RNA–Protein interactions for RNA: ENST00000449537.1

AC004540.1-204, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 727 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-204ENST00000449537 NISCHQ9Y2I1 1504 aa32.55■■■□□ 2.8
AC004540.1-204ENST00000449537 ABCC9O60706 1549 aa30.57■■■□□ 2.48
AC004540.1-204ENST00000449537 DNAJC5BQ9UF47 199 aa29.59■■■□□ 2.33
AC004540.1-204ENST00000449537 CCDC180Q9P1Z9 1646 aa29.53■■■□□ 2.32
AC004540.1-204ENST00000449537 RB1CC1Q8TDY2 1594 aa28.64■■■□□ 2.18
AC004540.1-204ENST00000449537 PABPN1Q86U42 306 aaKnown RBP eCLIP28.39■■■□□ 2.14
AC004540.1-204ENST00000449537 NACADO15069 1562 aa28.22■■■□□ 2.11
AC004540.1-204ENST00000449537 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
AC004540.1-204ENST00000449537 UNC13AQ9UPW8 1703 aa27.9■■■□□ 2.06
AC004540.1-204ENST00000449537 DNAJC5Q9H3Z4 198 aa27.89■■■□□ 2.06
AC004540.1-204ENST00000449537 BICRAQ9NZM4 1560 aa27.81■■■□□ 2.04
AC004540.1-204ENST00000449537 CECR2Q9BXF3 1484 aa27.64■■■□□ 2.01
AC004540.1-204ENST00000449537 CC2D2AQ9P2K1 1620 aa27.52■■■□□ 2
AC004540.1-204ENST00000449537 MYO15BQ96JP2 1530 aa27.51■■□□□ 1.99
AC004540.1-204ENST00000449537 SHROOM4Q9ULL8 1493 aa27.33■■□□□ 1.97
AC004540.1-204ENST00000449537 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
AC004540.1-204ENST00000449537 SCRIBQ14160 1630 aa26.89■■□□□ 1.9
AC004540.1-204ENST00000449537 DCAF1Q9Y4B6 1507 aa26.8■■□□□ 1.88
AC004540.1-204ENST00000449537 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
AC004540.1-204ENST00000449537 CUX2O14529 1486 aa26.71■■□□□ 1.87
AC004540.1-204ENST00000449537 ERCC6Q03468 1493 aa26.47■■□□□ 1.83
AC004540.1-204ENST00000449537 TRIM41Q8WV44 630 aa26.29■■□□□ 1.8
AC004540.1-204ENST00000449537 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
AC004540.1-204ENST00000449537 NESP48681 1621 aa25.96■■□□□ 1.75
AC004540.1-204ENST00000449537 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
AC004540.1-204ENST00000449537 THOC2Q8NI27 1593 aaKnown RBP25.8■■□□□ 1.72
AC004540.1-204ENST00000449537 HMGXB3Q12766 1538 aa25.74■■□□□ 1.71
AC004540.1-204ENST00000449537 SMARCA2P51531 1590 aa25.73■■□□□ 1.71
AC004540.1-204ENST00000449537 LAMC3Q9Y6N6 1575 aa25.61■■□□□ 1.69
AC004540.1-204ENST00000449537 PDS5BQ9NTI5 1447 aa25.58■■□□□ 1.69
AC004540.1-204ENST00000449537 BAZ1BQ9UIG0 1483 aaKnown RBP25.57■■□□□ 1.68
AC004540.1-204ENST00000449537 SMARCA4P51532 1647 aa25.55■■□□□ 1.68
AC004540.1-204ENST00000449537 KIF21AQ7Z4S6 1674 aa25.52■■□□□ 1.68
AC004540.1-204ENST00000449537 OSCARQ8IYS5 282 aa25.48■■□□□ 1.67
AC004540.1-204ENST00000449537 BAZ1AQ9NRL2 1556 aaPredicted RBP25.35■■□□□ 1.65
AC004540.1-204ENST00000449537 MRC2Q9UBG0 1479 aa25.35■■□□□ 1.65
AC004540.1-204ENST00000449537 PEG3Q9GZU2 1588 aa25.3■■□□□ 1.64
AC004540.1-204ENST00000449537 CADPSQ9ULU8 1353 aa25.3■■□□□ 1.64
AC004540.1-204ENST00000449537 WDR62O43379 1518 aa25.28■■□□□ 1.64
AC004540.1-204ENST00000449537 RIMBP3CA6NJZ7 1639 aa25.08■■□□□ 1.6
AC004540.1-204ENST00000449537 RIMBP3BA6NNM3 1639 aa25.08■■□□□ 1.6
AC004540.1-204ENST00000449537 RIMBP3Q9UFD9 1639 aa25.08■■□□□ 1.6
AC004540.1-204ENST00000449537 CEP164Q9UPV0 1460 aa25.07■■□□□ 1.6
AC004540.1-204ENST00000449537 MROH2BQ7Z745 1585 aa25.06■■□□□ 1.6
AC004540.1-204ENST00000449537 TRHP20396 242 aaPredicted RBP24.99■■□□□ 1.59
AC004540.1-204ENST00000449537 AEBP2Q6ZN18 517 aaPredicted RBP24.98■■□□□ 1.59
AC004540.1-204ENST00000449537 FANCD2Q9BXW9 1451 aa24.96■■□□□ 1.59
AC004540.1-204ENST00000449537 CYB5RLQ6IPT4 315 aa24.95■■□□□ 1.58
AC004540.1-204ENST00000449537 ARHGEF11O15085 1522 aa24.91■■□□□ 1.58
AC004540.1-204ENST00000449537 URB2Q14146 1524 aaKnown RBP24.79■■□□□ 1.56
AC004540.1-204ENST00000449537 CFTRP13569 1480 aa24.76■■□□□ 1.55
AC004540.1-204ENST00000449537 WIZO95785 1651 aa24.69■■□□□ 1.54
AC004540.1-204ENST00000449537 ZNF608Q9ULD9 1512 aaPredicted RBP24.66■■□□□ 1.54
AC004540.1-204ENST00000449537 IFT140Q96RY7 1462 aa24.62■■□□□ 1.53
AC004540.1-204ENST00000449537 ARAP1Q96P48 1450 aa24.6■■□□□ 1.53
AC004540.1-204ENST00000449537 FBLN2P98095 1184 aa24.49■■□□□ 1.51
AC004540.1-204ENST00000449537 RSF1Q96T23 1441 aaPredicted RBP24.47■■□□□ 1.51
AC004540.1-204ENST00000449537 CHD1O14646 1710 aa24.41■■□□□ 1.5
AC004540.1-204ENST00000449537 EIF4G3O43432 1585 aaKnown RBP24.4■■□□□ 1.5
AC004540.1-204ENST00000449537 TOPBP1Q92547 1522 aa24.38■■□□□ 1.49
AC004540.1-204ENST00000449537 AQRO60306 1485 aaKnown RBP eCLIP24.37■■□□□ 1.49
AC004540.1-204ENST00000449537 ABCC8Q09428 1581 aa24.31■■□□□ 1.48
AC004540.1-204ENST00000449537 PRDM2Q13029 1718 aa24.31■■□□□ 1.48
AC004540.1-204ENST00000449537 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
AC004540.1-204ENST00000449537 TARBP1Q13395 1621 aaKnown RBP24.19■■□□□ 1.46
AC004540.1-204ENST00000449537 DNMBPQ6XZF7 1577 aa24.17■■□□□ 1.46
AC004540.1-204ENST00000449537 CHMP7Q8WUX9 453 aaPredicted RBP24.15■■□□□ 1.46
AC004540.1-204ENST00000449537 CCDC88BA6NC98 1476 aa24.12■■□□□ 1.45
AC004540.1-204ENST00000449537 CLASP1Q7Z460 1538 aa24.11■■□□□ 1.45
AC004540.1-204ENST00000449537 TDRD9Q8NDG6 1382 aaKnown RBP24.09■■□□□ 1.45
AC004540.1-204ENST00000449537 POLA1P09884 1462 aaPredicted RBP24.06■■□□□ 1.44
AC004540.1-204ENST00000449537 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
AC004540.1-204ENST00000449537 SNAPC4Q5SXM2 1469 aa24.03■■□□□ 1.44
AC004540.1-204ENST00000449537 RAD54L2Q9Y4B4 1467 aa24.02■■□□□ 1.44
AC004540.1-204ENST00000449537 SOGA1O94964 1423 aa24.01■■□□□ 1.43
AC004540.1-204ENST00000449537 GAPVD1Q14C86 1478 aa24■■□□□ 1.43
AC004540.1-204ENST00000449537 ILDR1Q86SU0 546 aaPredicted RBP23.98■■□□□ 1.43
AC004540.1-204ENST00000449537 MAGI1Q96QZ7 1491 aaPredicted RBP23.94■■□□□ 1.42
AC004540.1-204ENST00000449537 SYNJ2O15056 1496 aa23.88■■□□□ 1.41
AC004540.1-204ENST00000449537 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
AC004540.1-204ENST00000449537 WDR97A6NE52 1622 aa23.86■■□□□ 1.41
AC004540.1-204ENST00000449537 FGD5Q6ZNL6 1462 aa23.78■■□□□ 1.4
AC004540.1-204ENST00000449537 KDM4FA0A1W2PPD8 638 aa23.7■■□□□ 1.38
AC004540.1-204ENST00000449537 ERCC6L2Q5T890 1561 aa23.69■■□□□ 1.38
AC004540.1-204ENST00000449537 KIF13AQ9H1H9 1805 aa23.65■■□□□ 1.38
AC004540.1-204ENST00000449537 FAM69CQ0P6D2 419 aa23.61■■□□□ 1.37
AC004540.1-204ENST00000449537 PBRM1Q86U86 1689 aa23.6■■□□□ 1.37
AC004540.1-204ENST00000449537 CUX1P39880 1505 aa23.59■■□□□ 1.37
AC004540.1-204ENST00000449537 CEP170Q5SW79 1584 aa23.57■■□□□ 1.36
AC004540.1-204ENST00000449537 GRIN2AQ12879 1464 aa23.53■■□□□ 1.36
AC004540.1-204ENST00000449537 NPM1P06748 294 aaKnown RBP eCLIP23.51■■□□□ 1.35
AC004540.1-204ENST00000449537 NUP160Q12769 1436 aa23.49■■□□□ 1.35
AC004540.1-204ENST00000449537 ABCC10Q5T3U5 1492 aa23.49■■□□□ 1.35
AC004540.1-204ENST00000449537 ABCA10Q8WWZ4 1543 aa23.46■■□□□ 1.35
AC004540.1-204ENST00000449537 SHROOM2Q13796 1616 aa23.44■■□□□ 1.34
AC004540.1-204ENST00000449537 ABCA5Q8WWZ7 1642 aa23.44■■□□□ 1.34
AC004540.1-204ENST00000449537 KDM6BO15054 1643 aa23.41■■□□□ 1.34
AC004540.1-204ENST00000449537 PRG4Q92954 1404 aaPredicted RBP23.4■■□□□ 1.34
AC004540.1-204ENST00000449537 JPH4Q96JJ6 628 aa23.39■■□□□ 1.33
AC004540.1-204ENST00000449537 ADAMTS12P58397 1594 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms