RNA–Protein interactions for RNA: ENST00000454350.5

UBE2D4-208, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 2

Gene UBE2D4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-208ENST00000454350 NISCHQ9Y2I1 1504 aa46.43■■■■■ 5.02
UBE2D4-208ENST00000454350 CCDC180Q9P1Z9 1646 aa41.61■■■■■ 4.25
UBE2D4-208ENST00000454350 ABCC9O60706 1549 aa41.28■■■■■ 4.2
UBE2D4-208ENST00000454350 RB1CC1Q8TDY2 1594 aa39.42■■■■□ 3.9
UBE2D4-208ENST00000454350 NACADO15069 1562 aa39.23■■■■□ 3.87
UBE2D4-208ENST00000454350 DCAF8L2P0C7V8 631 aa38.88■■■■□ 3.81
UBE2D4-208ENST00000454350 MYO15BQ96JP2 1530 aa38.79■■■■□ 3.8
UBE2D4-208ENST00000454350 UNC13AQ9UPW8 1703 aa38.72■■■■□ 3.79
UBE2D4-208ENST00000454350 DNAJC5BQ9UF47 199 aa38.6■■■■□ 3.77
UBE2D4-208ENST00000454350 ZCCHC6Q5VYS8 1495 aaKnown RBP38.54■■■■□ 3.76
UBE2D4-208ENST00000454350 PABPN1Q86U42 306 aaKnown RBP eCLIP38.44■■■■□ 3.74
UBE2D4-208ENST00000454350 DCAF1Q9Y4B6 1507 aa38.39■■■■□ 3.74
UBE2D4-208ENST00000454350 BICRAQ9NZM4 1560 aa38.38■■■■□ 3.73
UBE2D4-208ENST00000454350 SCRIBQ14160 1630 aa37.87■■■■□ 3.65
UBE2D4-208ENST00000454350 SHROOM4Q9ULL8 1493 aa37.77■■■■□ 3.64
UBE2D4-208ENST00000454350 CC2D2AQ9P2K1 1620 aa37.37■■■■□ 3.57
UBE2D4-208ENST00000454350 EIF4G1Q04637 1599 aaKnown RBP37.34■■■■□ 3.57
UBE2D4-208ENST00000454350 CECR2Q9BXF3 1484 aa37.16■■■■□ 3.54
UBE2D4-208ENST00000454350 NCAPD3P42695 1498 aa36.22■■■■□ 3.39
UBE2D4-208ENST00000454350 SMARCA4P51532 1647 aa36.19■■■■□ 3.38
UBE2D4-208ENST00000454350 ATAD2BQ9ULI0 1458 aa36.14■■■■□ 3.38
UBE2D4-208ENST00000454350 SMARCA2P51531 1590 aa36.02■■■■□ 3.36
UBE2D4-208ENST00000454350 BAZ1AQ9NRL2 1556 aaPredicted RBP35.99■■■■□ 3.35
UBE2D4-208ENST00000454350 HMGXB3Q12766 1538 aa35.98■■■■□ 3.35
UBE2D4-208ENST00000454350 PEG3Q9GZU2 1588 aa35.87■■■■□ 3.33
UBE2D4-208ENST00000454350 MROH2BQ7Z745 1585 aa35.8■■■■□ 3.32
UBE2D4-208ENST00000454350 BAZ1BQ9UIG0 1483 aaKnown RBP35.74■■■■□ 3.31
UBE2D4-208ENST00000454350 NESP48681 1621 aa35.58■■■■□ 3.29
UBE2D4-208ENST00000454350 ERCC6Q03468 1493 aa35.55■■■■□ 3.28
UBE2D4-208ENST00000454350 CUX2O14529 1486 aa35.49■■■■□ 3.27
UBE2D4-208ENST00000454350 WIZO95785 1651 aa35.4■■■■□ 3.26
UBE2D4-208ENST00000454350 LAMC3Q9Y6N6 1575 aa35.36■■■■□ 3.25
UBE2D4-208ENST00000454350 THOC2Q8NI27 1593 aaKnown RBP35.22■■■■□ 3.23
UBE2D4-208ENST00000454350 DNAJC5Q9H3Z4 198 aa35.21■■■■□ 3.23
UBE2D4-208ENST00000454350 KIF21AQ7Z4S6 1674 aa35.19■■■■□ 3.22
UBE2D4-208ENST00000454350 RSF1Q96T23 1441 aaPredicted RBP35.1■■■■□ 3.21
UBE2D4-208ENST00000454350 CADPSQ9ULU8 1353 aa35.08■■■■□ 3.21
UBE2D4-208ENST00000454350 PDS5BQ9NTI5 1447 aa35.06■■■■□ 3.2
UBE2D4-208ENST00000454350 TOP2AP11388 1531 aaKnown RBP34.92■■■■□ 3.18
UBE2D4-208ENST00000454350 MRC2Q9UBG0 1479 aa34.79■■■■□ 3.16
UBE2D4-208ENST00000454350 CFTRP13569 1480 aa34.77■■■■□ 3.16
UBE2D4-208ENST00000454350 WDR62O43379 1518 aa34.76■■■■□ 3.15
UBE2D4-208ENST00000454350 FANCD2Q9BXW9 1451 aa34.69■■■■□ 3.14
UBE2D4-208ENST00000454350 CEP164Q9UPV0 1460 aa34.69■■■■□ 3.14
UBE2D4-208ENST00000454350 PRDM2Q13029 1718 aa34.55■■■■□ 3.12
UBE2D4-208ENST00000454350 CCDC88BA6NC98 1476 aa34.52■■■■□ 3.12
UBE2D4-208ENST00000454350 URB2Q14146 1524 aaKnown RBP34.45■■■■□ 3.1
UBE2D4-208ENST00000454350 TOPBP1Q92547 1522 aa34.09■■■■□ 3.05
UBE2D4-208ENST00000454350 IFT140Q96RY7 1462 aa33.99■■■■□ 3.03
UBE2D4-208ENST00000454350 DNMBPQ6XZF7 1577 aa33.98■■■■□ 3.03
UBE2D4-208ENST00000454350 ABCC8Q09428 1581 aa33.98■■■■□ 3.03
UBE2D4-208ENST00000454350 ZNF608Q9ULD9 1512 aaPredicted RBP33.97■■■■□ 3.03
UBE2D4-208ENST00000454350 TARBP1Q13395 1621 aaKnown RBP33.84■■■■□ 3.01
UBE2D4-208ENST00000454350 OSCARQ8IYS5 282 aa33.84■■■■□ 3.01
UBE2D4-208ENST00000454350 EIF4G3O43432 1585 aaKnown RBP33.81■■■■□ 3
UBE2D4-208ENST00000454350 POLA1P09884 1462 aaPredicted RBP33.76■■■□□ 2.99
UBE2D4-208ENST00000454350 TRIM41Q8WV44 630 aa33.66■■■□□ 2.98
UBE2D4-208ENST00000454350 AQRO60306 1485 aaKnown RBP eCLIP33.65■■■□□ 2.98
UBE2D4-208ENST00000454350 CUX1P39880 1505 aa33.62■■■□□ 2.97
UBE2D4-208ENST00000454350 RAD54L2Q9Y4B4 1467 aa33.62■■■□□ 2.97
UBE2D4-208ENST00000454350 SUPT5HO00267 1087 aaKnown RBP33.58■■■□□ 2.97
UBE2D4-208ENST00000454350 CHD1O14646 1710 aa33.56■■■□□ 2.96
UBE2D4-208ENST00000454350 FGD5Q6ZNL6 1462 aa33.56■■■□□ 2.96
UBE2D4-208ENST00000454350 SOGA1O94964 1423 aa33.55■■■□□ 2.96
UBE2D4-208ENST00000454350 RIMBP3CA6NJZ7 1639 aa33.5■■■□□ 2.95
UBE2D4-208ENST00000454350 RIMBP3BA6NNM3 1639 aa33.5■■■□□ 2.95
UBE2D4-208ENST00000454350 RIMBP3Q9UFD9 1639 aa33.5■■■□□ 2.95
UBE2D4-208ENST00000454350 TDRD9Q8NDG6 1382 aaKnown RBP33.46■■■□□ 2.95
UBE2D4-208ENST00000454350 WDR97A6NE52 1622 aa33.45■■■□□ 2.95
UBE2D4-208ENST00000454350 ARHGEF11O15085 1522 aa33.39■■■□□ 2.94
UBE2D4-208ENST00000454350 SNAPC4Q5SXM2 1469 aa33.31■■■□□ 2.92
UBE2D4-208ENST00000454350 FBLN2P98095 1184 aa33.25■■■□□ 2.91
UBE2D4-208ENST00000454350 GRIN2BQ13224 1484 aa33.25■■■□□ 2.91
UBE2D4-208ENST00000454350 MAGI1Q96QZ7 1491 aaPredicted RBP33.24■■■□□ 2.91
UBE2D4-208ENST00000454350 PBRM1Q86U86 1689 aa33.23■■■□□ 2.91
UBE2D4-208ENST00000454350 ABCA10Q8WWZ4 1543 aa33.21■■■□□ 2.91
UBE2D4-208ENST00000454350 ABCA5Q8WWZ7 1642 aa33.19■■■□□ 2.9
UBE2D4-208ENST00000454350 BIVM-ERCC5R4GMW8 1640 aa33.17■■■□□ 2.9
UBE2D4-208ENST00000454350 GAPVD1Q14C86 1478 aa33.16■■■□□ 2.9
UBE2D4-208ENST00000454350 CLASP1Q7Z460 1538 aa33.15■■■□□ 2.9
UBE2D4-208ENST00000454350 TOP2BQ02880 1626 aa33.13■■■□□ 2.89
UBE2D4-208ENST00000454350 SYNJ2O15056 1496 aa33.12■■■□□ 2.89
UBE2D4-208ENST00000454350 SYNJ1O43426 1573 aa33.11■■■□□ 2.89
UBE2D4-208ENST00000454350 ARAP1Q96P48 1450 aa33.09■■■□□ 2.89
UBE2D4-208ENST00000454350 CHMP7Q8WUX9 453 aaPredicted RBP33.07■■■□□ 2.88
UBE2D4-208ENST00000454350 WRNQ14191 1432 aaPredicted RBP eCLIP33.06■■■□□ 2.88
UBE2D4-208ENST00000454350 CYB5RLQ6IPT4 315 aa33.04■■■□□ 2.88
UBE2D4-208ENST00000454350 ADAMTS12P58397 1594 aa32.89■■■□□ 2.86
UBE2D4-208ENST00000454350 GRIN2AQ12879 1464 aa32.85■■■□□ 2.85
UBE2D4-208ENST00000454350 ERICH3Q5RHP9 1530 aa32.79■■■□□ 2.84
UBE2D4-208ENST00000454350 CEP170Q5SW79 1584 aa32.77■■■□□ 2.84
UBE2D4-208ENST00000454350 NUP160Q12769 1436 aa32.75■■■□□ 2.83
UBE2D4-208ENST00000454350 FHAD1B1AJZ9 1412 aa32.74■■■□□ 2.83
UBE2D4-208ENST00000454350 ERCC6L2Q5T890 1561 aa32.66■■■□□ 2.82
UBE2D4-208ENST00000454350 SHROOM2Q13796 1616 aa32.64■■■□□ 2.82
UBE2D4-208ENST00000454350 TRHP20396 242 aaPredicted RBP32.51■■■□□ 2.79
UBE2D4-208ENST00000454350 RUSC2Q8N2Y8 1516 aa32.43■■■□□ 2.78
UBE2D4-208ENST00000454350 IGF1RP08069 1367 aa32.42■■■□□ 2.78
UBE2D4-208ENST00000454350 KIF27Q86VH2 1401 aa32.39■■■□□ 2.78
UBE2D4-208ENST00000454350 CUL7Q14999 1698 aa32.37■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms