RNA–Protein interactions for RNA: ENST00000444621.1

HLA-F-221, Transcript of major histocompatibility complex, class I, F, humanhuman

Gene HLA-F, Length 495 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-221ENST00000444621 NISCHQ9Y2I1 1504 aa26.92■■□□□ 1.9
HLA-F-221ENST00000444621 ABCC9O60706 1549 aa24.87■■□□□ 1.57
HLA-F-221ENST00000444621 CCDC180Q9P1Z9 1646 aa24.39■■□□□ 1.49
HLA-F-221ENST00000444621 DNAJC5BQ9UF47 199 aa23.78■■□□□ 1.4
HLA-F-221ENST00000444621 RB1CC1Q8TDY2 1594 aa23.44■■□□□ 1.34
HLA-F-221ENST00000444621 NACADO15069 1562 aa23.15■■□□□ 1.3
HLA-F-221ENST00000444621 PABPN1Q86U42 306 aaKnown RBP eCLIP23.08■■□□□ 1.29
HLA-F-221ENST00000444621 UNC13AQ9UPW8 1703 aa22.99■■□□□ 1.27
HLA-F-221ENST00000444621 DCAF8L2P0C7V8 631 aa22.96■■□□□ 1.27
HLA-F-221ENST00000444621 BICRAQ9NZM4 1560 aa22.8■■□□□ 1.24
HLA-F-221ENST00000444621 MYO15BQ96JP2 1530 aa22.64■■□□□ 1.21
HLA-F-221ENST00000444621 CC2D2AQ9P2K1 1620 aa22.45■■□□□ 1.18
HLA-F-221ENST00000444621 CECR2Q9BXF3 1484 aa22.44■■□□□ 1.18
HLA-F-221ENST00000444621 SHROOM4Q9ULL8 1493 aa22.37■■□□□ 1.17
HLA-F-221ENST00000444621 EIF4G1Q04637 1599 aaKnown RBP22.26■■□□□ 1.15
HLA-F-221ENST00000444621 ZCCHC6Q5VYS8 1495 aaKnown RBP22.25■■□□□ 1.15
HLA-F-221ENST00000444621 SCRIBQ14160 1630 aa22.21■■□□□ 1.15
HLA-F-221ENST00000444621 DCAF1Q9Y4B6 1507 aa22.18■■□□□ 1.14
HLA-F-221ENST00000444621 DNAJC5Q9H3Z4 198 aa22.17■■□□□ 1.14
HLA-F-221ENST00000444621 CUX2O14529 1486 aa21.6■■□□□ 1.05
HLA-F-221ENST00000444621 ERCC6Q03468 1493 aa21.49■■□□□ 1.03
HLA-F-221ENST00000444621 NCAPD3P42695 1498 aa21.37■■□□□ 1.01
HLA-F-221ENST00000444621 ATAD2BQ9ULI0 1458 aa21.25■□□□□ 0.99
HLA-F-221ENST00000444621 NESP48681 1621 aa21.23■□□□□ 0.99
HLA-F-221ENST00000444621 HMGXB3Q12766 1538 aa21.17■□□□□ 0.98
HLA-F-221ENST00000444621 SMARCA2P51531 1590 aa21.16■□□□□ 0.98
HLA-F-221ENST00000444621 SMARCA4P51532 1647 aa21.12■□□□□ 0.97
HLA-F-221ENST00000444621 THOC2Q8NI27 1593 aaKnown RBP21.11■□□□□ 0.97
HLA-F-221ENST00000444621 TRIM41Q8WV44 630 aa21.02■□□□□ 0.96
HLA-F-221ENST00000444621 BAZ1BQ9UIG0 1483 aaKnown RBP21.01■□□□□ 0.95
HLA-F-221ENST00000444621 LAMC3Q9Y6N6 1575 aa20.98■□□□□ 0.95
HLA-F-221ENST00000444621 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
HLA-F-221ENST00000444621 BAZ1AQ9NRL2 1556 aaPredicted RBP20.92■□□□□ 0.94
HLA-F-221ENST00000444621 PEG3Q9GZU2 1588 aa20.89■□□□□ 0.94
HLA-F-221ENST00000444621 PDS5BQ9NTI5 1447 aa20.87■□□□□ 0.93
HLA-F-221ENST00000444621 MROH2BQ7Z745 1585 aa20.76■□□□□ 0.91
HLA-F-221ENST00000444621 MRC2Q9UBG0 1479 aa20.73■□□□□ 0.91
HLA-F-221ENST00000444621 CADPSQ9ULU8 1353 aa20.7■□□□□ 0.9
HLA-F-221ENST00000444621 WDR62O43379 1518 aa20.69■□□□□ 0.9
HLA-F-221ENST00000444621 CEP164Q9UPV0 1460 aa20.55■□□□□ 0.88
HLA-F-221ENST00000444621 OSCARQ8IYS5 282 aa20.54■□□□□ 0.88
HLA-F-221ENST00000444621 WIZO95785 1651 aa20.51■□□□□ 0.87
HLA-F-221ENST00000444621 FANCD2Q9BXW9 1451 aa20.48■□□□□ 0.87
HLA-F-221ENST00000444621 RIMBP3CA6NJZ7 1639 aa20.38■□□□□ 0.85
HLA-F-221ENST00000444621 RIMBP3BA6NNM3 1639 aa20.38■□□□□ 0.85
HLA-F-221ENST00000444621 RIMBP3Q9UFD9 1639 aa20.38■□□□□ 0.85
HLA-F-221ENST00000444621 URB2Q14146 1524 aaKnown RBP20.36■□□□□ 0.85
HLA-F-221ENST00000444621 CFTRP13569 1480 aa20.36■□□□□ 0.85
HLA-F-221ENST00000444621 RSF1Q96T23 1441 aaPredicted RBP20.34■□□□□ 0.85
HLA-F-221ENST00000444621 ARHGEF11O15085 1522 aa20.22■□□□□ 0.83
HLA-F-221ENST00000444621 TOP2AP11388 1531 aaKnown RBP20.2■□□□□ 0.82
HLA-F-221ENST00000444621 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
HLA-F-221ENST00000444621 ZNF608Q9ULD9 1512 aaPredicted RBP20.18■□□□□ 0.82
HLA-F-221ENST00000444621 IFT140Q96RY7 1462 aa20.14■□□□□ 0.81
HLA-F-221ENST00000444621 CYB5RLQ6IPT4 315 aa20.12■□□□□ 0.81
HLA-F-221ENST00000444621 EIF4G3O43432 1585 aaKnown RBP20.06■□□□□ 0.8
HLA-F-221ENST00000444621 TRHP20396 242 aaPredicted RBP20.06■□□□□ 0.8
HLA-F-221ENST00000444621 TOPBP1Q92547 1522 aa20.04■□□□□ 0.8
HLA-F-221ENST00000444621 CHD1O14646 1710 aa20.04■□□□□ 0.8
HLA-F-221ENST00000444621 ARAP1Q96P48 1450 aa20■□□□□ 0.79
HLA-F-221ENST00000444621 CCDC88BA6NC98 1476 aa19.97■□□□□ 0.79
HLA-F-221ENST00000444621 ABCC8Q09428 1581 aa19.95■□□□□ 0.78
HLA-F-221ENST00000444621 AQRO60306 1485 aaKnown RBP eCLIP19.93■□□□□ 0.78
HLA-F-221ENST00000444621 DNMBPQ6XZF7 1577 aa19.92■□□□□ 0.78
HLA-F-221ENST00000444621 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
HLA-F-221ENST00000444621 FBLN2P98095 1184 aa19.91■□□□□ 0.78
HLA-F-221ENST00000444621 SUPT5HO00267 1087 aaKnown RBP19.86■□□□□ 0.77
HLA-F-221ENST00000444621 AEBP2Q6ZN18 517 aaPredicted RBP19.83■□□□□ 0.77
HLA-F-221ENST00000444621 POLA1P09884 1462 aaPredicted RBP19.79■□□□□ 0.76
HLA-F-221ENST00000444621 RAD54L2Q9Y4B4 1467 aa19.75■□□□□ 0.75
HLA-F-221ENST00000444621 CLASP1Q7Z460 1538 aa19.75■□□□□ 0.75
HLA-F-221ENST00000444621 TDRD9Q8NDG6 1382 aaKnown RBP19.73■□□□□ 0.75
HLA-F-221ENST00000444621 SNAPC4Q5SXM2 1469 aa19.72■□□□□ 0.75
HLA-F-221ENST00000444621 SOGA1O94964 1423 aa19.7■□□□□ 0.74
HLA-F-221ENST00000444621 SYNJ1O43426 1573 aa19.69■□□□□ 0.74
HLA-F-221ENST00000444621 CHMP7Q8WUX9 453 aaPredicted RBP19.67■□□□□ 0.74
HLA-F-221ENST00000444621 WDR97A6NE52 1622 aa19.65■□□□□ 0.74
HLA-F-221ENST00000444621 MAGI1Q96QZ7 1491 aaPredicted RBP19.63■□□□□ 0.73
HLA-F-221ENST00000444621 FGD5Q6ZNL6 1462 aa19.61■□□□□ 0.73
HLA-F-221ENST00000444621 GRIN2BQ13224 1484 aa19.58■□□□□ 0.72
HLA-F-221ENST00000444621 SYNJ2O15056 1496 aa19.57■□□□□ 0.72
HLA-F-221ENST00000444621 GAPVD1Q14C86 1478 aa19.56■□□□□ 0.72
HLA-F-221ENST00000444621 CUX1P39880 1505 aa19.53■□□□□ 0.72
HLA-F-221ENST00000444621 PBRM1Q86U86 1689 aa19.52■□□□□ 0.72
HLA-F-221ENST00000444621 ERCC6L2Q5T890 1561 aa19.44■□□□□ 0.7
HLA-F-221ENST00000444621 ABCA5Q8WWZ7 1642 aa19.39■□□□□ 0.69
HLA-F-221ENST00000444621 ABCA10Q8WWZ4 1543 aa19.35■□□□□ 0.69
HLA-F-221ENST00000444621 KIF13AQ9H1H9 1805 aa19.34■□□□□ 0.69
HLA-F-221ENST00000444621 GRIN2AQ12879 1464 aa19.34■□□□□ 0.69
HLA-F-221ENST00000444621 CEP170Q5SW79 1584 aa19.33■□□□□ 0.69
HLA-F-221ENST00000444621 NUP160Q12769 1436 aa19.28■□□□□ 0.68
HLA-F-221ENST00000444621 SHROOM2Q13796 1616 aa19.28■□□□□ 0.68
HLA-F-221ENST00000444621 ADAMTS12P58397 1594 aa19.27■□□□□ 0.68
HLA-F-221ENST00000444621 WRNQ14191 1432 aaPredicted RBP eCLIP19.25■□□□□ 0.67
HLA-F-221ENST00000444621 TOP2BQ02880 1626 aa19.18■□□□□ 0.66
HLA-F-221ENST00000444621 BIVM-ERCC5R4GMW8 1640 aa19.18■□□□□ 0.66
HLA-F-221ENST00000444621 FHAD1B1AJZ9 1412 aa19.17■□□□□ 0.66
HLA-F-221ENST00000444621 PRG4Q92954 1404 aaPredicted RBP19.14■□□□□ 0.65
HLA-F-221ENST00000444621 FAM69CQ0P6D2 419 aa19.13■□□□□ 0.65
HLA-F-221ENST00000444621 ABCC10Q5T3U5 1492 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms