RNA–Protein interactions for RNA: ENST00000461383.1

VCL-203, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 268 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-203ENST00000461383 VPS13CQ709C8 3753 aa-1.64□□□□□ -2.67
VCL-203ENST00000461383 FREM2Q5SZK8 3169 aa-1.64□□□□□ -2.67
VCL-203ENST00000461383 MYO15AQ9UKN7 3530 aa-1.67□□□□□ -2.68
VCL-203ENST00000461383 MT1BP07438 61 aa-1.67□□□□□ -2.68
VCL-203ENST00000461383 RPS29P62273 56 aaKnown RBP-1.72□□□□□ -2.68
VCL-203ENST00000461383 FRYLO94915 3013 aa-1.74□□□□□ -2.69
VCL-203ENST00000461383 CEP250Q9BV73 2442 aa-1.75□□□□□ -2.69
VCL-203ENST00000461383 ABCA13Q86UQ4 5058 aa-1.76□□□□□ -2.69
VCL-203ENST00000461383 SNRPGP15A8MWD9 76 aa-1.77□□□□□ -2.69
VCL-203ENST00000461383 TOMM7Q9P0U1 55 aa-1.8□□□□□ -2.7
VCL-203ENST00000461383 BOD1L1Q8NFC6 3051 aa-1.82□□□□□ -2.7
VCL-203ENST00000461383 PCNTO95613 3336 aa-1.83□□□□□ -2.7
VCL-203ENST00000461383 DMDP11532 3685 aa-1.85□□□□□ -2.71
VCL-203ENST00000461383 CEP350Q5VT06 3117 aa-1.86□□□□□ -2.71
VCL-203ENST00000461383 WDFY3Q8IZQ1 3526 aa-1.87□□□□□ -2.71
VCL-203ENST00000461383 LINC01590Q5TEZ4 76 aa-1.89□□□□□ -2.71
VCL-203ENST00000461383 IQGAP2Q13576 1575 aa-1.93□□□□□ -2.72
VCL-203ENST00000461383 RHPN1-AS1Q9BWJ2 59 aa-1.94□□□□□ -2.72
VCL-203ENST00000461383 SPEGQ15772 3267 aa-1.95□□□□□ -2.72
VCL-203ENST00000461383 MT1FP04733 61 aa-1.97□□□□□ -2.72
VCL-203ENST00000461383 SAMD9LQ8IVG5 1584 aa-1.98□□□□□ -2.73
VCL-203ENST00000461383 SZT2Q5T011 3432 aa-1.99□□□□□ -2.73
VCL-203ENST00000461383 TOMM5Q8N4H5 51 aa-1.99□□□□□ -2.73
VCL-203ENST00000461383 WDFY4Q6ZS81 3184 aa-2□□□□□ -2.73
VCL-203ENST00000461383 RPL39P62891 51 aaKnown RBP-2.01□□□□□ -2.73
VCL-203ENST00000461383 KRTAP20-1Q3LI63 56 aa-2.01□□□□□ -2.73
VCL-203ENST00000461383 DUOX1Q9NRD9 1551 aa-2.02□□□□□ -2.73
VCL-203ENST00000461383 DEFB133Q30KQ1 61 aa-2.05□□□□□ -2.74
VCL-203ENST00000461383 MUC3AQ02505 3323 aa-2.07□□□□□ -2.74
VCL-203ENST00000461383 ATP7AQ04656 1500 aa-2.08□□□□□ -2.74
VCL-203ENST00000461383 XIRP2A4UGR9 3374 aa-2.09□□□□□ -2.74
VCL-203ENST00000461383 A0A096LNI7 61 aa-2.09□□□□□ -2.74
VCL-203ENST00000461383 CENPEQ02224 2701 aa-2.09□□□□□ -2.74
VCL-203ENST00000461383 TTTY10Q9BZA0 68 aa-2.1□□□□□ -2.75
VCL-203ENST00000461383 HTN1P15515 57 aa-2.11□□□□□ -2.75
VCL-203ENST00000461383 DNAH12Q6ZR08 3092 aa-2.11□□□□□ -2.75
VCL-203ENST00000461383 RPL39LQ96EH5 51 aaKnown RBP-2.12□□□□□ -2.75
VCL-203ENST00000461383 MROH2BQ7Z745 1585 aa-2.16□□□□□ -2.76
VCL-203ENST00000461383 MKI67P46013 3256 aaKnown RBP-2.17□□□□□ -2.76
VCL-203ENST00000461383 TOP2AP11388 1531 aaKnown RBP-2.17□□□□□ -2.76
VCL-203ENST00000461383 DCHS1Q96JQ0 3298 aa-2.18□□□□□ -2.76
VCL-203ENST00000461383 EP400Q96L91 3159 aa-2.2□□□□□ -2.76
VCL-203ENST00000461383 CD52P31358 61 aa-2.2□□□□□ -2.76
VCL-203ENST00000461383 USP34Q70CQ2 3546 aa-2.23□□□□□ -2.77
VCL-203ENST00000461383 DEFB124Q8NES8 71 aa-2.27□□□□□ -2.77
VCL-203ENST00000461383 UNC80Q8N2C7 3258 aa-2.29□□□□□ -2.78
VCL-203ENST00000461383 DEFB104AQ8WTQ1 72 aa-2.3□□□□□ -2.78
VCL-203ENST00000461383 LOC400499M0QZD8 3231 aa-2.34□□□□□ -2.78
VCL-203ENST00000461383 DNAH14Q0VDD8 3507 aa-2.35□□□□□ -2.79
VCL-203ENST00000461383 KRTAP19-6Q3LI70 58 aa-2.37□□□□□ -2.79
VCL-203ENST00000461383 CFAP47Q6ZTR5 3102 aa-2.39□□□□□ -2.79
VCL-203ENST00000461383 ASPMQ8IZT6 3477 aa-2.4□□□□□ -2.79
VCL-203ENST00000461383 H3BUX3 64 aa-2.45□□□□□ -2.8
VCL-203ENST00000461383 BRCA2P51587 3418 aa-2.55□□□□□ -2.82
VCL-203ENST00000461383 GCC2Q8IWJ2 1684 aa-2.56□□□□□ -2.82
VCL-203ENST00000461383 K7EIM0 57 aa-2.56□□□□□ -2.82
VCL-203ENST00000461383 LINC01556Q5JQF7 62 aa-2.58□□□□□ -2.82
VCL-203ENST00000461383 VCANP13611 3396 aa-2.62□□□□□ -2.83
VCL-203ENST00000461383 SNRPGP62308 76 aaKnown RBP-2.63□□□□□ -2.83
VCL-203ENST00000461383 KRTAP19-2Q3LHN2 52 aa-2.63□□□□□ -2.83
VCL-203ENST00000461383 ARHGAP5-AS1Q96IT6 56 aa-2.63□□□□□ -2.83
VCL-203ENST00000461383 PRCDQ00LT1 54 aa-2.7□□□□□ -2.84
VCL-203ENST00000461383 CENPFP49454 3210 aa-2.72□□□□□ -2.84
VCL-203ENST00000461383 CDH23Q9H251 3354 aa-2.77□□□□□ -2.85
VCL-203ENST00000461383 APELAP0DMC3 54 aa-2.85□□□□□ -2.87
VCL-203ENST00000461383 TMEM167AQ8TBQ9 72 aa-2.86□□□□□ -2.87
VCL-203ENST00000461383 A0A096LPF7 62 aa-2.87□□□□□ -2.87
VCL-203ENST00000461383 VPS13AQ96RL7 3174 aa-2.88□□□□□ -2.87
VCL-203ENST00000461383 H3BSH0 61 aa-3.02□□□□□ -2.89
VCL-203ENST00000461383 RPL39P5Q59GN2 51 aa-3.04□□□□□ -2.9
VCL-203ENST00000461383 DEFB108AA8MXU0 73 aa-3.12□□□□□ -2.91
VCL-203ENST00000461383 HTN3P15516 51 aa-3.13□□□□□ -2.91
VCL-203ENST00000461383 UTRNP46939 3433 aa-3.13□□□□□ -2.91
VCL-203ENST00000461383 Q9Y3F1 56 aa-3.2□□□□□ -2.92
VCL-203ENST00000461383 GOLGB1Q14789 3259 aaKnown RBP-3.37□□□□□ -2.95
VCL-203ENST00000461383 COX14Q96I36 57 aa-3.54□□□□□ -2.98
VCL-203ENST00000461383 DEFB108BQ8NET1 73 aa-3.6□□□□□ -2.99
VCL-203ENST00000461383 STATHP02808 62 aa-4.13□□□□□ -3.07
Retrieved 78 of 20,778 RNA–protein pairs in 14.7 ms