RNA–Protein interactions for RNA: ENST00000461171.1

CD40-203, Transcript of CD40 molecule, humanhuman

TSL 3

Gene CD40, Length 710 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-203ENST00000461171 NISCHQ9Y2I1 1504 aa24.17■■□□□ 1.46
CD40-203ENST00000461171 CCDC180Q9P1Z9 1646 aa21.64■■□□□ 1.05
CD40-203ENST00000461171 ABCC9O60706 1549 aa21.4■■□□□ 1.02
CD40-203ENST00000461171 AEBP2Q6ZN18 517 aaPredicted RBP21.12■□□□□ 0.97
CD40-203ENST00000461171 RB1CC1Q8TDY2 1594 aa20.47■□□□□ 0.87
CD40-203ENST00000461171 NACADO15069 1562 aa20.4■□□□□ 0.86
CD40-203ENST00000461171 MYO15BQ96JP2 1530 aa20.22■□□□□ 0.83
CD40-203ENST00000461171 DCAF8L2P0C7V8 631 aa20.15■□□□□ 0.82
CD40-203ENST00000461171 ZCCHC6Q5VYS8 1495 aaKnown RBP20.1■□□□□ 0.81
CD40-203ENST00000461171 UNC13AQ9UPW8 1703 aa20.02■□□□□ 0.8
CD40-203ENST00000461171 DCAF1Q9Y4B6 1507 aa20.02■□□□□ 0.79
CD40-203ENST00000461171 DNAJC5BQ9UF47 199 aa19.92■□□□□ 0.78
CD40-203ENST00000461171 BICRAQ9NZM4 1560 aa19.91■□□□□ 0.78
CD40-203ENST00000461171 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
CD40-203ENST00000461171 CHIC1Q5VXU3 224 aa19.84■□□□□ 0.77
CD40-203ENST00000461171 SHROOM4Q9ULL8 1493 aa19.7■□□□□ 0.74
CD40-203ENST00000461171 SCRIBQ14160 1630 aa19.67■□□□□ 0.74
CD40-203ENST00000461171 EIF4G1Q04637 1599 aaKnown RBP19.39■□□□□ 0.69
CD40-203ENST00000461171 CC2D2AQ9P2K1 1620 aa19.36■□□□□ 0.69
CD40-203ENST00000461171 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
CD40-203ENST00000461171 NCAPD3P42695 1498 aa18.84■□□□□ 0.61
CD40-203ENST00000461171 SMARCA4P51532 1647 aa18.82■□□□□ 0.6
CD40-203ENST00000461171 ATAD2BQ9ULI0 1458 aa18.79■□□□□ 0.6
CD40-203ENST00000461171 BAZ1AQ9NRL2 1556 aaPredicted RBP18.75■□□□□ 0.59
CD40-203ENST00000461171 SMARCA2P51531 1590 aa18.74■□□□□ 0.59
CD40-203ENST00000461171 HMGXB3Q12766 1538 aa18.74■□□□□ 0.59
CD40-203ENST00000461171 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
CD40-203ENST00000461171 MROH2BQ7Z745 1585 aa18.62■□□□□ 0.57
CD40-203ENST00000461171 BAZ1BQ9UIG0 1483 aaKnown RBP18.6■□□□□ 0.57
CD40-203ENST00000461171 ERCC6Q03468 1493 aa18.45■□□□□ 0.54
CD40-203ENST00000461171 NESP48681 1621 aa18.45■□□□□ 0.54
CD40-203ENST00000461171 CUX2O14529 1486 aa18.42■□□□□ 0.54
CD40-203ENST00000461171 WIZO95785 1651 aa18.38■□□□□ 0.53
CD40-203ENST00000461171 LAMC3Q9Y6N6 1575 aa18.37■□□□□ 0.53
CD40-203ENST00000461171 RSF1Q96T23 1441 aaPredicted RBP18.3■□□□□ 0.52
CD40-203ENST00000461171 THOC2Q8NI27 1593 aaKnown RBP18.28■□□□□ 0.52
CD40-203ENST00000461171 SENP3Q9H4L4 574 aaPredicted RBP18.24■□□□□ 0.51
CD40-203ENST00000461171 CADPSQ9ULU8 1353 aa18.24■□□□□ 0.51
CD40-203ENST00000461171 KIF21AQ7Z4S6 1674 aa18.22■□□□□ 0.51
CD40-203ENST00000461171 PDS5BQ9NTI5 1447 aa18.22■□□□□ 0.51
CD40-203ENST00000461171 TOP2AP11388 1531 aaKnown RBP18.19■□□□□ 0.5
CD40-203ENST00000461171 DNAJC5Q9H3Z4 198 aa18.16■□□□□ 0.5
CD40-203ENST00000461171 CFTRP13569 1480 aa18.1■□□□□ 0.49
CD40-203ENST00000461171 MRC2Q9UBG0 1479 aa18.09■□□□□ 0.49
CD40-203ENST00000461171 WDR62O43379 1518 aa18.08■□□□□ 0.48
CD40-203ENST00000461171 FANCD2Q9BXW9 1451 aa18.03■□□□□ 0.48
CD40-203ENST00000461171 CEP164Q9UPV0 1460 aa18.03■□□□□ 0.48
CD40-203ENST00000461171 CCDC88BA6NC98 1476 aa17.95■□□□□ 0.46
CD40-203ENST00000461171 PRDM2Q13029 1718 aa17.92■□□□□ 0.46
CD40-203ENST00000461171 URB2Q14146 1524 aaKnown RBP17.89■□□□□ 0.45
CD40-203ENST00000461171 PHF23Q9BUL5 403 aaPredicted RBP17.84■□□□□ 0.45
CD40-203ENST00000461171 TOPBP1Q92547 1522 aa17.72■□□□□ 0.43
CD40-203ENST00000461171 ABCC8Q09428 1581 aa17.68■□□□□ 0.42
CD40-203ENST00000461171 DNMBPQ6XZF7 1577 aa17.68■□□□□ 0.42
CD40-203ENST00000461171 IFT140Q96RY7 1462 aa17.68■□□□□ 0.42
CD40-203ENST00000461171 ZNF608Q9ULD9 1512 aaPredicted RBP17.63■□□□□ 0.41
CD40-203ENST00000461171 TARBP1Q13395 1621 aaKnown RBP17.58■□□□□ 0.4
CD40-203ENST00000461171 POLA1P09884 1462 aaPredicted RBP17.56■□□□□ 0.4
CD40-203ENST00000461171 EIF4G3O43432 1585 aaKnown RBP17.56■□□□□ 0.4
CD40-203ENST00000461171 OSCARQ8IYS5 282 aa17.52■□□□□ 0.4
CD40-203ENST00000461171 CUX1P39880 1505 aa17.48■□□□□ 0.39
CD40-203ENST00000461171 SUPT5HO00267 1087 aaKnown RBP17.48■□□□□ 0.39
CD40-203ENST00000461171 AQRO60306 1485 aaKnown RBP eCLIP17.47■□□□□ 0.39
CD40-203ENST00000461171 FGD5Q6ZNL6 1462 aa17.46■□□□□ 0.39
CD40-203ENST00000461171 RAD54L2Q9Y4B4 1467 aa17.46■□□□□ 0.39
CD40-203ENST00000461171 SOGA1O94964 1423 aa17.43■□□□□ 0.38
CD40-203ENST00000461171 WDR97A6NE52 1622 aa17.42■□□□□ 0.38
CD40-203ENST00000461171 TDRD9Q8NDG6 1382 aaKnown RBP17.38■□□□□ 0.37
CD40-203ENST00000461171 CHD1O14646 1710 aa17.37■□□□□ 0.37
CD40-203ENST00000461171 TRIM41Q8WV44 630 aa17.36■□□□□ 0.37
CD40-203ENST00000461171 RIMBP3CA6NJZ7 1639 aa17.33■□□□□ 0.37
CD40-203ENST00000461171 RIMBP3BA6NNM3 1639 aa17.33■□□□□ 0.37
CD40-203ENST00000461171 RIMBP3Q9UFD9 1639 aa17.33■□□□□ 0.37
CD40-203ENST00000461171 ARHGEF11O15085 1522 aa17.31■□□□□ 0.36
CD40-203ENST00000461171 SNAPC4Q5SXM2 1469 aa17.31■□□□□ 0.36
CD40-203ENST00000461171 MAGI1Q96QZ7 1491 aaPredicted RBP17.3■□□□□ 0.36
CD40-203ENST00000461171 ABCA10Q8WWZ4 1543 aa17.29■□□□□ 0.36
CD40-203ENST00000461171 GRIN2BQ13224 1484 aa17.29■□□□□ 0.36
CD40-203ENST00000461171 ABCA5Q8WWZ7 1642 aa17.27■□□□□ 0.36
CD40-203ENST00000461171 BIVM-ERCC5R4GMW8 1640 aa17.26■□□□□ 0.35
CD40-203ENST00000461171 TOP2BQ02880 1626 aa17.25■□□□□ 0.35
CD40-203ENST00000461171 GAPVD1Q14C86 1478 aa17.24■□□□□ 0.35
CD40-203ENST00000461171 SYNJ1O43426 1573 aa17.24■□□□□ 0.35
CD40-203ENST00000461171 WRNQ14191 1432 aaPredicted RBP eCLIP17.24■□□□□ 0.35
CD40-203ENST00000461171 PBRM1Q86U86 1689 aa17.23■□□□□ 0.35
CD40-203ENST00000461171 FBLN2P98095 1184 aa17.23■□□□□ 0.35
CD40-203ENST00000461171 SYNJ2O15056 1496 aa17.23■□□□□ 0.35
CD40-203ENST00000461171 CLASP1Q7Z460 1538 aa17.22■□□□□ 0.35
CD40-203ENST00000461171 CHMP7Q8WUX9 453 aaPredicted RBP17.16■□□□□ 0.34
CD40-203ENST00000461171 ARAP1Q96P48 1450 aa17.16■□□□□ 0.34
CD40-203ENST00000461171 ADAMTS12P58397 1594 aa17.12■□□□□ 0.33
CD40-203ENST00000461171 GRIN2AQ12879 1464 aa17.09■□□□□ 0.33
CD40-203ENST00000461171 CYB5RLQ6IPT4 315 aa17.08■□□□□ 0.32
CD40-203ENST00000461171 ERICH3Q5RHP9 1530 aa17.07■□□□□ 0.32
CD40-203ENST00000461171 FHAD1B1AJZ9 1412 aa17.04■□□□□ 0.32
CD40-203ENST00000461171 NUP160Q12769 1436 aa17.04■□□□□ 0.32
CD40-203ENST00000461171 CEP170Q5SW79 1584 aa17.02■□□□□ 0.32
CD40-203ENST00000461171 FOXD1Q16676 465 aa16.99■□□□□ 0.31
CD40-203ENST00000461171 SHROOM2Q13796 1616 aa16.96■□□□□ 0.3
CD40-203ENST00000461171 ERCC6L2Q5T890 1561 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 275.4 ms