RNA–Protein interactions for RNA: ENST00000443003.2

RPSA-202, Transcript of ribosomal protein SA, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene RPSA, Length 1,032 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPSA-202ENST00000443003 NISCHQ9Y2I1 1504 aa18.99■□□□□ 0.63
RPSA-202ENST00000443003 ABCC9O60706 1549 aa17.43■□□□□ 0.38
RPSA-202ENST00000443003 CCDC180Q9P1Z9 1646 aa17.21■□□□□ 0.35
RPSA-202ENST00000443003 RB1CC1Q8TDY2 1594 aa16.47■□□□□ 0.23
RPSA-202ENST00000443003 DNAJC5BQ9UF47 199 aa16.46■□□□□ 0.23
RPSA-202ENST00000443003 NACADO15069 1562 aa16.26■□□□□ 0.19
RPSA-202ENST00000443003 UNC13AQ9UPW8 1703 aa16.2■□□□□ 0.18
RPSA-202ENST00000443003 DCAF8L2P0C7V8 631 aa16.17■□□□□ 0.18
RPSA-202ENST00000443003 PABPN1Q86U42 306 aaKnown RBP eCLIP16.15■□□□□ 0.18
RPSA-202ENST00000443003 BICRAQ9NZM4 1560 aa15.99■□□□□ 0.15
RPSA-202ENST00000443003 MYO15BQ96JP2 1530 aa15.89■□□□□ 0.13
RPSA-202ENST00000443003 CC2D2AQ9P2K1 1620 aa15.74■□□□□ 0.11
RPSA-202ENST00000443003 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
RPSA-202ENST00000443003 ZCCHC6Q5VYS8 1495 aaKnown RBP15.7■□□□□ 0.1
RPSA-202ENST00000443003 CECR2Q9BXF3 1484 aa15.7■□□□□ 0.1
RPSA-202ENST00000443003 SHROOM4Q9ULL8 1493 aa15.69■□□□□ 0.1
RPSA-202ENST00000443003 EIF4G1Q04637 1599 aaKnown RBP15.63■□□□□ 0.09
RPSA-202ENST00000443003 DCAF1Q9Y4B6 1507 aa15.63■□□□□ 0.09
RPSA-202ENST00000443003 DNAJC5Q9H3Z4 198 aa15.26■□□□□ 0.03
RPSA-202ENST00000443003 AEBP2Q6ZN18 517 aaPredicted RBP15.2■□□□□ 0.02
RPSA-202ENST00000443003 ERCC6Q03468 1493 aa15.08■□□□□ 0
RPSA-202ENST00000443003 CUX2O14529 1486 aa15.07■□□□□ 0
RPSA-202ENST00000443003 NCAPD3P42695 1498 aa14.97□□□□□ -0.01
RPSA-202ENST00000443003 ATAD2BQ9ULI0 1458 aa14.93□□□□□ -0.02
RPSA-202ENST00000443003 SMARCA4P51532 1647 aa14.92□□□□□ -0.02
RPSA-202ENST00000443003 NESP48681 1621 aa14.91□□□□□ -0.02
RPSA-202ENST00000443003 HMGXB3Q12766 1538 aa14.9□□□□□ -0.02
RPSA-202ENST00000443003 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
RPSA-202ENST00000443003 THOC2Q8NI27 1593 aaKnown RBP14.82□□□□□ -0.04
RPSA-202ENST00000443003 BAZ1BQ9UIG0 1483 aaKnown RBP14.82□□□□□ -0.04
RPSA-202ENST00000443003 KIF21AQ7Z4S6 1674 aa14.78□□□□□ -0.04
RPSA-202ENST00000443003 BAZ1AQ9NRL2 1556 aaPredicted RBP14.78□□□□□ -0.04
RPSA-202ENST00000443003 CHIC1Q5VXU3 224 aa14.75□□□□□ -0.05
RPSA-202ENST00000443003 LAMC3Q9Y6N6 1575 aa14.74□□□□□ -0.05
RPSA-202ENST00000443003 PEG3Q9GZU2 1588 aa14.71□□□□□ -0.05
RPSA-202ENST00000443003 MROH2BQ7Z745 1585 aa14.65□□□□□ -0.06
RPSA-202ENST00000443003 PDS5BQ9NTI5 1447 aa14.62□□□□□ -0.07
RPSA-202ENST00000443003 TRIM41Q8WV44 630 aa14.61□□□□□ -0.07
RPSA-202ENST00000443003 MRC2Q9UBG0 1479 aa14.55□□□□□ -0.08
RPSA-202ENST00000443003 WIZO95785 1651 aa14.53□□□□□ -0.08
RPSA-202ENST00000443003 WDR62O43379 1518 aa14.53□□□□□ -0.08
RPSA-202ENST00000443003 CADPSQ9ULU8 1353 aa14.51□□□□□ -0.09
RPSA-202ENST00000443003 CEP164Q9UPV0 1460 aa14.45□□□□□ -0.1
RPSA-202ENST00000443003 FANCD2Q9BXW9 1451 aa14.4□□□□□ -0.1
RPSA-202ENST00000443003 CFTRP13569 1480 aa14.31□□□□□ -0.12
RPSA-202ENST00000443003 PRDM2Q13029 1718 aa14.31□□□□□ -0.12
RPSA-202ENST00000443003 URB2Q14146 1524 aaKnown RBP14.31□□□□□ -0.12
RPSA-202ENST00000443003 OSCARQ8IYS5 282 aa14.3□□□□□ -0.12
RPSA-202ENST00000443003 TOP2AP11388 1531 aaKnown RBP14.28□□□□□ -0.12
RPSA-202ENST00000443003 RIMBP3CA6NJZ7 1639 aa14.25□□□□□ -0.13
RPSA-202ENST00000443003 RIMBP3BA6NNM3 1639 aa14.25□□□□□ -0.13
RPSA-202ENST00000443003 RIMBP3Q9UFD9 1639 aa14.25□□□□□ -0.13
RPSA-202ENST00000443003 RSF1Q96T23 1441 aaPredicted RBP14.22□□□□□ -0.13
RPSA-202ENST00000443003 ZNF608Q9ULD9 1512 aaPredicted RBP14.17□□□□□ -0.14
RPSA-202ENST00000443003 ARHGEF11O15085 1522 aa14.15□□□□□ -0.14
RPSA-202ENST00000443003 EIF4G3O43432 1585 aaKnown RBP14.14□□□□□ -0.15
RPSA-202ENST00000443003 IFT140Q96RY7 1462 aa14.14□□□□□ -0.15
RPSA-202ENST00000443003 CHD1O14646 1710 aa14.12□□□□□ -0.15
RPSA-202ENST00000443003 TOPBP1Q92547 1522 aa14.1□□□□□ -0.15
RPSA-202ENST00000443003 CCDC88BA6NC98 1476 aa14.09□□□□□ -0.15
RPSA-202ENST00000443003 DNMBPQ6XZF7 1577 aa14.05□□□□□ -0.16
RPSA-202ENST00000443003 CYB5RLQ6IPT4 315 aa14.02□□□□□ -0.17
RPSA-202ENST00000443003 TARBP1Q13395 1621 aaKnown RBP14.01□□□□□ -0.17
RPSA-202ENST00000443003 ABCC8Q09428 1581 aa14.01□□□□□ -0.17
RPSA-202ENST00000443003 AQRO60306 1485 aaKnown RBP eCLIP13.99□□□□□ -0.17not detected■■■■■ 29.8
RPSA-202ENST00000443003 ARAP1Q96P48 1450 aa13.99□□□□□ -0.17
RPSA-202ENST00000443003 TRHP20396 242 aaPredicted RBP13.98□□□□□ -0.17
RPSA-202ENST00000443003 FBLN2P98095 1184 aa13.98□□□□□ -0.17
RPSA-202ENST00000443003 POLA1P09884 1462 aaPredicted RBP13.95□□□□□ -0.18
RPSA-202ENST00000443003 RAD54L2Q9Y4B4 1467 aa13.92□□□□□ -0.18
RPSA-202ENST00000443003 SNAPC4Q5SXM2 1469 aa13.88□□□□□ -0.19
RPSA-202ENST00000443003 TDRD9Q8NDG6 1382 aaKnown RBP13.87□□□□□ -0.19
RPSA-202ENST00000443003 CLASP1Q7Z460 1538 aa13.85□□□□□ -0.19
RPSA-202ENST00000443003 SYNJ1O43426 1573 aa13.85□□□□□ -0.19
RPSA-202ENST00000443003 SOGA1O94964 1423 aa13.85□□□□□ -0.19
RPSA-202ENST00000443003 FGD5Q6ZNL6 1462 aa13.85□□□□□ -0.19
RPSA-202ENST00000443003 WDR97A6NE52 1622 aa13.83□□□□□ -0.2
RPSA-202ENST00000443003 PBRM1Q86U86 1689 aa13.82□□□□□ -0.2
RPSA-202ENST00000443003 MAGI1Q96QZ7 1491 aaPredicted RBP13.8□□□□□ -0.2
RPSA-202ENST00000443003 CHMP7Q8WUX9 453 aaPredicted RBP13.79□□□□□ -0.2
RPSA-202ENST00000443003 CUX1P39880 1505 aa13.79□□□□□ -0.2
RPSA-202ENST00000443003 GRIN2BQ13224 1484 aa13.77□□□□□ -0.21
RPSA-202ENST00000443003 SYNJ2O15056 1496 aa13.76□□□□□ -0.21
RPSA-202ENST00000443003 GAPVD1Q14C86 1478 aa13.72□□□□□ -0.21
RPSA-202ENST00000443003 ABCA5Q8WWZ7 1642 aa13.69□□□□□ -0.22
RPSA-202ENST00000443003 ERCC6L2Q5T890 1561 aa13.66□□□□□ -0.22
RPSA-202ENST00000443003 ABCA10Q8WWZ4 1543 aa13.64□□□□□ -0.23
RPSA-202ENST00000443003 ADAMTS12P58397 1594 aa13.62□□□□□ -0.23
RPSA-202ENST00000443003 GRIN2AQ12879 1464 aa13.61□□□□□ -0.23
RPSA-202ENST00000443003 CEP170Q5SW79 1584 aa13.61□□□□□ -0.23
RPSA-202ENST00000443003 KIF13AQ9H1H9 1805 aa13.57□□□□□ -0.24
RPSA-202ENST00000443003 SHROOM2Q13796 1616 aa13.56□□□□□ -0.24
RPSA-202ENST00000443003 NUP160Q12769 1436 aa13.54□□□□□ -0.24
RPSA-202ENST00000443003 BIVM-ERCC5R4GMW8 1640 aa13.53□□□□□ -0.24
RPSA-202ENST00000443003 WRNQ14191 1432 aaPredicted RBP eCLIP13.53□□□□□ -0.24not detected■■■■■ 33.4
RPSA-202ENST00000443003 TOP2BQ02880 1626 aa13.51□□□□□ -0.25
RPSA-202ENST00000443003 FHAD1B1AJZ9 1412 aa13.49□□□□□ -0.25
RPSA-202ENST00000443003 SUPT5HO00267 1087 aaKnown RBP13.47□□□□□ -0.25
RPSA-202ENST00000443003 ERICH3Q5RHP9 1530 aa13.47□□□□□ -0.25
RPSA-202ENST00000443003 PRG4Q92954 1404 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms