RNA–Protein interactions for RNA: ENST00000461967.1

RPL3-209, Transcript of ribosomal protein L3, humanhuman

TSL 2

Gene RPL3, Length 767 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL3-209ENST00000461967 NISCHQ9Y2I1 1504 aa32.8■■■□□ 2.84
RPL3-209ENST00000461967 CCDC180Q9P1Z9 1646 aa29.56■■■□□ 2.32
RPL3-209ENST00000461967 ABCC9O60706 1549 aa29.47■■■□□ 2.31
RPL3-209ENST00000461967 RB1CC1Q8TDY2 1594 aa28.11■■■□□ 2.09
RPL3-209ENST00000461967 NACADO15069 1562 aa27.88■■■□□ 2.05
RPL3-209ENST00000461967 DCAF8L2P0C7V8 631 aa27.66■■■□□ 2.02
RPL3-209ENST00000461967 UNC13AQ9UPW8 1703 aa27.47■■□□□ 1.99
RPL3-209ENST00000461967 MYO15BQ96JP2 1530 aa27.46■■□□□ 1.99
RPL3-209ENST00000461967 DNAJC5BQ9UF47 199 aa27.45■■□□□ 1.98
RPL3-209ENST00000461967 PABPN1Q86U42 306 aaKnown RBP eCLIP27.35■■□□□ 1.97
RPL3-209ENST00000461967 ZCCHC6Q5VYS8 1495 aaKnown RBP27.21■■□□□ 1.95
RPL3-209ENST00000461967 BICRAQ9NZM4 1560 aa27.2■■□□□ 1.94
RPL3-209ENST00000461967 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
RPL3-209ENST00000461967 SHROOM4Q9ULL8 1493 aa26.93■■□□□ 1.9
RPL3-209ENST00000461967 SCRIBQ14160 1630 aa26.92■■□□□ 1.9
RPL3-209ENST00000461967 CC2D2AQ9P2K1 1620 aa26.64■■□□□ 1.85
RPL3-209ENST00000461967 EIF4G1Q04637 1599 aaKnown RBP26.59■■□□□ 1.85
RPL3-209ENST00000461967 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
RPL3-209ENST00000461967 NCAPD3P42695 1498 aa25.66■■□□□ 1.7
RPL3-209ENST00000461967 SMARCA4P51532 1647 aa25.65■■□□□ 1.7
RPL3-209ENST00000461967 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
RPL3-209ENST00000461967 ATAD2BQ9ULI0 1458 aa25.6■■□□□ 1.69
RPL3-209ENST00000461967 HMGXB3Q12766 1538 aa25.57■■□□□ 1.68
RPL3-209ENST00000461967 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
RPL3-209ENST00000461967 ERCC6Q03468 1493 aa25.52■■□□□ 1.68
RPL3-209ENST00000461967 CUX2O14529 1486 aa25.44■■□□□ 1.66
RPL3-209ENST00000461967 BAZ1BQ9UIG0 1483 aaKnown RBP25.43■■□□□ 1.66
RPL3-209ENST00000461967 PEG3Q9GZU2 1588 aa25.36■■□□□ 1.65
RPL3-209ENST00000461967 NESP48681 1621 aa25.28■■□□□ 1.64
RPL3-209ENST00000461967 DNAJC5Q9H3Z4 198 aa25.28■■□□□ 1.64
RPL3-209ENST00000461967 MROH2BQ7Z745 1585 aa25.26■■□□□ 1.63
RPL3-209ENST00000461967 LAMC3Q9Y6N6 1575 aa25.18■■□□□ 1.62
RPL3-209ENST00000461967 THOC2Q8NI27 1593 aaKnown RBP25.11■■□□□ 1.61
RPL3-209ENST00000461967 KIF21AQ7Z4S6 1674 aa25.06■■□□□ 1.6
RPL3-209ENST00000461967 WIZO95785 1651 aa25.01■■□□□ 1.59
RPL3-209ENST00000461967 PDS5BQ9NTI5 1447 aa25■■□□□ 1.59
RPL3-209ENST00000461967 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
RPL3-209ENST00000461967 MRC2Q9UBG0 1479 aa24.82■■□□□ 1.56
RPL3-209ENST00000461967 WDR62O43379 1518 aa24.75■■□□□ 1.55
RPL3-209ENST00000461967 CEP164Q9UPV0 1460 aa24.73■■□□□ 1.55
RPL3-209ENST00000461967 TOP2AP11388 1531 aaKnown RBP24.71■■□□□ 1.55
RPL3-209ENST00000461967 RSF1Q96T23 1441 aaPredicted RBP24.7■■□□□ 1.55
RPL3-209ENST00000461967 FANCD2Q9BXW9 1451 aa24.66■■□□□ 1.54
RPL3-209ENST00000461967 CFTRP13569 1480 aa24.61■■□□□ 1.53
RPL3-209ENST00000461967 PRDM2Q13029 1718 aa24.54■■□□□ 1.52
RPL3-209ENST00000461967 URB2Q14146 1524 aaKnown RBP24.43■■□□□ 1.5
RPL3-209ENST00000461967 CCDC88BA6NC98 1476 aa24.35■■□□□ 1.49
RPL3-209ENST00000461967 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
RPL3-209ENST00000461967 IFT140Q96RY7 1462 aa24.2■■□□□ 1.47
RPL3-209ENST00000461967 TOPBP1Q92547 1522 aa24.18■■□□□ 1.46
RPL3-209ENST00000461967 OSCARQ8IYS5 282 aa24.17■■□□□ 1.46
RPL3-209ENST00000461967 ABCC8Q09428 1581 aa24.16■■□□□ 1.46
RPL3-209ENST00000461967 DNMBPQ6XZF7 1577 aa24.15■■□□□ 1.46
RPL3-209ENST00000461967 ZNF608Q9ULD9 1512 aaPredicted RBP24.12■■□□□ 1.45
RPL3-209ENST00000461967 EIF4G3O43432 1585 aaKnown RBP24.1■■□□□ 1.45
RPL3-209ENST00000461967 TARBP1Q13395 1621 aaKnown RBP23.98■■□□□ 1.43
RPL3-209ENST00000461967 RIMBP3CA6NJZ7 1639 aa23.97■■□□□ 1.43
RPL3-209ENST00000461967 RIMBP3BA6NNM3 1639 aa23.97■■□□□ 1.43
RPL3-209ENST00000461967 RIMBP3Q9UFD9 1639 aa23.97■■□□□ 1.43
RPL3-209ENST00000461967 POLA1P09884 1462 aaPredicted RBP23.93■■□□□ 1.42
RPL3-209ENST00000461967 CHD1O14646 1710 aa23.93■■□□□ 1.42
RPL3-209ENST00000461967 AQRO60306 1485 aaKnown RBP eCLIP23.87■■□□□ 1.413e-8■■■■□ 26.7
RPL3-209ENST00000461967 ARHGEF11O15085 1522 aa23.87■■□□□ 1.41
RPL3-209ENST00000461967 WDR97A6NE52 1622 aa23.81■■□□□ 1.4
RPL3-209ENST00000461967 RAD54L2Q9Y4B4 1467 aa23.81■■□□□ 1.4
RPL3-209ENST00000461967 FGD5Q6ZNL6 1462 aa23.8■■□□□ 1.4
RPL3-209ENST00000461967 SOGA1O94964 1423 aa23.79■■□□□ 1.4
RPL3-209ENST00000461967 FBLN2P98095 1184 aa23.76■■□□□ 1.39
RPL3-209ENST00000461967 CUX1P39880 1505 aa23.75■■□□□ 1.39
RPL3-209ENST00000461967 TDRD9Q8NDG6 1382 aaKnown RBP23.73■■□□□ 1.39
RPL3-209ENST00000461967 SNAPC4Q5SXM2 1469 aa23.72■■□□□ 1.39
RPL3-209ENST00000461967 MAGI1Q96QZ7 1491 aaPredicted RBP23.66■■□□□ 1.38
RPL3-209ENST00000461967 PBRM1Q86U86 1689 aa23.64■■□□□ 1.38
RPL3-209ENST00000461967 GRIN2BQ13224 1484 aa23.63■■□□□ 1.37
RPL3-209ENST00000461967 SYNJ1O43426 1573 aa23.63■■□□□ 1.37
RPL3-209ENST00000461967 ARAP1Q96P48 1450 aa23.62■■□□□ 1.37
RPL3-209ENST00000461967 SUPT5HO00267 1087 aaKnown RBP23.61■■□□□ 1.37
RPL3-209ENST00000461967 CYB5RLQ6IPT4 315 aa23.61■■□□□ 1.37
RPL3-209ENST00000461967 CLASP1Q7Z460 1538 aa23.59■■□□□ 1.37
RPL3-209ENST00000461967 SYNJ2O15056 1496 aa23.57■■□□□ 1.36
RPL3-209ENST00000461967 CHMP7Q8WUX9 453 aaPredicted RBP23.57■■□□□ 1.36
RPL3-209ENST00000461967 GAPVD1Q14C86 1478 aa23.54■■□□□ 1.36
RPL3-209ENST00000461967 ABCA5Q8WWZ7 1642 aa23.53■■□□□ 1.36
RPL3-209ENST00000461967 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
RPL3-209ENST00000461967 BIVM-ERCC5R4GMW8 1640 aa23.44■■□□□ 1.34
RPL3-209ENST00000461967 WRNQ14191 1432 aaPredicted RBP eCLIP23.43■■□□□ 1.345e-6■□□□□ 8.4
RPL3-209ENST00000461967 TOP2BQ02880 1626 aa23.42■■□□□ 1.34
RPL3-209ENST00000461967 TRHP20396 242 aaPredicted RBP23.42■■□□□ 1.34
RPL3-209ENST00000461967 ADAMTS12P58397 1594 aa23.38■■□□□ 1.33
RPL3-209ENST00000461967 GRIN2AQ12879 1464 aa23.34■■□□□ 1.33
RPL3-209ENST00000461967 CEP170Q5SW79 1584 aa23.26■■□□□ 1.31
RPL3-209ENST00000461967 ERICH3Q5RHP9 1530 aa23.25■■□□□ 1.31
RPL3-209ENST00000461967 FHAD1B1AJZ9 1412 aa23.24■■□□□ 1.31
RPL3-209ENST00000461967 NUP160Q12769 1436 aa23.22■■□□□ 1.31
RPL3-209ENST00000461967 ERCC6L2Q5T890 1561 aa23.18■■□□□ 1.3
RPL3-209ENST00000461967 SHROOM2Q13796 1616 aa23.17■■□□□ 1.3
RPL3-209ENST00000461967 RUSC2Q8N2Y8 1516 aa23.06■■□□□ 1.28
RPL3-209ENST00000461967 PRG4Q92954 1404 aaPredicted RBP23■■□□□ 1.27
RPL3-209ENST00000461967 CUL7Q14999 1698 aa22.99■■□□□ 1.27
RPL3-209ENST00000461967 KIF27Q86VH2 1401 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms