RNA–Protein interactions for RNA: ENST00000456210.5

SEMA3B-208, Transcript of semaphorin 3B, humanhuman

TSL 2

Gene SEMA3B, Length 2,065 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-208ENST00000456210 NISCHQ9Y2I1 1504 aa38.09■■■■□ 3.69
SEMA3B-208ENST00000456210 CCDC180Q9P1Z9 1646 aa33.26■■■□□ 2.92
SEMA3B-208ENST00000456210 ABCC9O60706 1549 aa32.29■■■□□ 2.76
SEMA3B-208ENST00000456210 ZCCHC6Q5VYS8 1495 aaKnown RBP32.09■■■□□ 2.73
SEMA3B-208ENST00000456210 SHROOM4Q9ULL8 1493 aa32.08■■■□□ 2.73
SEMA3B-208ENST00000456210 SUPT5HO00267 1087 aaKnown RBP31.77■■■□□ 2.68
SEMA3B-208ENST00000456210 DCAF8L2P0C7V8 631 aa31.74■■■□□ 2.67
SEMA3B-208ENST00000456210 HRCP23327 699 aa31.74■■■□□ 2.67
SEMA3B-208ENST00000456210 MYO15BQ96JP2 1530 aa31.55■■■□□ 2.64
SEMA3B-208ENST00000456210 DCAF1Q9Y4B6 1507 aa31.46■■■□□ 2.63
SEMA3B-208ENST00000456210 CHIC1Q5VXU3 224 aa31.39■■■□□ 2.62
SEMA3B-208ENST00000456210 NACADO15069 1562 aa31.15■■■□□ 2.58
SEMA3B-208ENST00000456210 RB1CC1Q8TDY2 1594 aa31.08■■■□□ 2.57
SEMA3B-208ENST00000456210 PCGF6Q9BYE7 350 aa31.07■■■□□ 2.56
SEMA3B-208ENST00000456210 PPARGC1BQ86YN6 1023 aaKnown RBP30.8■■■□□ 2.52
SEMA3B-208ENST00000456210 SCRIBQ14160 1630 aa30.68■■■□□ 2.5
SEMA3B-208ENST00000456210 UNC13AQ9UPW8 1703 aa30.59■■■□□ 2.49
SEMA3B-208ENST00000456210 TRIM26Q12899 539 aaPredicted RBP30.43■■■□□ 2.46
SEMA3B-208ENST00000456210 LOC105371045A0A1W2PR82 267 aa30.38■■■□□ 2.45
SEMA3B-208ENST00000456210 PABPN1Q86U42 306 aaKnown RBP eCLIP30.38■■■□□ 2.453e-8■■■■□ 20.2
SEMA3B-208ENST00000456210 BICRAQ9NZM4 1560 aa30.25■■■□□ 2.43
SEMA3B-208ENST00000456210 ZEB1P37275 1124 aaPredicted RBP30.16■■■□□ 2.42
SEMA3B-208ENST00000456210 PELP1Q8IZL8 1130 aaKnown RBP30.13■■■□□ 2.41
SEMA3B-208ENST00000456210 RSF1Q96T23 1441 aaPredicted RBP29.76■■■□□ 2.35
SEMA3B-208ENST00000456210 SCAF1Q9H7N4 1312 aaKnown RBP29.67■■■□□ 2.34
SEMA3B-208ENST00000456210 TRIM41Q8WV44 630 aa29.61■■■□□ 2.33
SEMA3B-208ENST00000456210 CECR2Q9BXF3 1484 aa29.6■■■□□ 2.33
SEMA3B-208ENST00000456210 MROH2BQ7Z745 1585 aa29.46■■■□□ 2.31
SEMA3B-208ENST00000456210 BAZ1AQ9NRL2 1556 aaPredicted RBP29.38■■■□□ 2.29
SEMA3B-208ENST00000456210 EIF4G1Q04637 1599 aaKnown RBP29.38■■■□□ 2.29
SEMA3B-208ENST00000456210 FAM9AQ8IZU1 332 aaPredicted RBP29.29■■■□□ 2.28
SEMA3B-208ENST00000456210 SMARCA4P51532 1647 aa29.27■■■□□ 2.28
SEMA3B-208ENST00000456210 WIZO95785 1651 aa29.26■■■□□ 2.27
SEMA3B-208ENST00000456210 DNAJC5BQ9UF47 199 aa29.21■■■□□ 2.27
SEMA3B-208ENST00000456210 ACIN1Q9UKV3 1341 aaKnown RBP29.17■■■□□ 2.26
SEMA3B-208ENST00000456210 CC2D2AQ9P2K1 1620 aa29.15■■■□□ 2.26
SEMA3B-208ENST00000456210 NEUROD1Q13562 356 aa29■■■□□ 2.23
SEMA3B-208ENST00000456210 ATAD2BQ9ULI0 1458 aa28.97■■■□□ 2.23
SEMA3B-208ENST00000456210 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.95■■■□□ 2.22
SEMA3B-208ENST00000456210 CCER1Q8TC90 406 aaPredicted RBP28.95■■■□□ 2.22
SEMA3B-208ENST00000456210 TOP2AP11388 1531 aaKnown RBP28.94■■■□□ 2.22
SEMA3B-208ENST00000456210 EHMT2Q96KQ7 1210 aa28.92■■■□□ 2.22
SEMA3B-208ENST00000456210 MYT1Q01538 1121 aa28.89■■■□□ 2.22
SEMA3B-208ENST00000456210 CENPBP07199 599 aaPredicted RBP28.88■■■□□ 2.21
SEMA3B-208ENST00000456210 WRNQ14191 1432 aaPredicted RBP eCLIP28.87■■■□□ 2.21
SEMA3B-208ENST00000456210 SMARCA2P51531 1590 aa28.86■■■□□ 2.21
SEMA3B-208ENST00000456210 PEG3Q9GZU2 1588 aa28.86■■■□□ 2.21
SEMA3B-208ENST00000456210 DIEXFQ68CQ4 756 aaKnown RBP28.85■■■□□ 2.21
SEMA3B-208ENST00000456210 NCAPD3P42695 1498 aa28.78■■■□□ 2.2
SEMA3B-208ENST00000456210 GTF3C3Q9Y5Q9 886 aa28.78■■■□□ 2.2
SEMA3B-208ENST00000456210 BAZ1BQ9UIG0 1483 aaKnown RBP28.77■■■□□ 2.2
SEMA3B-208ENST00000456210 CCDC88BA6NC98 1476 aa28.67■■■□□ 2.18
SEMA3B-208ENST00000456210 HMGXB3Q12766 1538 aa28.66■■■□□ 2.18
SEMA3B-208ENST00000456210 CEP162Q5TB80 1403 aa28.59■■■□□ 2.17
SEMA3B-208ENST00000456210 TNIKQ9UKE5 1360 aa28.52■■■□□ 2.16
SEMA3B-208ENST00000456210 ABCC8Q09428 1581 aa28.49■■■□□ 2.15
SEMA3B-208ENST00000456210 ZNF316A6NFI3 1004 aaPredicted RBP28.47■■■□□ 2.15
SEMA3B-208ENST00000456210 EEA1Q15075 1411 aa28.45■■■□□ 2.14
SEMA3B-208ENST00000456210 SOGA1O94964 1423 aa28.32■■■□□ 2.12
SEMA3B-208ENST00000456210 GOLGA3Q08378 1498 aa28.25■■■□□ 2.11
SEMA3B-208ENST00000456210 TTBK1Q5TCY1 1321 aaPredicted RBP28.23■■■□□ 2.11
SEMA3B-208ENST00000456210 CSRNP3Q8WYN3 585 aa28.19■■■□□ 2.1
SEMA3B-208ENST00000456210 NESP48681 1621 aa28.16■■■□□ 2.1
SEMA3B-208ENST00000456210 RUSC2Q8N2Y8 1516 aa28.15■■■□□ 2.1
SEMA3B-208ENST00000456210 MIER1Q8N108 512 aa28.11■■■□□ 2.09
SEMA3B-208ENST00000456210 YTHDC1Q96MU7 727 aaKnown RBP28.08■■■□□ 2.09
SEMA3B-208ENST00000456210 KIF21BO75037 1637 aa28.08■■■□□ 2.09
SEMA3B-208ENST00000456210 UBTFP17480 764 aaKnown RBP28.06■■■□□ 2.08
SEMA3B-208ENST00000456210 CADPSQ9ULU8 1353 aa28.03■■■□□ 2.08
SEMA3B-208ENST00000456210 CEP164Q9UPV0 1460 aa28.01■■■□□ 2.07
SEMA3B-208ENST00000456210 CFTRP13569 1480 aa27.98■■■□□ 2.07
SEMA3B-208ENST00000456210 VPS8Q8N3P4 1428 aa27.92■■■□□ 2.06
SEMA3B-208ENST00000456210 LAMC3Q9Y6N6 1575 aa27.92■■■□□ 2.06
SEMA3B-208ENST00000456210 CLSPNQ9HAW4 1339 aa27.91■■■□□ 2.06
SEMA3B-208ENST00000456210 CLIP1P30622 1438 aa27.88■■■□□ 2.05
SEMA3B-208ENST00000456210 HNRNPUL2Q1KMD3 747 aaKnown RBP27.87■■■□□ 2.05
SEMA3B-208ENST00000456210 SYNJ1O43426 1573 aa27.86■■■□□ 2.05
SEMA3B-208ENST00000456210 PRDM2Q13029 1718 aa27.79■■■□□ 2.04
SEMA3B-208ENST00000456210 KIF21AQ7Z4S6 1674 aa27.78■■■□□ 2.04
SEMA3B-208ENST00000456210 FANCD2Q9BXW9 1451 aa27.75■■■□□ 2.03
SEMA3B-208ENST00000456210 PDS5BQ9NTI5 1447 aa27.72■■■□□ 2.03
SEMA3B-208ENST00000456210 TOP2BQ02880 1626 aa27.7■■■□□ 2.03
SEMA3B-208ENST00000456210 ERCC6Q03468 1493 aa27.7■■■□□ 2.02
SEMA3B-208ENST00000456210 BIVM-ERCC5R4GMW8 1640 aa27.66■■■□□ 2.02
SEMA3B-208ENST00000456210 RAPGEF2Q9Y4G8 1499 aa27.64■■■□□ 2.01
SEMA3B-208ENST00000456210 APLP2Q06481 763 aa27.63■■■□□ 2.01
SEMA3B-208ENST00000456210 DHX57Q6P158 1386 aaKnown RBP27.62■■■□□ 2.01
SEMA3B-208ENST00000456210 SUPT16HQ9Y5B9 1047 aaKnown RBP27.6■■■□□ 2.01
SEMA3B-208ENST00000456210 CUX1P39880 1505 aa27.52■■■□□ 2
SEMA3B-208ENST00000456210 ERICH3Q5RHP9 1530 aa27.48■■□□□ 1.99
SEMA3B-208ENST00000456210 URB2Q14146 1524 aaKnown RBP27.47■■□□□ 1.99
SEMA3B-208ENST00000456210 CUX2O14529 1486 aa27.46■■□□□ 1.99
SEMA3B-208ENST00000456210 THOC2Q8NI27 1593 aaKnown RBP27.43■■□□□ 1.98
SEMA3B-208ENST00000456210 MRC2Q9UBG0 1479 aa27.42■■□□□ 1.98
SEMA3B-208ENST00000456210 ARAP1Q96P48 1450 aa27.42■■□□□ 1.98
SEMA3B-208ENST00000456210 RRBP1Q9P2E9 1410 aaKnown RBP27.42■■□□□ 1.98
SEMA3B-208ENST00000456210 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
SEMA3B-208ENST00000456210 TSHZ2Q9NRE2 1034 aa27.36■■□□□ 1.97
SEMA3B-208ENST00000456210 PRXQ9BXM0 1461 aa27.35■■□□□ 1.97
SEMA3B-208ENST00000456210 DNMBPQ6XZF7 1577 aa27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms