RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 NISCHQ9Y2I1 1504 aa23.87■■□□□ 1.41
USP54-207ENST00000451492 CCDC180Q9P1Z9 1646 aa21.39■■□□□ 1.01
USP54-207ENST00000451492 ABCC9O60706 1549 aa21.13■□□□□ 0.97
USP54-207ENST00000451492 RB1CC1Q8TDY2 1594 aa20.21■□□□□ 0.83
USP54-207ENST00000451492 DCAF8L2P0C7V8 631 aa20.09■□□□□ 0.81
USP54-207ENST00000451492 NACADO15069 1562 aa20.08■□□□□ 0.8
USP54-207ENST00000451492 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
USP54-207ENST00000451492 ZCCHC6Q5VYS8 1495 aaKnown RBP19.86■□□□□ 0.77
USP54-207ENST00000451492 MYO15BQ96JP2 1530 aa19.8■□□□□ 0.76
USP54-207ENST00000451492 DCAF1Q9Y4B6 1507 aa19.67■□□□□ 0.74
USP54-207ENST00000451492 PABPN1Q86U42 306 aaKnown RBP eCLIP19.67■□□□□ 0.74
USP54-207ENST00000451492 BICRAQ9NZM4 1560 aa19.61■□□□□ 0.73
USP54-207ENST00000451492 SCRIBQ14160 1630 aa19.58■□□□□ 0.73
USP54-207ENST00000451492 DNAJC5BQ9UF47 199 aa19.47■□□□□ 0.71
USP54-207ENST00000451492 SHROOM4Q9ULL8 1493 aa19.27■□□□□ 0.67
USP54-207ENST00000451492 CC2D2AQ9P2K1 1620 aa19.11■□□□□ 0.65
USP54-207ENST00000451492 EIF4G1Q04637 1599 aaKnown RBP19.11■□□□□ 0.65
USP54-207ENST00000451492 CECR2Q9BXF3 1484 aa18.96■□□□□ 0.63
USP54-207ENST00000451492 SMARCA4P51532 1647 aa18.64■□□□□ 0.57
USP54-207ENST00000451492 BAZ1AQ9NRL2 1556 aaPredicted RBP18.54■□□□□ 0.56
USP54-207ENST00000451492 ATAD2BQ9ULI0 1458 aa18.5■□□□□ 0.55
USP54-207ENST00000451492 SMARCA2P51531 1590 aa18.5■□□□□ 0.55
USP54-207ENST00000451492 NCAPD3P42695 1498 aa18.46■□□□□ 0.55
USP54-207ENST00000451492 HMGXB3Q12766 1538 aa18.44■□□□□ 0.54
USP54-207ENST00000451492 MROH2BQ7Z745 1585 aa18.44■□□□□ 0.54
USP54-207ENST00000451492 BAZ1BQ9UIG0 1483 aaKnown RBP18.39■□□□□ 0.54
USP54-207ENST00000451492 PEG3Q9GZU2 1588 aa18.37■□□□□ 0.53
USP54-207ENST00000451492 WIZO95785 1651 aa18.31■□□□□ 0.52
USP54-207ENST00000451492 NESP48681 1621 aa18.23■□□□□ 0.51
USP54-207ENST00000451492 ERCC6Q03468 1493 aa18.23■□□□□ 0.51
USP54-207ENST00000451492 LAMC3Q9Y6N6 1575 aa18.12■□□□□ 0.49
USP54-207ENST00000451492 KIF21AQ7Z4S6 1674 aa18.11■□□□□ 0.49
USP54-207ENST00000451492 RSF1Q96T23 1441 aaPredicted RBP18.09■□□□□ 0.49
USP54-207ENST00000451492 CUX2O14529 1486 aa18.03■□□□□ 0.48
USP54-207ENST00000451492 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
USP54-207ENST00000451492 THOC2Q8NI27 1593 aaKnown RBP18.02■□□□□ 0.48
USP54-207ENST00000451492 PDS5BQ9NTI5 1447 aa17.94■□□□□ 0.46
USP54-207ENST00000451492 CADPSQ9ULU8 1353 aa17.93■□□□□ 0.46
USP54-207ENST00000451492 PRDM2Q13029 1718 aa17.86■□□□□ 0.45
USP54-207ENST00000451492 MRC2Q9UBG0 1479 aa17.82■□□□□ 0.44
USP54-207ENST00000451492 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
USP54-207ENST00000451492 CFTRP13569 1480 aa17.81■□□□□ 0.44
USP54-207ENST00000451492 FANCD2Q9BXW9 1451 aa17.81■□□□□ 0.44
USP54-207ENST00000451492 CCDC88BA6NC98 1476 aa17.78■□□□□ 0.44
USP54-207ENST00000451492 WDR62O43379 1518 aa17.77■□□□□ 0.44
USP54-207ENST00000451492 URB2Q14146 1524 aaKnown RBP17.66■□□□□ 0.42
USP54-207ENST00000451492 DNAJC5Q9H3Z4 198 aa17.64■□□□□ 0.41
USP54-207ENST00000451492 SUPT5HO00267 1087 aaKnown RBP17.56■□□□□ 0.4
USP54-207ENST00000451492 TOPBP1Q92547 1522 aa17.5■□□□□ 0.39
USP54-207ENST00000451492 DNMBPQ6XZF7 1577 aa17.49■□□□□ 0.39
USP54-207ENST00000451492 ABCC8Q09428 1581 aa17.41■□□□□ 0.38
USP54-207ENST00000451492 IFT140Q96RY7 1462 aa17.41■□□□□ 0.38
USP54-207ENST00000451492 ZNF608Q9ULD9 1512 aaPredicted RBP17.4■□□□□ 0.38
USP54-207ENST00000451492 EIF4G3O43432 1585 aaKnown RBP17.4■□□□□ 0.38
USP54-207ENST00000451492 TARBP1Q13395 1621 aaKnown RBP17.36■□□□□ 0.37
USP54-207ENST00000451492 POLA1P09884 1462 aaPredicted RBP17.34■□□□□ 0.37
USP54-207ENST00000451492 CUX1P39880 1505 aa17.31■□□□□ 0.36
USP54-207ENST00000451492 RAD54L2Q9Y4B4 1467 aa17.3■□□□□ 0.36
USP54-207ENST00000451492 FGD5Q6ZNL6 1462 aa17.29■□□□□ 0.36
USP54-207ENST00000451492 CHD1O14646 1710 aa17.27■□□□□ 0.36
USP54-207ENST00000451492 AQRO60306 1485 aaKnown RBP eCLIP17.25■□□□□ 0.352e-6■■■□□ 15.2
USP54-207ENST00000451492 WDR97A6NE52 1622 aa17.24■□□□□ 0.35
USP54-207ENST00000451492 SOGA1O94964 1423 aa17.22■□□□□ 0.35
USP54-207ENST00000451492 OSCARQ8IYS5 282 aa17.19■□□□□ 0.34
USP54-207ENST00000451492 PBRM1Q86U86 1689 aa17.19■□□□□ 0.34
USP54-207ENST00000451492 TDRD9Q8NDG6 1382 aaKnown RBP17.18■□□□□ 0.34
USP54-207ENST00000451492 BIVM-ERCC5R4GMW8 1640 aa17.15■□□□□ 0.34
USP54-207ENST00000451492 SYNJ1O43426 1573 aa17.15■□□□□ 0.34
USP54-207ENST00000451492 SNAPC4Q5SXM2 1469 aa17.13■□□□□ 0.33
USP54-207ENST00000451492 TRIM41Q8WV44 630 aa17.13■□□□□ 0.33
USP54-207ENST00000451492 TOP2BQ02880 1626 aa17.12■□□□□ 0.33
USP54-207ENST00000451492 FBLN2P98095 1184 aa17.12■□□□□ 0.33
USP54-207ENST00000451492 RIMBP3CA6NJZ7 1639 aa17.11■□□□□ 0.33
USP54-207ENST00000451492 RIMBP3BA6NNM3 1639 aa17.11■□□□□ 0.33
USP54-207ENST00000451492 RIMBP3Q9UFD9 1639 aa17.11■□□□□ 0.33
USP54-207ENST00000451492 WRNQ14191 1432 aaPredicted RBP eCLIP17.09■□□□□ 0.33
USP54-207ENST00000451492 ABCA5Q8WWZ7 1642 aa17.09■□□□□ 0.33
USP54-207ENST00000451492 GRIN2BQ13224 1484 aa17.06■□□□□ 0.32
USP54-207ENST00000451492 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
USP54-207ENST00000451492 GAPVD1Q14C86 1478 aa17.05■□□□□ 0.32
USP54-207ENST00000451492 MAGI1Q96QZ7 1491 aaPredicted RBP17.04■□□□□ 0.32
USP54-207ENST00000451492 ARHGEF11O15085 1522 aa17.03■□□□□ 0.32
USP54-207ENST00000451492 SYNJ2O15056 1496 aa16.98■□□□□ 0.31
USP54-207ENST00000451492 CHMP7Q8WUX9 453 aaPredicted RBP16.97■□□□□ 0.31
USP54-207ENST00000451492 ADAMTS12P58397 1594 aa16.96■□□□□ 0.31
USP54-207ENST00000451492 CLASP1Q7Z460 1538 aa16.95■□□□□ 0.3
USP54-207ENST00000451492 ARAP1Q96P48 1450 aa16.87■□□□□ 0.29
USP54-207ENST00000451492 GRIN2AQ12879 1464 aa16.86■□□□□ 0.29
USP54-207ENST00000451492 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
USP54-207ENST00000451492 CEP170Q5SW79 1584 aa16.85■□□□□ 0.29
USP54-207ENST00000451492 CYB5RLQ6IPT4 315 aa16.83■□□□□ 0.28
USP54-207ENST00000451492 FHAD1B1AJZ9 1412 aa16.81■□□□□ 0.28
USP54-207ENST00000451492 ERCC6L2Q5T890 1561 aa16.76■□□□□ 0.27
USP54-207ENST00000451492 NUP160Q12769 1436 aa16.75■□□□□ 0.27
USP54-207ENST00000451492 CUL7Q14999 1698 aa16.75■□□□□ 0.27
USP54-207ENST00000451492 KIF27Q86VH2 1401 aa16.72■□□□□ 0.27
USP54-207ENST00000451492 RUSC2Q8N2Y8 1516 aa16.72■□□□□ 0.27
USP54-207ENST00000451492 SHROOM2Q13796 1616 aa16.72■□□□□ 0.27
USP54-207ENST00000451492 IGF1RP08069 1367 aa16.64■□□□□ 0.25
USP54-207ENST00000451492 TRHP20396 242 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms