RNA–Protein interactions for RNA: ENST00000461328.1

VARS-219, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 662 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-219ENST00000461328 NISCHQ9Y2I1 1504 aa37.76■■■■□ 3.63
VARS-219ENST00000461328 CCDC180Q9P1Z9 1646 aa33.71■■■□□ 2.99
VARS-219ENST00000461328 ABCC9O60706 1549 aa33.36■■■□□ 2.93
VARS-219ENST00000461328 RB1CC1Q8TDY2 1594 aa31.92■■■□□ 2.7
VARS-219ENST00000461328 NACADO15069 1562 aa31.79■■■□□ 2.68
VARS-219ENST00000461328 DCAF8L2P0C7V8 631 aa31.76■■■□□ 2.67
VARS-219ENST00000461328 MYO15BQ96JP2 1530 aa31.46■■■□□ 2.63
VARS-219ENST00000461328 ZCCHC6Q5VYS8 1495 aaKnown RBP31.38■■■□□ 2.61
VARS-219ENST00000461328 DCAF1Q9Y4B6 1507 aa31.2■■■□□ 2.59
VARS-219ENST00000461328 UNC13AQ9UPW8 1703 aa31.15■■■□□ 2.58
VARS-219ENST00000461328 PABPN1Q86U42 306 aaKnown RBP eCLIP31.12■■■□□ 2.57
VARS-219ENST00000461328 BICRAQ9NZM4 1560 aa30.94■■■□□ 2.54
VARS-219ENST00000461328 DNAJC5BQ9UF47 199 aa30.89■■■□□ 2.54
VARS-219ENST00000461328 SCRIBQ14160 1630 aa30.77■■■□□ 2.52
VARS-219ENST00000461328 SHROOM4Q9ULL8 1493 aa30.59■■■□□ 2.49
VARS-219ENST00000461328 EIF4G1Q04637 1599 aaKnown RBP30.17■■■□□ 2.42
VARS-219ENST00000461328 CC2D2AQ9P2K1 1620 aa30.14■■■□□ 2.41
VARS-219ENST00000461328 CECR2Q9BXF3 1484 aa30■■■□□ 2.39
VARS-219ENST00000461328 SMARCA4P51532 1647 aa29.38■■■□□ 2.29
VARS-219ENST00000461328 NCAPD3P42695 1498 aa29.33■■■□□ 2.29
VARS-219ENST00000461328 BAZ1AQ9NRL2 1556 aaPredicted RBP29.3■■■□□ 2.28
VARS-219ENST00000461328 ATAD2BQ9ULI0 1458 aa29.3■■■□□ 2.28
VARS-219ENST00000461328 SMARCA2P51531 1590 aa29.26■■■□□ 2.28
VARS-219ENST00000461328 HMGXB3Q12766 1538 aa29.15■■■□□ 2.26
VARS-219ENST00000461328 MROH2BQ7Z745 1585 aa29.1■■■□□ 2.25
VARS-219ENST00000461328 BAZ1BQ9UIG0 1483 aaKnown RBP29.07■■■□□ 2.24
VARS-219ENST00000461328 PEG3Q9GZU2 1588 aa29.06■■■□□ 2.24
VARS-219ENST00000461328 ERCC6Q03468 1493 aa28.8■■■□□ 2.2
VARS-219ENST00000461328 WIZO95785 1651 aa28.77■■■□□ 2.2
VARS-219ENST00000461328 NESP48681 1621 aa28.75■■■□□ 2.19
VARS-219ENST00000461328 RSF1Q96T23 1441 aaPredicted RBP28.65■■■□□ 2.18
VARS-219ENST00000461328 LAMC3Q9Y6N6 1575 aa28.62■■■□□ 2.17
VARS-219ENST00000461328 CUX2O14529 1486 aa28.58■■■□□ 2.17
VARS-219ENST00000461328 CADPSQ9ULU8 1353 aa28.47■■■□□ 2.15
VARS-219ENST00000461328 PDS5BQ9NTI5 1447 aa28.46■■■□□ 2.15
VARS-219ENST00000461328 TOP2AP11388 1531 aaKnown RBP28.45■■■□□ 2.15
VARS-219ENST00000461328 KIF21AQ7Z4S6 1674 aa28.38■■■□□ 2.13
VARS-219ENST00000461328 THOC2Q8NI27 1593 aaKnown RBP28.37■■■□□ 2.13
VARS-219ENST00000461328 CFTRP13569 1480 aa28.22■■■□□ 2.11
VARS-219ENST00000461328 MRC2Q9UBG0 1479 aa28.19■■■□□ 2.1
VARS-219ENST00000461328 FANCD2Q9BXW9 1451 aa28.16■■■□□ 2.1
VARS-219ENST00000461328 CEP164Q9UPV0 1460 aa28.16■■■□□ 2.1
VARS-219ENST00000461328 CCDC88BA6NC98 1476 aa28.11■■■□□ 2.09
VARS-219ENST00000461328 WDR62O43379 1518 aa28.09■■■□□ 2.09
VARS-219ENST00000461328 DNAJC5Q9H3Z4 198 aa28.09■■■□□ 2.09
VARS-219ENST00000461328 PRDM2Q13029 1718 aa27.96■■■□□ 2.07
VARS-219ENST00000461328 URB2Q14146 1524 aaKnown RBP27.88■■■□□ 2.05
VARS-219ENST00000461328 SUPT5HO00267 1087 aaKnown RBP27.73■■■□□ 2.03
VARS-219ENST00000461328 TOPBP1Q92547 1522 aa27.66■■■□□ 2.02
VARS-219ENST00000461328 ABCC8Q09428 1581 aa27.65■■■□□ 2.02
VARS-219ENST00000461328 DNMBPQ6XZF7 1577 aa27.6■■■□□ 2.01
VARS-219ENST00000461328 IFT140Q96RY7 1462 aa27.58■■■□□ 2.01
VARS-219ENST00000461328 ZNF608Q9ULD9 1512 aaPredicted RBP27.48■■□□□ 1.99
VARS-219ENST00000461328 POLA1P09884 1462 aaPredicted RBP27.4■■□□□ 1.98
VARS-219ENST00000461328 TARBP1Q13395 1621 aaKnown RBP27.37■■□□□ 1.97
VARS-219ENST00000461328 EIF4G3O43432 1585 aaKnown RBP27.36■■□□□ 1.97
VARS-219ENST00000461328 OSCARQ8IYS5 282 aa27.35■■□□□ 1.97
VARS-219ENST00000461328 CUX1P39880 1505 aa27.33■■□□□ 1.97
VARS-219ENST00000461328 SOGA1O94964 1423 aa27.3■■□□□ 1.96
VARS-219ENST00000461328 FGD5Q6ZNL6 1462 aa27.3■■□□□ 1.96
VARS-219ENST00000461328 RAD54L2Q9Y4B4 1467 aa27.3■■□□□ 1.96
VARS-219ENST00000461328 AQRO60306 1485 aaKnown RBP eCLIP27.28■■□□□ 1.964e-9■■■■□ 20.1
VARS-219ENST00000461328 TDRD9Q8NDG6 1382 aaKnown RBP27.19■■□□□ 1.94
VARS-219ENST00000461328 WDR97A6NE52 1622 aa27.14■■□□□ 1.94
VARS-219ENST00000461328 TRIM41Q8WV44 630 aa27.08■■□□□ 1.93
VARS-219ENST00000461328 FBLN2P98095 1184 aa27.07■■□□□ 1.92
VARS-219ENST00000461328 CHD1O14646 1710 aa27.07■■□□□ 1.92
VARS-219ENST00000461328 WRNQ14191 1432 aaPredicted RBP eCLIP27.04■■□□□ 1.92
VARS-219ENST00000461328 SNAPC4Q5SXM2 1469 aa27.04■■□□□ 1.92
VARS-219ENST00000461328 GRIN2BQ13224 1484 aa27.02■■□□□ 1.92
VARS-219ENST00000461328 ABCA10Q8WWZ4 1543 aa27■■□□□ 1.91
VARS-219ENST00000461328 TOP2BQ02880 1626 aa26.99■■□□□ 1.91
VARS-219ENST00000461328 BIVM-ERCC5R4GMW8 1640 aa26.99■■□□□ 1.91
VARS-219ENST00000461328 GAPVD1Q14C86 1478 aa26.98■■□□□ 1.91
VARS-219ENST00000461328 MAGI1Q96QZ7 1491 aaPredicted RBP26.98■■□□□ 1.91
VARS-219ENST00000461328 SYNJ1O43426 1573 aa26.97■■□□□ 1.91
VARS-219ENST00000461328 RIMBP3CA6NJZ7 1639 aa26.94■■□□□ 1.9
VARS-219ENST00000461328 RIMBP3BA6NNM3 1639 aa26.94■■□□□ 1.9
VARS-219ENST00000461328 RIMBP3Q9UFD9 1639 aa26.94■■□□□ 1.9
VARS-219ENST00000461328 PBRM1Q86U86 1689 aa26.92■■□□□ 1.9
VARS-219ENST00000461328 ABCA5Q8WWZ7 1642 aa26.92■■□□□ 1.9
VARS-219ENST00000461328 CHMP7Q8WUX9 453 aaPredicted RBP26.92■■□□□ 1.9
VARS-219ENST00000461328 ARHGEF11O15085 1522 aa26.9■■□□□ 1.9
VARS-219ENST00000461328 SYNJ2O15056 1496 aa26.87■■□□□ 1.89
VARS-219ENST00000461328 CLASP1Q7Z460 1538 aa26.77■■□□□ 1.88
VARS-219ENST00000461328 ADAMTS12P58397 1594 aa26.71■■□□□ 1.87
VARS-219ENST00000461328 CYB5RLQ6IPT4 315 aa26.69■■□□□ 1.86
VARS-219ENST00000461328 ERICH3Q5RHP9 1530 aa26.67■■□□□ 1.86
VARS-219ENST00000461328 GRIN2AQ12879 1464 aa26.67■■□□□ 1.86
VARS-219ENST00000461328 ARAP1Q96P48 1450 aa26.66■■□□□ 1.86
VARS-219ENST00000461328 FHAD1B1AJZ9 1412 aa26.65■■□□□ 1.86
VARS-219ENST00000461328 NUP160Q12769 1436 aa26.55■■□□□ 1.84
VARS-219ENST00000461328 CEP170Q5SW79 1584 aa26.54■■□□□ 1.84
VARS-219ENST00000461328 KIF27Q86VH2 1401 aa26.51■■□□□ 1.83
VARS-219ENST00000461328 IGF1RP08069 1367 aa26.41■■□□□ 1.82
VARS-219ENST00000461328 CUL7Q14999 1698 aa26.38■■□□□ 1.81
VARS-219ENST00000461328 ERCC6L2Q5T890 1561 aa26.37■■□□□ 1.81
VARS-219ENST00000461328 SHROOM2Q13796 1616 aa26.37■■□□□ 1.81
VARS-219ENST00000461328 RUSC2Q8N2Y8 1516 aa26.32■■□□□ 1.8
VARS-219ENST00000461328 TRHP20396 242 aaPredicted RBP26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms