RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 NISCHQ9Y2I1 1504 aa27.17■■□□□ 1.94
SF3A1-203ENST00000444440 CCDC180Q9P1Z9 1646 aa24.35■■□□□ 1.49
SF3A1-203ENST00000444440 ABCC9O60706 1549 aa24.02■■□□□ 1.44
SF3A1-203ENST00000444440 RB1CC1Q8TDY2 1594 aa22.97■■□□□ 1.27
SF3A1-203ENST00000444440 NACADO15069 1562 aa22.85■■□□□ 1.25
SF3A1-203ENST00000444440 UNC13AQ9UPW8 1703 aa22.72■■□□□ 1.23
SF3A1-203ENST00000444440 DCAF8L2P0C7V8 631 aa22.68■■□□□ 1.22
SF3A1-203ENST00000444440 ZCCHC6Q5VYS8 1495 aaKnown RBP22.6■■□□□ 1.21
SF3A1-203ENST00000444440 MYO15BQ96JP2 1530 aa22.6■■□□□ 1.21
SF3A1-203ENST00000444440 DCAF1Q9Y4B6 1507 aa22.44■■□□□ 1.18
SF3A1-203ENST00000444440 BICRAQ9NZM4 1560 aa22.4■■□□□ 1.18
SF3A1-203ENST00000444440 PABPN1Q86U42 306 aaKnown RBP eCLIP22.34■■□□□ 1.17
SF3A1-203ENST00000444440 DNAJC5BQ9UF47 199 aa22.3■■□□□ 1.16
SF3A1-203ENST00000444440 SCRIBQ14160 1630 aa22.2■■□□□ 1.15
SF3A1-203ENST00000444440 SHROOM4Q9ULL8 1493 aa21.95■■□□□ 1.1
SF3A1-203ENST00000444440 CC2D2AQ9P2K1 1620 aa21.77■■□□□ 1.08
SF3A1-203ENST00000444440 EIF4G1Q04637 1599 aaKnown RBP21.76■■□□□ 1.07
SF3A1-203ENST00000444440 CECR2Q9BXF3 1484 aa21.57■■□□□ 1.04
SF3A1-203ENST00000444440 SMARCA4P51532 1647 aa21.2■□□□□ 0.98
SF3A1-203ENST00000444440 ATAD2BQ9ULI0 1458 aa21.07■□□□□ 0.96
SF3A1-203ENST00000444440 NCAPD3P42695 1498 aa21.07■□□□□ 0.96
SF3A1-203ENST00000444440 BAZ1AQ9NRL2 1556 aaPredicted RBP21.06■□□□□ 0.96
SF3A1-203ENST00000444440 SMARCA2P51531 1590 aa21.02■□□□□ 0.95
SF3A1-203ENST00000444440 HMGXB3Q12766 1538 aa20.99■□□□□ 0.95
SF3A1-203ENST00000444440 MROH2BQ7Z745 1585 aa20.98■□□□□ 0.95
SF3A1-203ENST00000444440 PEG3Q9GZU2 1588 aa20.97■□□□□ 0.95
SF3A1-203ENST00000444440 BAZ1BQ9UIG0 1483 aaKnown RBP20.87■□□□□ 0.93
SF3A1-203ENST00000444440 WIZO95785 1651 aa20.81■□□□□ 0.92
SF3A1-203ENST00000444440 NESP48681 1621 aa20.76■□□□□ 0.91
SF3A1-203ENST00000444440 ERCC6Q03468 1493 aa20.64■□□□□ 0.89
SF3A1-203ENST00000444440 KIF21AQ7Z4S6 1674 aa20.61■□□□□ 0.89
SF3A1-203ENST00000444440 LAMC3Q9Y6N6 1575 aa20.61■□□□□ 0.89
SF3A1-203ENST00000444440 RSF1Q96T23 1441 aaPredicted RBP20.58■□□□□ 0.88
SF3A1-203ENST00000444440 THOC2Q8NI27 1593 aaKnown RBP20.55■□□□□ 0.88
SF3A1-203ENST00000444440 CUX2O14529 1486 aa20.53■□□□□ 0.88
SF3A1-203ENST00000444440 TOP2AP11388 1531 aaKnown RBP20.48■□□□□ 0.87
SF3A1-203ENST00000444440 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
SF3A1-203ENST00000444440 PDS5BQ9NTI5 1447 aa20.36■□□□□ 0.85
SF3A1-203ENST00000444440 PRDM2Q13029 1718 aa20.33■□□□□ 0.85
SF3A1-203ENST00000444440 CFTRP13569 1480 aa20.28■□□□□ 0.84
SF3A1-203ENST00000444440 MRC2Q9UBG0 1479 aa20.25■□□□□ 0.83
SF3A1-203ENST00000444440 WDR62O43379 1518 aa20.24■□□□□ 0.83
SF3A1-203ENST00000444440 FANCD2Q9BXW9 1451 aa20.23■□□□□ 0.83
SF3A1-203ENST00000444440 CEP164Q9UPV0 1460 aa20.23■□□□□ 0.83
SF3A1-203ENST00000444440 CCDC88BA6NC98 1476 aa20.22■□□□□ 0.83
SF3A1-203ENST00000444440 DNAJC5Q9H3Z4 198 aa20.17■□□□□ 0.82
SF3A1-203ENST00000444440 URB2Q14146 1524 aaKnown RBP20.11■□□□□ 0.81
SF3A1-203ENST00000444440 TOPBP1Q92547 1522 aa19.92■□□□□ 0.78
SF3A1-203ENST00000444440 DNMBPQ6XZF7 1577 aa19.87■□□□□ 0.77
SF3A1-203ENST00000444440 ZNF608Q9ULD9 1512 aaPredicted RBP19.81■□□□□ 0.76
SF3A1-203ENST00000444440 SUPT5HO00267 1087 aaKnown RBP19.79■□□□□ 0.76
SF3A1-203ENST00000444440 TARBP1Q13395 1621 aaKnown RBP19.79■□□□□ 0.76
SF3A1-203ENST00000444440 ABCC8Q09428 1581 aa19.78■□□□□ 0.76
SF3A1-203ENST00000444440 IFT140Q96RY7 1462 aa19.78■□□□□ 0.76
SF3A1-203ENST00000444440 EIF4G3O43432 1585 aaKnown RBP19.77■□□□□ 0.76
SF3A1-203ENST00000444440 POLA1P09884 1462 aaPredicted RBP19.73■□□□□ 0.75
SF3A1-203ENST00000444440 CUX1P39880 1505 aa19.71■□□□□ 0.75
SF3A1-203ENST00000444440 RAD54L2Q9Y4B4 1467 aa19.65■□□□□ 0.74
SF3A1-203ENST00000444440 CHD1O14646 1710 aa19.65■□□□□ 0.74
SF3A1-203ENST00000444440 FGD5Q6ZNL6 1462 aa19.64■□□□□ 0.73
SF3A1-203ENST00000444440 WDR97A6NE52 1622 aa19.64■□□□□ 0.73
SF3A1-203ENST00000444440 AQRO60306 1485 aaKnown RBP eCLIP19.62■□□□□ 0.731e-8■■■■■ 27.4
SF3A1-203ENST00000444440 SOGA1O94964 1423 aa19.56■□□□□ 0.72
SF3A1-203ENST00000444440 OSCARQ8IYS5 282 aa19.54■□□□□ 0.72
SF3A1-203ENST00000444440 PBRM1Q86U86 1689 aa19.52■□□□□ 0.71
SF3A1-203ENST00000444440 BIVM-ERCC5R4GMW8 1640 aa19.51■□□□□ 0.71
SF3A1-203ENST00000444440 TDRD9Q8NDG6 1382 aaKnown RBP19.5■□□□□ 0.71
SF3A1-203ENST00000444440 SYNJ1O43426 1573 aa19.49■□□□□ 0.71
SF3A1-203ENST00000444440 RIMBP3CA6NJZ7 1639 aa19.48■□□□□ 0.71
SF3A1-203ENST00000444440 RIMBP3BA6NNM3 1639 aa19.48■□□□□ 0.71
SF3A1-203ENST00000444440 RIMBP3Q9UFD9 1639 aa19.48■□□□□ 0.71
SF3A1-203ENST00000444440 TOP2BQ02880 1626 aa19.45■□□□□ 0.7
SF3A1-203ENST00000444440 ABCA5Q8WWZ7 1642 aa19.45■□□□□ 0.7
SF3A1-203ENST00000444440 SNAPC4Q5SXM2 1469 aa19.45■□□□□ 0.7
SF3A1-203ENST00000444440 TRIM41Q8WV44 630 aa19.41■□□□□ 0.7
SF3A1-203ENST00000444440 ABCA10Q8WWZ4 1543 aa19.41■□□□□ 0.7
SF3A1-203ENST00000444440 ARHGEF11O15085 1522 aa19.38■□□□□ 0.69
SF3A1-203ENST00000444440 GRIN2BQ13224 1484 aa19.37■□□□□ 0.69
SF3A1-203ENST00000444440 WRNQ14191 1432 aaPredicted RBP eCLIP19.37■□□□□ 0.69
SF3A1-203ENST00000444440 GAPVD1Q14C86 1478 aa19.36■□□□□ 0.69
SF3A1-203ENST00000444440 MAGI1Q96QZ7 1491 aaPredicted RBP19.36■□□□□ 0.69
SF3A1-203ENST00000444440 FBLN2P98095 1184 aa19.33■□□□□ 0.68
SF3A1-203ENST00000444440 CLASP1Q7Z460 1538 aa19.32■□□□□ 0.68
SF3A1-203ENST00000444440 SYNJ2O15056 1496 aa19.29■□□□□ 0.68
SF3A1-203ENST00000444440 ADAMTS12P58397 1594 aa19.27■□□□□ 0.67
SF3A1-203ENST00000444440 ARAP1Q96P48 1450 aa19.22■□□□□ 0.67
SF3A1-203ENST00000444440 CHMP7Q8WUX9 453 aaPredicted RBP19.21■□□□□ 0.67
SF3A1-203ENST00000444440 ERICH3Q5RHP9 1530 aa19.17■□□□□ 0.66
SF3A1-203ENST00000444440 CEP170Q5SW79 1584 aa19.17■□□□□ 0.66
SF3A1-203ENST00000444440 GRIN2AQ12879 1464 aa19.16■□□□□ 0.66
SF3A1-203ENST00000444440 CYB5RLQ6IPT4 315 aa19.11■□□□□ 0.65
SF3A1-203ENST00000444440 ERCC6L2Q5T890 1561 aa19.1■□□□□ 0.65
SF3A1-203ENST00000444440 FHAD1B1AJZ9 1412 aa19.09■□□□□ 0.65
SF3A1-203ENST00000444440 NUP160Q12769 1436 aa19.08■□□□□ 0.65
SF3A1-203ENST00000444440 SHROOM2Q13796 1616 aa19.07■□□□□ 0.64
SF3A1-203ENST00000444440 RUSC2Q8N2Y8 1516 aa19■□□□□ 0.63
SF3A1-203ENST00000444440 CUL7Q14999 1698 aa19■□□□□ 0.63
SF3A1-203ENST00000444440 KIF27Q86VH2 1401 aa18.94■□□□□ 0.62
SF3A1-203ENST00000444440 IGF1RP08069 1367 aa18.93■□□□□ 0.62
SF3A1-203ENST00000444440 PRG4Q92954 1404 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms