RNA–Protein interactions for RNA: ENST00000460483.5

SMNDC1-203, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 3

Gene SMNDC1, Length 753 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-203ENST00000460483 AEBP2Q6ZN18 517 aaPredicted RBP27.67■■■□□ 2.02
SMNDC1-203ENST00000460483 CHIC1Q5VXU3 224 aa26.17■■□□□ 1.78
SMNDC1-203ENST00000460483 NISCHQ9Y2I1 1504 aa25.73■■□□□ 1.71
SMNDC1-203ENST00000460483 SENP3Q9H4L4 574 aaPredicted RBP23.68■■□□□ 1.38
SMNDC1-203ENST00000460483 PHF23Q9BUL5 403 aaPredicted RBP23.36■■□□□ 1.33
SMNDC1-203ENST00000460483 CCDC180Q9P1Z9 1646 aa22.68■■□□□ 1.22
SMNDC1-203ENST00000460483 FOXD1Q16676 465 aa22.06■■□□□ 1.12
SMNDC1-203ENST00000460483 ABCC9O60706 1549 aa21.88■■□□□ 1.09
SMNDC1-203ENST00000460483 DCAF8L2P0C7V8 631 aa21.5■■□□□ 1.03
SMNDC1-203ENST00000460483 ZCCHC6Q5VYS8 1495 aaKnown RBP21.48■■□□□ 1.03
SMNDC1-203ENST00000460483 DCAF1Q9Y4B6 1507 aa21.37■■□□□ 1.01
SMNDC1-203ENST00000460483 MYO15BQ96JP2 1530 aa21.36■■□□□ 1.01
SMNDC1-203ENST00000460483 NACADO15069 1562 aa21.35■■□□□ 1.01
SMNDC1-203ENST00000460483 RB1CC1Q8TDY2 1594 aa21.27■■□□□ 1
SMNDC1-203ENST00000460483 PLPPR3Q6T4P5 718 aa20.9■□□□□ 0.94
SMNDC1-203ENST00000460483 MSH5O43196 834 aa20.73■□□□□ 0.91
SMNDC1-203ENST00000460483 SCRIBQ14160 1630 aa20.67■□□□□ 0.9
SMNDC1-203ENST00000460483 PIAS4Q8N2W9 510 aaPredicted RBP20.65■□□□□ 0.9
SMNDC1-203ENST00000460483 PABPN1Q86U42 306 aaKnown RBP eCLIP20.54■□□□□ 0.88
SMNDC1-203ENST00000460483 SHROOM4Q9ULL8 1493 aa20.53■□□□□ 0.88
SMNDC1-203ENST00000460483 PPP6R1Q9UPN7 881 aa20.52■□□□□ 0.88
SMNDC1-203ENST00000460483 ADRA2BP18089 450 aa20.49■□□□□ 0.87
SMNDC1-203ENST00000460483 UNC13AQ9UPW8 1703 aa20.45■□□□□ 0.86
SMNDC1-203ENST00000460483 POTEDQ86YR6 584 aa20.43■□□□□ 0.86
SMNDC1-203ENST00000460483 BICRAQ9NZM4 1560 aa20.42■□□□□ 0.86
SMNDC1-203ENST00000460483 BAZ1AQ9NRL2 1556 aaPredicted RBP19.97■□□□□ 0.79
SMNDC1-203ENST00000460483 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
SMNDC1-203ENST00000460483 CECR2Q9BXF3 1484 aa19.91■□□□□ 0.78
SMNDC1-203ENST00000460483 SMARCA4P51532 1647 aa19.83■□□□□ 0.76
SMNDC1-203ENST00000460483 SMARCA2P51531 1590 aa19.76■□□□□ 0.75
SMNDC1-203ENST00000460483 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
SMNDC1-203ENST00000460483 MROH2BQ7Z745 1585 aa19.75■□□□□ 0.75
SMNDC1-203ENST00000460483 RSF1Q96T23 1441 aaPredicted RBP19.74■□□□□ 0.75
SMNDC1-203ENST00000460483 ATAD2BQ9ULI0 1458 aa19.71■□□□□ 0.75
SMNDC1-203ENST00000460483 NCAPD3P42695 1498 aa19.7■□□□□ 0.74
SMNDC1-203ENST00000460483 DNAJC5BQ9UF47 199 aa19.68■□□□□ 0.74
SMNDC1-203ENST00000460483 PEG3Q9GZU2 1588 aa19.67■□□□□ 0.74
SMNDC1-203ENST00000460483 BAZ1BQ9UIG0 1483 aaKnown RBP19.61■□□□□ 0.73
SMNDC1-203ENST00000460483 HMGXB3Q12766 1538 aa19.59■□□□□ 0.73
SMNDC1-203ENST00000460483 SUPT5HO00267 1087 aaKnown RBP19.57■□□□□ 0.72
SMNDC1-203ENST00000460483 WIZO95785 1651 aa19.49■□□□□ 0.71
SMNDC1-203ENST00000460483 TOP2AP11388 1531 aaKnown RBP19.44■□□□□ 0.7
SMNDC1-203ENST00000460483 CCDC88BA6NC98 1476 aa19.2■□□□□ 0.66
SMNDC1-203ENST00000460483 CADPSQ9ULU8 1353 aa19.18■□□□□ 0.66
SMNDC1-203ENST00000460483 LAMC3Q9Y6N6 1575 aa19.1■□□□□ 0.65
SMNDC1-203ENST00000460483 CFTRP13569 1480 aa19.08■□□□□ 0.64
SMNDC1-203ENST00000460483 PDS5BQ9NTI5 1447 aa19.08■□□□□ 0.64
SMNDC1-203ENST00000460483 ERCC6Q03468 1493 aa18.96■□□□□ 0.63
SMNDC1-203ENST00000460483 NESP48681 1621 aa18.96■□□□□ 0.63
SMNDC1-203ENST00000460483 FANCD2Q9BXW9 1451 aa18.9■□□□□ 0.62
SMNDC1-203ENST00000460483 CEP164Q9UPV0 1460 aa18.87■□□□□ 0.61
SMNDC1-203ENST00000460483 MAPK8IP2Q13387 824 aaPredicted RBP18.86■□□□□ 0.61
SMNDC1-203ENST00000460483 SCAF1Q9H7N4 1312 aaKnown RBP18.79■□□□□ 0.6
SMNDC1-203ENST00000460483 ABCC8Q09428 1581 aa18.79■□□□□ 0.6
SMNDC1-203ENST00000460483 PRDM2Q13029 1718 aa18.76■□□□□ 0.59
SMNDC1-203ENST00000460483 MRC2Q9UBG0 1479 aa18.75■□□□□ 0.59
SMNDC1-203ENST00000460483 DMRT2Q9Y5R5 561 aa18.73■□□□□ 0.59
SMNDC1-203ENST00000460483 KIF21AQ7Z4S6 1674 aa18.66■□□□□ 0.58
SMNDC1-203ENST00000460483 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
SMNDC1-203ENST00000460483 CUX2O14529 1486 aa18.62■□□□□ 0.57
SMNDC1-203ENST00000460483 WDR62O43379 1518 aa18.62■□□□□ 0.57
SMNDC1-203ENST00000460483 DNMBPQ6XZF7 1577 aa18.6■□□□□ 0.57
SMNDC1-203ENST00000460483 URB2Q14146 1524 aaKnown RBP18.59■□□□□ 0.57
SMNDC1-203ENST00000460483 TOPBP1Q92547 1522 aa18.59■□□□□ 0.57
SMNDC1-203ENST00000460483 THOC2Q8NI27 1593 aaKnown RBP18.58■□□□□ 0.56
SMNDC1-203ENST00000460483 TRIM41Q8WV44 630 aa18.57■□□□□ 0.56
SMNDC1-203ENST00000460483 CUX1P39880 1505 aa18.52■□□□□ 0.56
SMNDC1-203ENST00000460483 TOP2BQ02880 1626 aa18.49■□□□□ 0.55
SMNDC1-203ENST00000460483 IFT140Q96RY7 1462 aa18.48■□□□□ 0.55
SMNDC1-203ENST00000460483 SOGA1O94964 1423 aa18.48■□□□□ 0.55
SMNDC1-203ENST00000460483 FGD5Q6ZNL6 1462 aa18.46■□□□□ 0.55
SMNDC1-203ENST00000460483 POLA1P09884 1462 aaPredicted RBP18.46■□□□□ 0.54
SMNDC1-203ENST00000460483 BIVM-ERCC5R4GMW8 1640 aa18.44■□□□□ 0.54
SMNDC1-203ENST00000460483 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
SMNDC1-203ENST00000460483 ABCA10Q8WWZ4 1543 aa18.33■□□□□ 0.53
SMNDC1-203ENST00000460483 RAD54L2Q9Y4B4 1467 aa18.33■□□□□ 0.53
SMNDC1-203ENST00000460483 WDR97A6NE52 1622 aa18.32■□□□□ 0.52
SMNDC1-203ENST00000460483 KIF27Q86VH2 1401 aa18.32■□□□□ 0.52
SMNDC1-203ENST00000460483 PPP4R3CPQ6ZMV5 832 aa18.3■□□□□ 0.52
SMNDC1-203ENST00000460483 TARBP1Q13395 1621 aaKnown RBP18.28■□□□□ 0.52
SMNDC1-203ENST00000460483 TDRD9Q8NDG6 1382 aaKnown RBP18.28■□□□□ 0.52
SMNDC1-203ENST00000460483 GAPVD1Q14C86 1478 aa18.25■□□□□ 0.51
SMNDC1-203ENST00000460483 EEA1Q15075 1411 aa18.24■□□□□ 0.51
SMNDC1-203ENST00000460483 GRIN2BQ13224 1484 aa18.22■□□□□ 0.51
SMNDC1-203ENST00000460483 ZNF608Q9ULD9 1512 aaPredicted RBP18.22■□□□□ 0.51
SMNDC1-203ENST00000460483 AQRO60306 1485 aaKnown RBP eCLIP18.21■□□□□ 0.512e-6■■■■■ 28.3
SMNDC1-203ENST00000460483 EIF4G3O43432 1585 aaKnown RBP18.16■□□□□ 0.5
SMNDC1-203ENST00000460483 ERICH3Q5RHP9 1530 aa18.15■□□□□ 0.5
SMNDC1-203ENST00000460483 MAGI1Q96QZ7 1491 aaPredicted RBP18.14■□□□□ 0.49
SMNDC1-203ENST00000460483 CSRNP3Q8WYN3 585 aa18.13■□□□□ 0.49
SMNDC1-203ENST00000460483 ABCA5Q8WWZ7 1642 aa18.12■□□□□ 0.49
SMNDC1-203ENST00000460483 DCAF8L1A6NGE4 600 aa18.12■□□□□ 0.49
SMNDC1-203ENST00000460483 CHMP7Q8WUX9 453 aaPredicted RBP18.12■□□□□ 0.49
SMNDC1-203ENST00000460483 IGF1RP08069 1367 aa18.12■□□□□ 0.49
SMNDC1-203ENST00000460483 FHAD1B1AJZ9 1412 aa18.08■□□□□ 0.49
SMNDC1-203ENST00000460483 FBLN2P98095 1184 aa18.08■□□□□ 0.48
SMNDC1-203ENST00000460483 SNAPC4Q5SXM2 1469 aa18.07■□□□□ 0.48
SMNDC1-203ENST00000460483 CARMIL1Q5VZK9 1371 aa18.06■□□□□ 0.48
SMNDC1-203ENST00000460483 FAM9AQ8IZU1 332 aaPredicted RBP18.05■□□□□ 0.48
SMNDC1-203ENST00000460483 SYNJ2O15056 1496 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms