RNA–Protein interactions for RNA: ENST00000459788.1

HDLBP-228, Transcript of high density lipoprotein binding protein, humanhuman

TSL 2

Gene HDLBP, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-228ENST00000459788 NISCHQ9Y2I1 1504 aa24.85■■□□□ 1.57
HDLBP-228ENST00000459788 CCDC180Q9P1Z9 1646 aa22.35■■□□□ 1.17
HDLBP-228ENST00000459788 ABCC9O60706 1549 aa21.86■■□□□ 1.09
HDLBP-228ENST00000459788 RB1CC1Q8TDY2 1594 aa21.09■□□□□ 0.97
HDLBP-228ENST00000459788 NACADO15069 1562 aa21.02■□□□□ 0.96
HDLBP-228ENST00000459788 MYO15BQ96JP2 1530 aa20.88■□□□□ 0.93
HDLBP-228ENST00000459788 DCAF1Q9Y4B6 1507 aa20.67■□□□□ 0.9
HDLBP-228ENST00000459788 ZCCHC6Q5VYS8 1495 aaKnown RBP20.65■□□□□ 0.9
HDLBP-228ENST00000459788 DCAF8L2P0C7V8 631 aa20.65■□□□□ 0.9
HDLBP-228ENST00000459788 UNC13AQ9UPW8 1703 aa20.61■□□□□ 0.89
HDLBP-228ENST00000459788 BICRAQ9NZM4 1560 aa20.4■□□□□ 0.86
HDLBP-228ENST00000459788 SHROOM4Q9ULL8 1493 aa20.34■□□□□ 0.85
HDLBP-228ENST00000459788 PABPN1Q86U42 306 aaKnown RBP eCLIP20.31■□□□□ 0.84
HDLBP-228ENST00000459788 DNAJC5BQ9UF47 199 aa20.26■□□□□ 0.83
HDLBP-228ENST00000459788 SCRIBQ14160 1630 aa20.16■□□□□ 0.82
HDLBP-228ENST00000459788 EIF4G1Q04637 1599 aaKnown RBP19.89■□□□□ 0.77
HDLBP-228ENST00000459788 CC2D2AQ9P2K1 1620 aa19.86■□□□□ 0.77
HDLBP-228ENST00000459788 CECR2Q9BXF3 1484 aa19.74■□□□□ 0.75
HDLBP-228ENST00000459788 NCAPD3P42695 1498 aa19.36■□□□□ 0.69
HDLBP-228ENST00000459788 SMARCA4P51532 1647 aa19.35■□□□□ 0.69
HDLBP-228ENST00000459788 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
HDLBP-228ENST00000459788 BAZ1AQ9NRL2 1556 aaPredicted RBP19.32■□□□□ 0.68
HDLBP-228ENST00000459788 HMGXB3Q12766 1538 aa19.28■□□□□ 0.68
HDLBP-228ENST00000459788 ATAD2BQ9ULI0 1458 aa19.28■□□□□ 0.68
HDLBP-228ENST00000459788 PEG3Q9GZU2 1588 aa19.25■□□□□ 0.67
HDLBP-228ENST00000459788 BAZ1BQ9UIG0 1483 aaKnown RBP19.1■□□□□ 0.65
HDLBP-228ENST00000459788 MROH2BQ7Z745 1585 aa19.08■□□□□ 0.65
HDLBP-228ENST00000459788 LAMC3Q9Y6N6 1575 aa18.93■□□□□ 0.62
HDLBP-228ENST00000459788 CUX2O14529 1486 aa18.92■□□□□ 0.62
HDLBP-228ENST00000459788 ERCC6Q03468 1493 aa18.91■□□□□ 0.62
HDLBP-228ENST00000459788 WIZO95785 1651 aa18.88■□□□□ 0.61
HDLBP-228ENST00000459788 NESP48681 1621 aa18.84■□□□□ 0.61
HDLBP-228ENST00000459788 RSF1Q96T23 1441 aaPredicted RBP18.78■□□□□ 0.6
HDLBP-228ENST00000459788 PDS5BQ9NTI5 1447 aa18.76■□□□□ 0.59
HDLBP-228ENST00000459788 CADPSQ9ULU8 1353 aa18.74■□□□□ 0.59
HDLBP-228ENST00000459788 THOC2Q8NI27 1593 aaKnown RBP18.73■□□□□ 0.59
HDLBP-228ENST00000459788 TOP2AP11388 1531 aaKnown RBP18.72■□□□□ 0.59
HDLBP-228ENST00000459788 KIF21AQ7Z4S6 1674 aa18.72■□□□□ 0.59
HDLBP-228ENST00000459788 CFTRP13569 1480 aa18.59■□□□□ 0.57
HDLBP-228ENST00000459788 PRDM2Q13029 1718 aa18.57■□□□□ 0.56
HDLBP-228ENST00000459788 DNAJC5Q9H3Z4 198 aa18.57■□□□□ 0.56
HDLBP-228ENST00000459788 MRC2Q9UBG0 1479 aa18.57■□□□□ 0.56
HDLBP-228ENST00000459788 WDR62O43379 1518 aa18.54■□□□□ 0.56
HDLBP-228ENST00000459788 CEP164Q9UPV0 1460 aa18.53■□□□□ 0.56
HDLBP-228ENST00000459788 FANCD2Q9BXW9 1451 aa18.51■□□□□ 0.55
HDLBP-228ENST00000459788 CCDC88BA6NC98 1476 aa18.44■□□□□ 0.54
HDLBP-228ENST00000459788 URB2Q14146 1524 aaKnown RBP18.32■□□□□ 0.52
HDLBP-228ENST00000459788 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
HDLBP-228ENST00000459788 TOPBP1Q92547 1522 aa18.19■□□□□ 0.5
HDLBP-228ENST00000459788 DNMBPQ6XZF7 1577 aa18.19■□□□□ 0.5
HDLBP-228ENST00000459788 IFT140Q96RY7 1462 aa18.18■□□□□ 0.5
HDLBP-228ENST00000459788 TARBP1Q13395 1621 aaKnown RBP18.05■□□□□ 0.48
HDLBP-228ENST00000459788 WDR97A6NE52 1622 aa18.02■□□□□ 0.48
HDLBP-228ENST00000459788 EIF4G3O43432 1585 aaKnown RBP18.01■□□□□ 0.47
HDLBP-228ENST00000459788 OSCARQ8IYS5 282 aa18.01■□□□□ 0.47
HDLBP-228ENST00000459788 ZNF608Q9ULD9 1512 aaPredicted RBP18.01■□□□□ 0.47
HDLBP-228ENST00000459788 POLA1P09884 1462 aaPredicted RBP18.01■□□□□ 0.47
HDLBP-228ENST00000459788 SUPT5HO00267 1087 aaKnown RBP17.95■□□□□ 0.46
HDLBP-228ENST00000459788 CUX1P39880 1505 aa17.93■□□□□ 0.46
HDLBP-228ENST00000459788 SOGA1O94964 1423 aa17.92■□□□□ 0.46
HDLBP-228ENST00000459788 FGD5Q6ZNL6 1462 aa17.91■□□□□ 0.46
HDLBP-228ENST00000459788 AQRO60306 1485 aaKnown RBP eCLIP17.88■□□□□ 0.45
HDLBP-228ENST00000459788 RAD54L2Q9Y4B4 1467 aa17.86■□□□□ 0.45
HDLBP-228ENST00000459788 CHD1O14646 1710 aa17.86■□□□□ 0.45
HDLBP-228ENST00000459788 BIVM-ERCC5R4GMW8 1640 aa17.8■□□□□ 0.44
HDLBP-228ENST00000459788 MAGI1Q96QZ7 1491 aaPredicted RBP17.8■□□□□ 0.44
HDLBP-228ENST00000459788 TDRD9Q8NDG6 1382 aaKnown RBP17.79■□□□□ 0.44
HDLBP-228ENST00000459788 ABCA10Q8WWZ4 1543 aa17.78■□□□□ 0.44
HDLBP-228ENST00000459788 GRIN2BQ13224 1484 aa17.78■□□□□ 0.44
HDLBP-228ENST00000459788 TOP2BQ02880 1626 aa17.78■□□□□ 0.44
HDLBP-228ENST00000459788 PBRM1Q86U86 1689 aa17.77■□□□□ 0.43
HDLBP-228ENST00000459788 RIMBP3CA6NJZ7 1639 aa17.76■□□□□ 0.43
HDLBP-228ENST00000459788 RIMBP3BA6NNM3 1639 aa17.76■□□□□ 0.43
HDLBP-228ENST00000459788 RIMBP3Q9UFD9 1639 aa17.76■□□□□ 0.43
HDLBP-228ENST00000459788 ABCA5Q8WWZ7 1642 aa17.75■□□□□ 0.43
HDLBP-228ENST00000459788 WRNQ14191 1432 aaPredicted RBP eCLIP17.73■□□□□ 0.43
HDLBP-228ENST00000459788 GAPVD1Q14C86 1478 aa17.73■□□□□ 0.43
HDLBP-228ENST00000459788 SNAPC4Q5SXM2 1469 aa17.73■□□□□ 0.43
HDLBP-228ENST00000459788 ARHGEF11O15085 1522 aa17.72■□□□□ 0.43
HDLBP-228ENST00000459788 SYNJ2O15056 1496 aa17.7■□□□□ 0.42
HDLBP-228ENST00000459788 SYNJ1O43426 1573 aa17.7■□□□□ 0.42
HDLBP-228ENST00000459788 TRIM41Q8WV44 630 aa17.69■□□□□ 0.42
HDLBP-228ENST00000459788 FBLN2P98095 1184 aa17.66■□□□□ 0.42
HDLBP-228ENST00000459788 CLASP1Q7Z460 1538 aa17.66■□□□□ 0.42
HDLBP-228ENST00000459788 CHMP7Q8WUX9 453 aaPredicted RBP17.65■□□□□ 0.42
HDLBP-228ENST00000459788 ERICH3Q5RHP9 1530 aa17.6■□□□□ 0.41
HDLBP-228ENST00000459788 ADAMTS12P58397 1594 aa17.57■□□□□ 0.4
HDLBP-228ENST00000459788 GRIN2AQ12879 1464 aa17.54■□□□□ 0.4
HDLBP-228ENST00000459788 ARAP1Q96P48 1450 aa17.54■□□□□ 0.4
HDLBP-228ENST00000459788 FHAD1B1AJZ9 1412 aa17.54■□□□□ 0.4
HDLBP-228ENST00000459788 NUP160Q12769 1436 aa17.49■□□□□ 0.39
HDLBP-228ENST00000459788 CYB5RLQ6IPT4 315 aa17.48■□□□□ 0.39
HDLBP-228ENST00000459788 CEP170Q5SW79 1584 aa17.45■□□□□ 0.38
HDLBP-228ENST00000459788 SHROOM2Q13796 1616 aa17.44■□□□□ 0.38
HDLBP-228ENST00000459788 CUL7Q14999 1698 aa17.41■□□□□ 0.38
HDLBP-228ENST00000459788 KIF27Q86VH2 1401 aa17.4■□□□□ 0.38
HDLBP-228ENST00000459788 RUSC2Q8N2Y8 1516 aa17.32■□□□□ 0.36
HDLBP-228ENST00000459788 IGF1RP08069 1367 aa17.32■□□□□ 0.36
HDLBP-228ENST00000459788 ERCC6L2Q5T890 1561 aa17.28■□□□□ 0.36
HDLBP-228ENST00000459788 KIAA0586Q9BVV6 1533 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms