RNA–Protein interactions for RNA: ENST00000453030.5

GARNL3-210, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 536 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-210ENST00000453030 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.3
GARNL3-210ENST00000453030 CCDC180Q9P1Z9 1646 aa26.53■■□□□ 1.84
GARNL3-210ENST00000453030 ABCC9O60706 1549 aa26.52■■□□□ 1.84
GARNL3-210ENST00000453030 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
GARNL3-210ENST00000453030 NACADO15069 1562 aa25.01■■□□□ 1.59
GARNL3-210ENST00000453030 DCAF8L2P0C7V8 631 aa24.83■■□□□ 1.57
GARNL3-210ENST00000453030 DNAJC5BQ9UF47 199 aa24.81■■□□□ 1.56
GARNL3-210ENST00000453030 UNC13AQ9UPW8 1703 aa24.8■■□□□ 1.56
GARNL3-210ENST00000453030 PABPN1Q86U42 306 aaKnown RBP eCLIP24.62■■□□□ 1.53
GARNL3-210ENST00000453030 MYO15BQ96JP2 1530 aa24.61■■□□□ 1.53
GARNL3-210ENST00000453030 BICRAQ9NZM4 1560 aa24.5■■□□□ 1.51
GARNL3-210ENST00000453030 ZCCHC6Q5VYS8 1495 aaKnown RBP24.43■■□□□ 1.5
GARNL3-210ENST00000453030 DCAF1Q9Y4B6 1507 aa24.3■■□□□ 1.48
GARNL3-210ENST00000453030 SCRIBQ14160 1630 aa24.2■■□□□ 1.46
GARNL3-210ENST00000453030 SHROOM4Q9ULL8 1493 aa24.12■■□□□ 1.45
GARNL3-210ENST00000453030 CC2D2AQ9P2K1 1620 aa23.98■■□□□ 1.43
GARNL3-210ENST00000453030 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
GARNL3-210ENST00000453030 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
GARNL3-210ENST00000453030 SMARCA4P51532 1647 aa23.04■■□□□ 1.28
GARNL3-210ENST00000453030 NCAPD3P42695 1498 aa23.04■■□□□ 1.28
GARNL3-210ENST00000453030 ATAD2BQ9ULI0 1458 aa23■■□□□ 1.27
GARNL3-210ENST00000453030 SMARCA2P51531 1590 aa22.97■■□□□ 1.27
GARNL3-210ENST00000453030 HMGXB3Q12766 1538 aa22.94■■□□□ 1.26
GARNL3-210ENST00000453030 ERCC6Q03468 1493 aa22.91■■□□□ 1.26
GARNL3-210ENST00000453030 BAZ1AQ9NRL2 1556 aaPredicted RBP22.89■■□□□ 1.25
GARNL3-210ENST00000453030 CUX2O14529 1486 aa22.84■■□□□ 1.25
GARNL3-210ENST00000453030 BAZ1BQ9UIG0 1483 aaKnown RBP22.81■■□□□ 1.24
GARNL3-210ENST00000453030 DNAJC5Q9H3Z4 198 aa22.78■■□□□ 1.24
GARNL3-210ENST00000453030 NESP48681 1621 aa22.78■■□□□ 1.24
GARNL3-210ENST00000453030 PEG3Q9GZU2 1588 aa22.76■■□□□ 1.23
GARNL3-210ENST00000453030 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
GARNL3-210ENST00000453030 LAMC3Q9Y6N6 1575 aa22.61■■□□□ 1.21
GARNL3-210ENST00000453030 THOC2Q8NI27 1593 aaKnown RBP22.6■■□□□ 1.21
GARNL3-210ENST00000453030 KIF21AQ7Z4S6 1674 aa22.58■■□□□ 1.2
GARNL3-210ENST00000453030 WIZO95785 1651 aa22.5■■□□□ 1.19
GARNL3-210ENST00000453030 PDS5BQ9NTI5 1447 aa22.41■■□□□ 1.18
GARNL3-210ENST00000453030 CADPSQ9ULU8 1353 aa22.34■■□□□ 1.17
GARNL3-210ENST00000453030 MRC2Q9UBG0 1479 aa22.28■■□□□ 1.16
GARNL3-210ENST00000453030 WDR62O43379 1518 aa22.24■■□□□ 1.15
GARNL3-210ENST00000453030 CEP164Q9UPV0 1460 aa22.19■■□□□ 1.14
GARNL3-210ENST00000453030 RSF1Q96T23 1441 aaPredicted RBP22.18■■□□□ 1.14
GARNL3-210ENST00000453030 TOP2AP11388 1531 aaKnown RBP22.17■■□□□ 1.14
GARNL3-210ENST00000453030 FANCD2Q9BXW9 1451 aa22.14■■□□□ 1.13
GARNL3-210ENST00000453030 CFTRP13569 1480 aa22.09■■□□□ 1.13
GARNL3-210ENST00000453030 PRDM2Q13029 1718 aa22.07■■□□□ 1.12
GARNL3-210ENST00000453030 URB2Q14146 1524 aaKnown RBP21.97■■□□□ 1.11
GARNL3-210ENST00000453030 CCDC88BA6NC98 1476 aa21.87■■□□□ 1.09
GARNL3-210ENST00000453030 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
GARNL3-210ENST00000453030 TOPBP1Q92547 1522 aa21.73■■□□□ 1.07
GARNL3-210ENST00000453030 IFT140Q96RY7 1462 aa21.71■■□□□ 1.07
GARNL3-210ENST00000453030 ZNF608Q9ULD9 1512 aaPredicted RBP21.71■■□□□ 1.07
GARNL3-210ENST00000453030 OSCARQ8IYS5 282 aa21.71■■□□□ 1.07
GARNL3-210ENST00000453030 DNMBPQ6XZF7 1577 aa21.67■■□□□ 1.06
GARNL3-210ENST00000453030 EIF4G3O43432 1585 aaKnown RBP21.66■■□□□ 1.06
GARNL3-210ENST00000453030 ABCC8Q09428 1581 aa21.62■■□□□ 1.05
GARNL3-210ENST00000453030 RIMBP3CA6NJZ7 1639 aa21.59■■□□□ 1.05
GARNL3-210ENST00000453030 RIMBP3BA6NNM3 1639 aa21.59■■□□□ 1.05
GARNL3-210ENST00000453030 RIMBP3Q9UFD9 1639 aa21.59■■□□□ 1.05
GARNL3-210ENST00000453030 TARBP1Q13395 1621 aaKnown RBP21.57■■□□□ 1.04
GARNL3-210ENST00000453030 CHD1O14646 1710 aa21.55■■□□□ 1.04
GARNL3-210ENST00000453030 POLA1P09884 1462 aaPredicted RBP21.51■■□□□ 1.03
GARNL3-210ENST00000453030 AQRO60306 1485 aaKnown RBP eCLIP21.48■■□□□ 1.03
GARNL3-210ENST00000453030 ARHGEF11O15085 1522 aa21.48■■□□□ 1.03
GARNL3-210ENST00000453030 RAD54L2Q9Y4B4 1467 aa21.42■■□□□ 1.02
GARNL3-210ENST00000453030 FGD5Q6ZNL6 1462 aa21.38■■□□□ 1.01
GARNL3-210ENST00000453030 CUX1P39880 1505 aa21.35■■□□□ 1.01
GARNL3-210ENST00000453030 SOGA1O94964 1423 aa21.35■■□□□ 1.01
GARNL3-210ENST00000453030 WDR97A6NE52 1622 aa21.33■■□□□ 1.01
GARNL3-210ENST00000453030 FBLN2P98095 1184 aa21.33■■□□□ 1.01
GARNL3-210ENST00000453030 TDRD9Q8NDG6 1382 aaKnown RBP21.33■■□□□ 1
GARNL3-210ENST00000453030 SNAPC4Q5SXM2 1469 aa21.31■■□□□ 1
GARNL3-210ENST00000453030 ARAP1Q96P48 1450 aa21.26■□□□□ 0.99
GARNL3-210ENST00000453030 PBRM1Q86U86 1689 aa21.26■□□□□ 0.99
GARNL3-210ENST00000453030 CYB5RLQ6IPT4 315 aa21.24■□□□□ 0.99
GARNL3-210ENST00000453030 MAGI1Q96QZ7 1491 aaPredicted RBP21.22■□□□□ 0.99
GARNL3-210ENST00000453030 CLASP1Q7Z460 1538 aa21.21■□□□□ 0.99
GARNL3-210ENST00000453030 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
GARNL3-210ENST00000453030 SYNJ1O43426 1573 aa21.2■□□□□ 0.98
GARNL3-210ENST00000453030 SUPT5HO00267 1087 aaKnown RBP21.17■□□□□ 0.98
GARNL3-210ENST00000453030 ABCA5Q8WWZ7 1642 aa21.15■□□□□ 0.98
GARNL3-210ENST00000453030 SYNJ2O15056 1496 aa21.14■□□□□ 0.98
GARNL3-210ENST00000453030 CHMP7Q8WUX9 453 aaPredicted RBP21.14■□□□□ 0.97
GARNL3-210ENST00000453030 GAPVD1Q14C86 1478 aa21.13■□□□□ 0.97
GARNL3-210ENST00000453030 ABCA10Q8WWZ4 1543 aa21.1■□□□□ 0.97
GARNL3-210ENST00000453030 BIVM-ERCC5R4GMW8 1640 aa21.04■□□□□ 0.96
GARNL3-210ENST00000453030 TRHP20396 242 aaPredicted RBP21.04■□□□□ 0.96
GARNL3-210ENST00000453030 TOP2BQ02880 1626 aa21.01■□□□□ 0.95
GARNL3-210ENST00000453030 ADAMTS12P58397 1594 aa21■□□□□ 0.95
GARNL3-210ENST00000453030 WRNQ14191 1432 aaPredicted RBP eCLIP20.98■□□□□ 0.95
GARNL3-210ENST00000453030 GRIN2AQ12879 1464 aa20.95■□□□□ 0.94
GARNL3-210ENST00000453030 CEP170Q5SW79 1584 aa20.92■□□□□ 0.94
GARNL3-210ENST00000453030 ERCC6L2Q5T890 1561 aa20.9■□□□□ 0.94
GARNL3-210ENST00000453030 NUP160Q12769 1436 aa20.86■□□□□ 0.93
GARNL3-210ENST00000453030 ERICH3Q5RHP9 1530 aa20.84■□□□□ 0.93
GARNL3-210ENST00000453030 FHAD1B1AJZ9 1412 aa20.84■□□□□ 0.93
GARNL3-210ENST00000453030 SHROOM2Q13796 1616 aa20.83■□□□□ 0.93
GARNL3-210ENST00000453030 RUSC2Q8N2Y8 1516 aa20.71■□□□□ 0.91
GARNL3-210ENST00000453030 PRG4Q92954 1404 aaPredicted RBP20.65■□□□□ 0.9
GARNL3-210ENST00000453030 KIF13AQ9H1H9 1805 aa20.64■□□□□ 0.89
GARNL3-210ENST00000453030 CUL7Q14999 1698 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms