RNA–Protein interactions for RNA: ENST00000462112.1

SSR1-203, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 4 BASIC

Gene SSR1, Length 1,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-203ENST00000462112 NISCHQ9Y2I1 1504 aa19.46■□□□□ 0.71
SSR1-203ENST00000462112 AEBP2Q6ZN18 517 aaPredicted RBP18.53■□□□□ 0.56
SSR1-203ENST00000462112 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
SSR1-203ENST00000462112 CCDC180Q9P1Z9 1646 aa17.32■□□□□ 0.36
SSR1-203ENST00000462112 ABCC9O60706 1549 aa16.86■□□□□ 0.29
SSR1-203ENST00000462112 DCAF8L2P0C7V8 631 aa16.37■□□□□ 0.21
SSR1-203ENST00000462112 RB1CC1Q8TDY2 1594 aa16.32■□□□□ 0.2
SSR1-203ENST00000462112 NACADO15069 1562 aa16.3■□□□□ 0.2
SSR1-203ENST00000462112 PHF23Q9BUL5 403 aaPredicted RBP16.29■□□□□ 0.2
SSR1-203ENST00000462112 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
SSR1-203ENST00000462112 ZCCHC6Q5VYS8 1495 aaKnown RBP16.19■□□□□ 0.18
SSR1-203ENST00000462112 DCAF1Q9Y4B6 1507 aa16.14■□□□□ 0.17
SSR1-203ENST00000462112 SENP3Q9H4L4 574 aaPredicted RBP16.13■□□□□ 0.17
SSR1-203ENST00000462112 POTEDQ86YR6 584 aa15.84■□□□□ 0.13
SSR1-203ENST00000462112 UNC13AQ9UPW8 1703 aa15.79■□□□□ 0.12
SSR1-203ENST00000462112 PABPN1Q86U42 306 aaKnown RBP eCLIP15.76■□□□□ 0.11
SSR1-203ENST00000462112 SCRIBQ14160 1630 aa15.75■□□□□ 0.11
SSR1-203ENST00000462112 SHROOM4Q9ULL8 1493 aa15.69■□□□□ 0.1
SSR1-203ENST00000462112 BICRAQ9NZM4 1560 aa15.66■□□□□ 0.1
SSR1-203ENST00000462112 DNAJC5BQ9UF47 199 aa15.32■□□□□ 0.04
SSR1-203ENST00000462112 EIF4G1Q04637 1599 aaKnown RBP15.32■□□□□ 0.04
SSR1-203ENST00000462112 CC2D2AQ9P2K1 1620 aa15.24■□□□□ 0.03
SSR1-203ENST00000462112 CECR2Q9BXF3 1484 aa15.18■□□□□ 0.02
SSR1-203ENST00000462112 BAZ1AQ9NRL2 1556 aaPredicted RBP15.14■□□□□ 0.01
SSR1-203ENST00000462112 PLPPR3Q6T4P5 718 aa15.11■□□□□ 0.01
SSR1-203ENST00000462112 SMARCA4P51532 1647 aa15.08■□□□□ 0
SSR1-203ENST00000462112 SMARCA2P51531 1590 aa15.06■□□□□ 0
SSR1-203ENST00000462112 FOXD1Q16676 465 aa15.04■□□□□ -0
SSR1-203ENST00000462112 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
SSR1-203ENST00000462112 ATAD2BQ9ULI0 1458 aa14.99□□□□□ -0.01
SSR1-203ENST00000462112 MROH2BQ7Z745 1585 aa14.94□□□□□ -0.02
SSR1-203ENST00000462112 HMGXB3Q12766 1538 aa14.94□□□□□ -0.02
SSR1-203ENST00000462112 BAZ1BQ9UIG0 1483 aaKnown RBP14.93□□□□□ -0.02
SSR1-203ENST00000462112 PEG3Q9GZU2 1588 aa14.93□□□□□ -0.02
SSR1-203ENST00000462112 RSF1Q96T23 1441 aaPredicted RBP14.82□□□□□ -0.04
SSR1-203ENST00000462112 WIZO95785 1651 aa14.79□□□□□ -0.04
SSR1-203ENST00000462112 TOP2AP11388 1531 aaKnown RBP14.7□□□□□ -0.06
SSR1-203ENST00000462112 ERCC6Q03468 1493 aa14.63□□□□□ -0.07
SSR1-203ENST00000462112 LAMC3Q9Y6N6 1575 aa14.63□□□□□ -0.07
SSR1-203ENST00000462112 MSH5O43196 834 aa14.6□□□□□ -0.07
SSR1-203ENST00000462112 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
SSR1-203ENST00000462112 PDS5BQ9NTI5 1447 aa14.58□□□□□ -0.07
SSR1-203ENST00000462112 SUPT5HO00267 1087 aaKnown RBP14.58□□□□□ -0.08
SSR1-203ENST00000462112 NESP48681 1621 aa14.54□□□□□ -0.08
SSR1-203ENST00000462112 CCDC88BA6NC98 1476 aa14.5□□□□□ -0.09
SSR1-203ENST00000462112 CFTRP13569 1480 aa14.48□□□□□ -0.09
SSR1-203ENST00000462112 CUX2O14529 1486 aa14.43□□□□□ -0.1
SSR1-203ENST00000462112 CEP164Q9UPV0 1460 aa14.42□□□□□ -0.1
SSR1-203ENST00000462112 FANCD2Q9BXW9 1451 aa14.41□□□□□ -0.1
SSR1-203ENST00000462112 KIF21AQ7Z4S6 1674 aa14.39□□□□□ -0.11
SSR1-203ENST00000462112 PRDM2Q13029 1718 aa14.38□□□□□ -0.11
SSR1-203ENST00000462112 MRC2Q9UBG0 1479 aa14.37□□□□□ -0.11
SSR1-203ENST00000462112 THOC2Q8NI27 1593 aaKnown RBP14.32□□□□□ -0.12
SSR1-203ENST00000462112 ABCC8Q09428 1581 aa14.3□□□□□ -0.12
SSR1-203ENST00000462112 WDR62O43379 1518 aa14.27□□□□□ -0.12
SSR1-203ENST00000462112 ADRA2BP18089 450 aa14.24□□□□□ -0.13
SSR1-203ENST00000462112 PPP6R1Q9UPN7 881 aa14.24□□□□□ -0.13
SSR1-203ENST00000462112 URB2Q14146 1524 aaKnown RBP14.19□□□□□ -0.14
SSR1-203ENST00000462112 DNMBPQ6XZF7 1577 aa14.17□□□□□ -0.14
SSR1-203ENST00000462112 TOPBP1Q92547 1522 aa14.16□□□□□ -0.14
SSR1-203ENST00000462112 IFT140Q96RY7 1462 aa14.12□□□□□ -0.15
SSR1-203ENST00000462112 SOGA1O94964 1423 aa14.05□□□□□ -0.16
SSR1-203ENST00000462112 WRNQ14191 1432 aaPredicted RBP eCLIP14.05□□□□□ -0.16
SSR1-203ENST00000462112 POLA1P09884 1462 aaPredicted RBP14.03□□□□□ -0.16
SSR1-203ENST00000462112 CUX1P39880 1505 aa14.02□□□□□ -0.16
SSR1-203ENST00000462112 FGD5Q6ZNL6 1462 aa14.01□□□□□ -0.17
SSR1-203ENST00000462112 WDR97A6NE52 1622 aa13.97□□□□□ -0.17
SSR1-203ENST00000462112 TOP2BQ02880 1626 aa13.97□□□□□ -0.17
SSR1-203ENST00000462112 TARBP1Q13395 1621 aaKnown RBP13.96□□□□□ -0.17
SSR1-203ENST00000462112 BIVM-ERCC5R4GMW8 1640 aa13.95□□□□□ -0.18
SSR1-203ENST00000462112 RAD54L2Q9Y4B4 1467 aa13.94□□□□□ -0.18
SSR1-203ENST00000462112 ZNF608Q9ULD9 1512 aaPredicted RBP13.93□□□□□ -0.18
SSR1-203ENST00000462112 TDRD9Q8NDG6 1382 aaKnown RBP13.92□□□□□ -0.18
SSR1-203ENST00000462112 EIF4G3O43432 1585 aaKnown RBP13.92□□□□□ -0.18
SSR1-203ENST00000462112 DNAJC5Q9H3Z4 198 aa13.91□□□□□ -0.18
SSR1-203ENST00000462112 AQRO60306 1485 aaKnown RBP eCLIP13.91□□□□□ -0.187e-15■■■■□ 23.4
SSR1-203ENST00000462112 ABCA10Q8WWZ4 1543 aa13.9□□□□□ -0.18
SSR1-203ENST00000462112 OSCARQ8IYS5 282 aa13.9□□□□□ -0.18
SSR1-203ENST00000462112 SYNJ1O43426 1573 aa13.9□□□□□ -0.18
SSR1-203ENST00000462112 GRIN2BQ13224 1484 aa13.87□□□□□ -0.19
SSR1-203ENST00000462112 GAPVD1Q14C86 1478 aa13.87□□□□□ -0.19
SSR1-203ENST00000462112 FBLN2P98095 1184 aa13.86□□□□□ -0.19
SSR1-203ENST00000462112 PIAS4Q8N2W9 510 aaPredicted RBP13.85□□□□□ -0.19
SSR1-203ENST00000462112 CHMP7Q8WUX9 453 aaPredicted RBP13.84□□□□□ -0.19
SSR1-203ENST00000462112 MAGI1Q96QZ7 1491 aaPredicted RBP13.84□□□□□ -0.19
SSR1-203ENST00000462112 TRIM41Q8WV44 630 aa13.83□□□□□ -0.2
SSR1-203ENST00000462112 KIF27Q86VH2 1401 aa13.8□□□□□ -0.2
SSR1-203ENST00000462112 ABCA5Q8WWZ7 1642 aa13.79□□□□□ -0.2
SSR1-203ENST00000462112 SNAPC4Q5SXM2 1469 aa13.79□□□□□ -0.2
SSR1-203ENST00000462112 PBRM1Q86U86 1689 aa13.79□□□□□ -0.2
SSR1-203ENST00000462112 SYNJ2O15056 1496 aa13.77□□□□□ -0.21
SSR1-203ENST00000462112 ERICH3Q5RHP9 1530 aa13.77□□□□□ -0.21
SSR1-203ENST00000462112 CHD1O14646 1710 aa13.73□□□□□ -0.21
SSR1-203ENST00000462112 FHAD1B1AJZ9 1412 aa13.73□□□□□ -0.21
SSR1-203ENST00000462112 ADAMTS12P58397 1594 aa13.66□□□□□ -0.22
SSR1-203ENST00000462112 CUL7Q14999 1698 aa13.66□□□□□ -0.22
SSR1-203ENST00000462112 GRIN2AQ12879 1464 aa13.66□□□□□ -0.22
SSR1-203ENST00000462112 IGF1RP08069 1367 aa13.65□□□□□ -0.22
SSR1-203ENST00000462112 CARMIL1Q5VZK9 1371 aa13.62□□□□□ -0.23
SSR1-203ENST00000462112 KCNA4P22459 653 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms