP2Q13387 824 aaPredicted RBP13.49□□□□□ -0.25
SMARCC1-204ENST00000462198 CACNB1Q02641 598 aaPredicted RBP13.47□□□□□ -0.25
SMARCC1-204ENST00000462198 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
SMARCC1-204ENST00000462198 RB1CC1Q8TDY2 1594 aa13.24□□□□□ -0.29
SMARCC1-204ENST00000462198 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
SMARCC1-204ENST00000462198 DNAJC5Q9H3Z4 198 aa13.22□□□□□ -0.29
SMARCC1-204ENST00000462198 RNF39Q9H2S5 420 aa13.05□□□□□ -0.32
SMARCC1-204ENST00000462198 NACADO15069 1562 aa13□□□□□ -0.33
SMARCC1-204ENST00000462198 DCAF8L2P0C7V8 631 aa13□□□□□ -0.33
SMARCC1-204ENST00000462198 DCAF8L1A6NGE4 600 aa12.96□□□□□ -0.33
SMARCC1-204ENST00000462198 UNC13AQ9UPW8 1703 aa12.95□□□□□ -0.34
SMARCC1-204ENST00000462198 HOXD11P31277 338 aaPredicted RBP12.88□□□□□ -0.35
SMARCC1-204ENST00000462198 BICRAQ9NZM4 1560 aa12.88□□□□□ -0.35
SMARCC1-204ENST00000462198 CECR2Q9BXF3 1484 aa12.85□□□□□ -0.35
SMARCC1-204ENST00000462198 C1QBPQ07021 282 aaKnown RBP12.82□□□□□ -0.36
SMARCC1-204ENST00000462198 CC2D2AQ9P2K1 1620 aa12.79□□□□□ -0.36
SMARCC1-204ENST00000462198 PPP4R3CPQ6ZMV5 832 aa12.64□□□□□ -0.39
SMARCC1-204ENST00000462198 RNF216Q9NWF9 866 aaPredicted RBP12.6□□□□□ -0.39
SMARCC1-204ENST00000462198 MYO15BQ96JP2 1530 aa12.6□□□□□ -0.39
SMARCC1-204ENST00000462198 EIF4G1Q04637 1599 aaKnown RBP12.6□□□□□ -0.39
SMARCC1-204ENST00000462198 SHROOM4Q9ULL8 1493 aa12.57□□□□□ -0.4
SMARCC1-204ENST00000462198 CNKSR2Q8WXI2 1034 aa12.56□□□□□ -0.4
SMARCC1-204ENST00000462198 CUX2O14529 1486 aa12.45□□□□□ -0.42
SMARCC1-204ENST00000462198 TRIM41Q8WV44 630 aa12.41□□□□□ -0.42
SMARCC1-204ENST00000462198 POTEHQ6S545 545 aa12.38□□□□□ -0.43
SMARCC1-204ENST00000462198 SCRIBQ14160 1630 aa12.37□□□□□ -0.43
SMARCC1-204ENST00000462198 ERCC6Q03468 1493 aa12.3□□□□□ -0.44
SMARCC1-204ENST00000462198 DCAF1Q9Y4B6 1507 aa12.23□□□□□ -0.45
SMARCC1-204ENST00000462198 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.2□□□□□ -0.465e-10■■■□□ 16.7
SMARCC1-204ENST00000462198 ZCCHC6Q5VYS8 1495 aaKnown RBP12.18□□□□□ -0.46
SMARCC1-204ENST00000462198 NESP48681 1621 aa12.05□□□□□ -0.48
SMARCC1-204ENST00000462198 NCAPD3P42695 1498 aa12.04□□□□□ -0.48
SMARCC1-204ENST00000462198 DSG3P32926 999 aa12□□□□□ -0.49
SMARCC1-204ENST00000462198 NCBP3Q53F19 620 aaKnown RBP11.98□□□□□ -0.49
SMARCC1-204ENST00000462198 THOC2Q8NI27 1593 aaKnown RBP11.96□□□□□ -0.49
SMARCC1-204ENST00000462198 U3KPZ7 1027 aaPredicted RBP11.92□□□□□ -0.5
SMARCC1-204ENST00000462198 ATAD2BQ9ULI0 1458 aa11.91□□□□□ -0.5
SMARCC1-204ENST00000462198 OSCARQ8IYS5 282 aa11.9□□□□□ -0.5
SMARCC1-204ENST00000462198 SPINK5Q9NQ38 1064 aaPredicted RBP11.89□□□□□ -0.51
SMARCC1-204ENST00000462198 CAPN15O75808 1086 aa11.88□□□□□ -0.51
SMARCC1-204ENST00000462198 EHMT2Q96KQ7 1210 aa11.88□□□□□ -0.51
SMARCC1-204ENST00000462198 SMARCA2P51531 1590 aa11.88□□□□□ -0.51
SMARCC1-204ENST00000462198 KCNA4P22459 653 aa11.86□□□□□ -0.51
SMARCC1-204ENST00000462198 KIF21AQ7Z4S6 1674 aa11.84□□□□□ -0.51
SMARCC1-204ENST00000462198 HMGXB3Q12766 1538 aa11.83□□□□□ -0.52
SMARCC1-204ENST00000462198 LAMC3Q9Y6N6 1575 aa11.83□□□□□ -0.52
SMARCC1-204ENST00000462198 PDS5BQ9NTI5 1447 aa11.82□□□□□ -0.52
SMARCC1-204ENST00000462198 NPM3O75607 178 aaKnown RBP11.81□□□□□ -0.52
SMARCC1-204ENST00000462198 BAZ1AQ9NRL2 1556 aaPredicted RBP11.79□□□□□ -0.52
SMARCC1-204ENST00000462198 BAZ1BQ9UIG0 1483 aaKnown RBP11.76□□□□□ -0.53
SMARCC1-204ENST00000462198 TRHP20396 242 aaPredicted RBP11.74□□□□□ -0.53
SMARCC1-204ENST00000462198 SMARCA4P51532 1647 aa11.73□□□□□ -0.53
SMARCC1-204ENST00000462198 RIMBP3CA6NJZ7 1639 aa11.71□□□□□ -0.53
SMARCC1-204ENST00000462198 RIMBP3BA6NNM3 1639 aa11.71□□□□□ -0.53
SMARCC1-204ENST00000462198 RIMBP3Q9UFD9 1639 aa11.71□□□□□ -0.53
SMARCC1-204ENST00000462198 MRC2Q9UBG0 1479 aa11.71□□□□□ -0.53
SMARCC1-204ENST00000462198 CYB5RLQ6IPT4 315 aa11.68□□□□□ -0.54
SMARCC1-204ENST00000462198 WDR62O43379 1518 aa11.68□□□□□ -0.54
SMARCC1-204ENST00000462198 CADPSQ9ULU8 1353 aa11.67□□□□□ -0.54
SMARCC1-204ENST00000462198 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
SMARCC1-204ENST00000462198 PEG3Q9GZU2 1588 aa11.6□□□□□ -0.55
SMARCC1-204ENST00000462198 ZNF219Q9P2Y4 722 aaPredicted RBP11.56□□□□□ -0.56
SMARCC1-204ENST00000462198 CEP164Q9UPV0 1460 aa11.55□□□□□ -0.56
SMARCC1-204ENST00000462198 ABCB7O75027 752 aa11.54□□□□□ -0.56
SMARCC1-204ENST00000462198 APLP2Q06481 763 aa11.54□□□□□ -0.56
SMARCC1-204ENST00000462198 FANCD2Q9BXW9 1451 aa11.51□□□□□ -0.57
SMARCC1-204ENST00000462198 MROH2BQ7Z745 1585 aa11.49□□□□□ -0.57
SMARCC1-204ENST00000462198 CSRNP3Q8WYN3 585 aa11.48□□□□□ -0.57
SMARCC1-204ENST00000462198 RBM42Q9BTD8 480 aaKnown RBP11.48□□□□□ -0.57
SMARCC1-204ENST00000462198 ARAP1Q96P48 1450 aa11.45□□□□□ -0.58
SMARCC1-204ENST00000462198 CHRDL2Q6WN34 429 aa11.45□□□□□ -0.58
SMARCC1-204ENST00000462198 URB2Q14146 1524 aaKnown RBP11.45□□□□□ -0.58
SMARCC1-204ENST00000462198 SLC4A2P04920 1241 aa11.44□□□□□ -0.58
SMARCC1-204ENST00000462198 ZNF608Q9ULD9 1512 aaPredicted RBP11.41□□□□□ -0.58
SMARCC1-204ENST00000462198 ILDR1Q86SU0 546 aaPredicted RBP11.41□□□□□ -0.58
SMARCC1-204ENST00000462198 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.39□□□□□ -0.59
SMARCC1-204ENST00000462198 HNRNPUL2Q1KMD3 747 aaKnown RBP11.39□□□□□ -0.59
SMARCC1-204ENST00000462198 SLC4A1APQ9BWU0 796 aaKnown RBP11.39□□□□□ -0.59
SMARCC1-204ENST00000462198 CFTRP13569 1480 aa11.38□□□□□ -0.59
SMARCC1-204ENST00000462198 FBLN2P98095 1184 aa11.37□□□□□ -0.59
SMARCC1-204ENST00000462198 IFT140Q96RY7 1462 aa11.35□□□□□ -0.59
SMARCC1-204ENST00000462198 SP7Q8TDD2 431 aaPredicted RBP11.34□□□□□ -0.59
SMARCC1-204ENST00000462198 RSF1Q96T23 1441 aaPredicted RBP11.34□□□□□ -0.59
SMARCC1-204ENST00000462198 CHD1O14646 1710 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms