RNA–Protein interactions for RNA: ENST00000447609.5

LMO3-209, Transcript of LIM domain only 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO3, Length 3,365 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-209ENST00000447609 AEBP2Q6ZN18 517 aaPredicted RBP11.98□□□□□ -0.49
LMO3-209ENST00000447609 CHIC1Q5VXU3 224 aa11.55□□□□□ -0.56
LMO3-209ENST00000447609 NISCHQ9Y2I1 1504 aa11.17□□□□□ -0.62
LMO3-209ENST00000447609 SENP3Q9H4L4 574 aaPredicted RBP10.35□□□□□ -0.75
LMO3-209ENST00000447609 DCAF8L2P0C7V8 631 aa10.11□□□□□ -0.79
LMO3-209ENST00000447609 PHF23Q9BUL5 403 aaPredicted RBP10.08□□□□□ -0.8
LMO3-209ENST00000447609 ABCC9O60706 1549 aa9.79□□□□□ -0.84
LMO3-209ENST00000447609 CCDC180Q9P1Z9 1646 aa9.67□□□□□ -0.86
LMO3-209ENST00000447609 FOXD1Q16676 465 aa9.52□□□□□ -0.89
LMO3-209ENST00000447609 SHROOM4Q9ULL8 1493 aa9.45□□□□□ -0.9
LMO3-209ENST00000447609 PABPN1Q86U42 306 aaKnown RBP eCLIP9.34□□□□□ -0.91
LMO3-209ENST00000447609 RB1CC1Q8TDY2 1594 aa9.28□□□□□ -0.92
LMO3-209ENST00000447609 ZCCHC6Q5VYS8 1495 aaKnown RBP9.26□□□□□ -0.93
LMO3-209ENST00000447609 NACADO15069 1562 aa9.23□□□□□ -0.93
LMO3-209ENST00000447609 PLPPR3Q6T4P5 718 aa9.21□□□□□ -0.94
LMO3-209ENST00000447609 SCRIBQ14160 1630 aa9.14□□□□□ -0.95
LMO3-209ENST00000447609 SUPT5HO00267 1087 aaKnown RBP9.12□□□□□ -0.95
LMO3-209ENST00000447609 PELP1Q8IZL8 1130 aaKnown RBP9.11□□□□□ -0.95
LMO3-209ENST00000447609 MSH5O43196 834 aa9.08□□□□□ -0.96
LMO3-209ENST00000447609 DCAF1Q9Y4B6 1507 aa9.06□□□□□ -0.96
LMO3-209ENST00000447609 MYO15BQ96JP2 1530 aa9.02□□□□□ -0.97
LMO3-209ENST00000447609 HRCP23327 699 aa8.98□□□□□ -0.97
LMO3-209ENST00000447609 MYT1Q01538 1121 aa8.9□□□□□ -0.98
LMO3-209ENST00000447609 UNC13AQ9UPW8 1703 aa8.89□□□□□ -0.99
LMO3-209ENST00000447609 PPP6R1Q9UPN7 881 aa8.8□□□□□ -1
LMO3-209ENST00000447609 PIAS4Q8N2W9 510 aaPredicted RBP8.78□□□□□ -1
LMO3-209ENST00000447609 CECR2Q9BXF3 1484 aa8.75□□□□□ -1.01
LMO3-209ENST00000447609 BICRAQ9NZM4 1560 aa8.74□□□□□ -1.01
LMO3-209ENST00000447609 DNAJC5BQ9UF47 199 aa8.74□□□□□ -1.01
LMO3-209ENST00000447609 ADRA2BP18089 450 aa8.72□□□□□ -1.01
LMO3-209ENST00000447609 BAZ1AQ9NRL2 1556 aaPredicted RBP8.7□□□□□ -1.02
LMO3-209ENST00000447609 BAZ1BQ9UIG0 1483 aaKnown RBP8.68□□□□□ -1.02
LMO3-209ENST00000447609 EIF4G1Q04637 1599 aaKnown RBP8.68□□□□□ -1.02
LMO3-209ENST00000447609 PCGF6Q9BYE7 350 aa8.67□□□□□ -1.02
LMO3-209ENST00000447609 ZEB1P37275 1124 aaPredicted RBP8.65□□□□□ -1.02
LMO3-209ENST00000447609 POTEDQ86YR6 584 aa8.65□□□□□ -1.03
LMO3-209ENST00000447609 RSF1Q96T23 1441 aaPredicted RBP8.64□□□□□ -1.03
LMO3-209ENST00000447609 MROH2BQ7Z745 1585 aa8.63□□□□□ -1.03
LMO3-209ENST00000447609 SMARCA2P51531 1590 aa8.62□□□□□ -1.03
LMO3-209ENST00000447609 CC2D2AQ9P2K1 1620 aa8.62□□□□□ -1.03
LMO3-209ENST00000447609 ATAD2BQ9ULI0 1458 aa8.6□□□□□ -1.03
LMO3-209ENST00000447609 SMARCA4P51532 1647 aa8.59□□□□□ -1.03
LMO3-209ENST00000447609 ERCC6Q03468 1493 aa8.57□□□□□ -1.04
LMO3-209ENST00000447609 PPARGC1BQ86YN6 1023 aaKnown RBP8.55□□□□□ -1.04
LMO3-209ENST00000447609 TRIM41Q8WV44 630 aa8.53□□□□□ -1.04
LMO3-209ENST00000447609 EHMT2Q96KQ7 1210 aa8.53□□□□□ -1.04
LMO3-209ENST00000447609 NCAPD3P42695 1498 aa8.53□□□□□ -1.04
LMO3-209ENST00000447609 WIZO95785 1651 aa8.52□□□□□ -1.05
LMO3-209ENST00000447609 TRIM26Q12899 539 aaPredicted RBP8.51□□□□□ -1.05
LMO3-209ENST00000447609 FAM9AQ8IZU1 332 aaPredicted RBP8.51□□□□□ -1.05
LMO3-209ENST00000447609 PDS5BQ9NTI5 1447 aa8.46□□□□□ -1.06
LMO3-209ENST00000447609 CADPSQ9ULU8 1353 aa8.45□□□□□ -1.06
LMO3-209ENST00000447609 FBLN2P98095 1184 aa8.44□□□□□ -1.06
LMO3-209ENST00000447609 TOP2AP11388 1531 aaKnown RBP8.44□□□□□ -1.06
LMO3-209ENST00000447609 SCAF1Q9H7N4 1312 aaKnown RBP8.42□□□□□ -1.06
LMO3-209ENST00000447609 CCDC88BA6NC98 1476 aa8.42□□□□□ -1.06
LMO3-209ENST00000447609 HMGXB3Q12766 1538 aa8.42□□□□□ -1.06
LMO3-209ENST00000447609 CENPBP07199 599 aaPredicted RBP8.4□□□□□ -1.06
LMO3-209ENST00000447609 TTBK1Q5TCY1 1321 aaPredicted RBP8.39□□□□□ -1.07
LMO3-209ENST00000447609 RANGAP1P46060 587 aaPredicted RBP8.38□□□□□ -1.07
LMO3-209ENST00000447609 NESP48681 1621 aa8.38□□□□□ -1.07
LMO3-209ENST00000447609 CEP164Q9UPV0 1460 aa8.35□□□□□ -1.07
LMO3-209ENST00000447609 FANCD2Q9BXW9 1451 aa8.34□□□□□ -1.07
LMO3-209ENST00000447609 ACIN1Q9UKV3 1341 aaKnown RBP8.33□□□□□ -1.08
LMO3-209ENST00000447609 UBTFP17480 764 aaKnown RBP8.33□□□□□ -1.08
LMO3-209ENST00000447609 PEG3Q9GZU2 1588 aa8.32□□□□□ -1.08
LMO3-209ENST00000447609 WRNQ14191 1432 aaPredicted RBP eCLIP8.29□□□□□ -1.08
LMO3-209ENST00000447609 CHMP7Q8WUX9 453 aaPredicted RBP8.29□□□□□ -1.08
LMO3-209ENST00000447609 CFTRP13569 1480 aa8.27□□□□□ -1.08
LMO3-209ENST00000447609 LAMC3Q9Y6N6 1575 aa8.27□□□□□ -1.09
LMO3-209ENST00000447609 ATP1B4Q9UN42 357 aaPredicted RBP8.27□□□□□ -1.09
LMO3-209ENST00000447609 DMRT2Q9Y5R5 561 aa8.26□□□□□ -1.09
LMO3-209ENST00000447609 SOGA1O94964 1423 aa8.24□□□□□ -1.09
LMO3-209ENST00000447609 MRC2Q9UBG0 1479 aa8.24□□□□□ -1.09
LMO3-209ENST00000447609 TDRD9Q8NDG6 1382 aaKnown RBP8.23□□□□□ -1.09
LMO3-209ENST00000447609 ABCC8Q09428 1581 aa8.22□□□□□ -1.09
LMO3-209ENST00000447609 LOC105371045A0A1W2PR82 267 aa8.21□□□□□ -1.09
LMO3-209ENST00000447609 GTF3C3Q9Y5Q9 886 aa8.21□□□□□ -1.1
LMO3-209ENST00000447609 CSRNP3Q8WYN3 585 aa8.19□□□□□ -1.1
LMO3-209ENST00000447609 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.19□□□□□ -1.1
LMO3-209ENST00000447609 HNRNPUL2Q1KMD3 747 aaKnown RBP8.19□□□□□ -1.1
LMO3-209ENST00000447609 APLP2Q06481 763 aa8.19□□□□□ -1.1
LMO3-209ENST00000447609 CUX2O14529 1486 aa8.18□□□□□ -1.1
LMO3-209ENST00000447609 NEUROD1Q13562 356 aa8.18□□□□□ -1.1
LMO3-209ENST00000447609 KIF27Q86VH2 1401 aa8.16□□□□□ -1.1
LMO3-209ENST00000447609 FGD5Q6ZNL6 1462 aa8.15□□□□□ -1.11
LMO3-209ENST00000447609 TOPBP1Q92547 1522 aa8.15□□□□□ -1.11
LMO3-209ENST00000447609 OSCARQ8IYS5 282 aa8.14□□□□□ -1.11
LMO3-209ENST00000447609 RAD54L2Q9Y4B4 1467 aa8.14□□□□□ -1.11
LMO3-209ENST00000447609 DIEXFQ68CQ4 756 aaKnown RBP8.14□□□□□ -1.11
LMO3-209ENST00000447609 P3H3Q8IVL6 736 aa8.13□□□□□ -1.11
LMO3-209ENST00000447609 CLSPNQ9HAW4 1339 aa8.12□□□□□ -1.11
LMO3-209ENST00000447609 CCER1Q8TC90 406 aaPredicted RBP8.12□□□□□ -1.11
LMO3-209ENST00000447609 AQRO60306 1485 aaKnown RBP eCLIP8.12□□□□□ -1.11
LMO3-209ENST00000447609 IFT140Q96RY7 1462 aa8.11□□□□□ -1.11
LMO3-209ENST00000447609 URB2Q14146 1524 aaKnown RBP8.11□□□□□ -1.11
LMO3-209ENST00000447609 NPM1P06748 294 aaKnown RBP eCLIP8.11□□□□□ -1.11
LMO3-209ENST00000447609 KIF21AQ7Z4S6 1674 aa8.1□□□□□ -1.11
LMO3-209ENST00000447609 DNMBPQ6XZF7 1577 aa8.1□□□□□ -1.11
LMO3-209ENST00000447609 POLA1P09884 1462 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms