RNA–Protein interactions for RNA: ENST00000456923.5

FN1-213, Transcript of fibronectin 1, humanhuman

TSL 2

Gene FN1, Length 3,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-213ENST00000456923 NISCHQ9Y2I1 1504 aa15.63■□□□□ 0.09
FN1-213ENST00000456923 CCDC180Q9P1Z9 1646 aa14.28□□□□□ -0.12
FN1-213ENST00000456923 MYO15BQ96JP2 1530 aa13.44□□□□□ -0.26
FN1-213ENST00000456923 DCAF1Q9Y4B6 1507 aa13.32□□□□□ -0.28
FN1-213ENST00000456923 NACADO15069 1562 aa13.21□□□□□ -0.29
FN1-213ENST00000456923 ZCCHC6Q5VYS8 1495 aaKnown RBP13.12□□□□□ -0.31
FN1-213ENST00000456923 RB1CC1Q8TDY2 1594 aa13.11□□□□□ -0.31
FN1-213ENST00000456923 ABCC9O60706 1549 aa13.09□□□□□ -0.31
FN1-213ENST00000456923 SHROOM4Q9ULL8 1493 aa13□□□□□ -0.33
FN1-213ENST00000456923 UNC13AQ9UPW8 1703 aa12.95□□□□□ -0.34
FN1-213ENST00000456923 BICRAQ9NZM4 1560 aa12.75□□□□□ -0.37
FN1-213ENST00000456923 SCRIBQ14160 1630 aa12.43□□□□□ -0.42
FN1-213ENST00000456923 PEG3Q9GZU2 1588 aa12.32□□□□□ -0.44
FN1-213ENST00000456923 EIF4G1Q04637 1599 aaKnown RBP12.29□□□□□ -0.44
FN1-213ENST00000456923 CC2D2AQ9P2K1 1620 aa12.19□□□□□ -0.46
FN1-213ENST00000456923 SMARCA2P51531 1590 aa12.18□□□□□ -0.46
FN1-213ENST00000456923 HMGXB3Q12766 1538 aa12.18□□□□□ -0.46
FN1-213ENST00000456923 SMARCA4P51532 1647 aa12.17□□□□□ -0.46
FN1-213ENST00000456923 BAZ1AQ9NRL2 1556 aaPredicted RBP12.14□□□□□ -0.47
FN1-213ENST00000456923 NCAPD3P42695 1498 aa12.08□□□□□ -0.48
FN1-213ENST00000456923 ATAD2BQ9ULI0 1458 aa11.97□□□□□ -0.49
FN1-213ENST00000456923 PABPN1Q86U42 306 aaKnown RBP eCLIP11.96□□□□□ -0.5
FN1-213ENST00000456923 PRDM2Q13029 1718 aa11.94□□□□□ -0.5
FN1-213ENST00000456923 DCAF8L2P0C7V8 631 aa11.93□□□□□ -0.5
FN1-213ENST00000456923 CECR2Q9BXF3 1484 aa11.93□□□□□ -0.5
FN1-213ENST00000456923 MROH2BQ7Z745 1585 aa11.89□□□□□ -0.51
FN1-213ENST00000456923 DNAJC5BQ9UF47 199 aa11.88□□□□□ -0.51
FN1-213ENST00000456923 TOP2AP11388 1531 aaKnown RBP11.85□□□□□ -0.51
FN1-213ENST00000456923 LAMC3Q9Y6N6 1575 aa11.83□□□□□ -0.51
FN1-213ENST00000456923 WIZO95785 1651 aa11.78□□□□□ -0.52
FN1-213ENST00000456923 BAZ1BQ9UIG0 1483 aaKnown RBP11.78□□□□□ -0.52
FN1-213ENST00000456923 RSF1Q96T23 1441 aaPredicted RBP11.75□□□□□ -0.53
FN1-213ENST00000456923 PELP1Q8IZL8 1130 aaKnown RBP11.72□□□□□ -0.53
FN1-213ENST00000456923 THOC2Q8NI27 1593 aaKnown RBP11.68□□□□□ -0.54
FN1-213ENST00000456923 CUX2O14529 1486 aa11.64□□□□□ -0.55
FN1-213ENST00000456923 CFTRP13569 1480 aa11.62□□□□□ -0.55
FN1-213ENST00000456923 KIF21AQ7Z4S6 1674 aa11.59□□□□□ -0.55
FN1-213ENST00000456923 WDR62O43379 1518 aa11.59□□□□□ -0.55
FN1-213ENST00000456923 WDR97A6NE52 1622 aa11.59□□□□□ -0.55
FN1-213ENST00000456923 CADPSQ9ULU8 1353 aa11.53□□□□□ -0.56
FN1-213ENST00000456923 PDS5BQ9NTI5 1447 aa11.49□□□□□ -0.57
FN1-213ENST00000456923 CCDC88BA6NC98 1476 aa11.49□□□□□ -0.57
FN1-213ENST00000456923 MYT1Q01538 1121 aa11.46□□□□□ -0.57
FN1-213ENST00000456923 ABCC8Q09428 1581 aa11.46□□□□□ -0.57
FN1-213ENST00000456923 MRC2Q9UBG0 1479 aa11.46□□□□□ -0.58
FN1-213ENST00000456923 DNMBPQ6XZF7 1577 aa11.41□□□□□ -0.58
FN1-213ENST00000456923 NESP48681 1621 aa11.41□□□□□ -0.58
FN1-213ENST00000456923 BIVM-ERCC5R4GMW8 1640 aa11.41□□□□□ -0.58
FN1-213ENST00000456923 CEP164Q9UPV0 1460 aa11.4□□□□□ -0.58
FN1-213ENST00000456923 FANCD2Q9BXW9 1451 aa11.38□□□□□ -0.59
FN1-213ENST00000456923 TARBP1Q13395 1621 aaKnown RBP11.34□□□□□ -0.59
FN1-213ENST00000456923 URB2Q14146 1524 aaKnown RBP11.33□□□□□ -0.6
FN1-213ENST00000456923 ERCC6Q03468 1493 aa11.3□□□□□ -0.6
FN1-213ENST00000456923 PRKCSHP14314 528 aaPredicted RBP11.29□□□□□ -0.6
FN1-213ENST00000456923 TOP2BQ02880 1626 aa11.28□□□□□ -0.6
FN1-213ENST00000456923 TOPBP1Q92547 1522 aa11.28□□□□□ -0.6
FN1-213ENST00000456923 IFT140Q96RY7 1462 aa11.26□□□□□ -0.61
FN1-213ENST00000456923 ABCA5Q8WWZ7 1642 aa11.23□□□□□ -0.61
FN1-213ENST00000456923 CUX1P39880 1505 aa11.21□□□□□ -0.62
FN1-213ENST00000456923 PBRM1Q86U86 1689 aa11.18□□□□□ -0.62
FN1-213ENST00000456923 EIF4G3O43432 1585 aaKnown RBP11.17□□□□□ -0.62
FN1-213ENST00000456923 ABCA10Q8WWZ4 1543 aa11.17□□□□□ -0.62
FN1-213ENST00000456923 POLA1P09884 1462 aaPredicted RBP11.14□□□□□ -0.63
FN1-213ENST00000456923 SYNJ1O43426 1573 aa11.11□□□□□ -0.63
FN1-213ENST00000456923 ERICH3Q5RHP9 1530 aa11.1□□□□□ -0.63
FN1-213ENST00000456923 MAGI1Q96QZ7 1491 aaPredicted RBP11.08□□□□□ -0.64
FN1-213ENST00000456923 FGD5Q6ZNL6 1462 aa11.07□□□□□ -0.64
FN1-213ENST00000456923 CUL7Q14999 1698 aa11.06□□□□□ -0.64
FN1-213ENST00000456923 PPARGC1BQ86YN6 1023 aaKnown RBP11.06□□□□□ -0.64
FN1-213ENST00000456923 CLASP1Q7Z460 1538 aa11.05□□□□□ -0.64
FN1-213ENST00000456923 ADAMTS12P58397 1594 aa11.05□□□□□ -0.64
FN1-213ENST00000456923 CHD1O14646 1710 aa11.04□□□□□ -0.64
FN1-213ENST00000456923 SHROOM2Q13796 1616 aa11.04□□□□□ -0.64
FN1-213ENST00000456923 BCL11AQ9H165 835 aa11.01□□□□□ -0.65
FN1-213ENST00000456923 WRNQ14191 1432 aaPredicted RBP eCLIP11.01□□□□□ -0.65
FN1-213ENST00000456923 GRIN2BQ13224 1484 aa10.99□□□□□ -0.65
FN1-213ENST00000456923 ZNF608Q9ULD9 1512 aaPredicted RBP10.96□□□□□ -0.65
FN1-213ENST00000456923 SOGA1O94964 1423 aa10.96□□□□□ -0.66
FN1-213ENST00000456923 SYNJ2O15056 1496 aa10.95□□□□□ -0.66
FN1-213ENST00000456923 GAPVD1Q14C86 1478 aa10.92□□□□□ -0.66
FN1-213ENST00000456923 NUP160Q12769 1436 aa10.92□□□□□ -0.66
FN1-213ENST00000456923 SCAF1Q9H7N4 1312 aaKnown RBP10.9□□□□□ -0.66
FN1-213ENST00000456923 RAD54L2Q9Y4B4 1467 aa10.9□□□□□ -0.67
FN1-213ENST00000456923 RUSC2Q8N2Y8 1516 aa10.89□□□□□ -0.67
FN1-213ENST00000456923 FAM9AQ8IZU1 332 aaPredicted RBP10.88□□□□□ -0.67
FN1-213ENST00000456923 FHAD1B1AJZ9 1412 aa10.88□□□□□ -0.67
FN1-213ENST00000456923 SNAPC4Q5SXM2 1469 aa10.87□□□□□ -0.67
FN1-213ENST00000456923 CEP170Q5SW79 1584 aa10.85□□□□□ -0.67
FN1-213ENST00000456923 GRIN2AQ12879 1464 aa10.85□□□□□ -0.67
FN1-213ENST00000456923 CTTNBP2Q8WZ74 1663 aa10.85□□□□□ -0.67
FN1-213ENST00000456923 ERICH6Q7L0X2 663 aa10.85□□□□□ -0.67
FN1-213ENST00000456923 EEA1Q15075 1411 aa10.84□□□□□ -0.67
FN1-213ENST00000456923 RIMBP3CA6NJZ7 1639 aa10.83□□□□□ -0.68
FN1-213ENST00000456923 RIMBP3BA6NNM3 1639 aa10.83□□□□□ -0.68
FN1-213ENST00000456923 RIMBP3Q9UFD9 1639 aa10.83□□□□□ -0.68
FN1-213ENST00000456923 DNAJC5Q9H3Z4 198 aa10.83□□□□□ -0.68
FN1-213ENST00000456923 TTBK1Q5TCY1 1321 aaPredicted RBP10.82□□□□□ -0.68
FN1-213ENST00000456923 SLC24A1O60721 1099 aa10.82□□□□□ -0.68
FN1-213ENST00000456923 HRCP23327 699 aa10.81□□□□□ -0.68
FN1-213ENST00000456923 AQRO60306 1485 aaKnown RBP eCLIP10.81□□□□□ -0.682e-14■■■■■ 29.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms