RNA–Protein interactions for RNA: ENST00000442830.5

PTPRE-203, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 5

Gene PTPRE, Length 779 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-203ENST00000442830 NISCHQ9Y2I1 1504 aa34.6■■■■□ 3.13
PTPRE-203ENST00000442830 CCDC180Q9P1Z9 1646 aa31.2■■■□□ 2.58
PTPRE-203ENST00000442830 ABCC9O60706 1549 aa30.97■■■□□ 2.55
PTPRE-203ENST00000442830 RB1CC1Q8TDY2 1594 aa29.65■■■□□ 2.34
PTPRE-203ENST00000442830 NACADO15069 1562 aa29.46■■■□□ 2.31
PTPRE-203ENST00000442830 MYO15BQ96JP2 1530 aa29.1■■■□□ 2.25
PTPRE-203ENST00000442830 DCAF8L2P0C7V8 631 aa29.05■■■□□ 2.24
PTPRE-203ENST00000442830 UNC13AQ9UPW8 1703 aa28.91■■■□□ 2.22
PTPRE-203ENST00000442830 DNAJC5BQ9UF47 199 aa28.91■■■□□ 2.22
PTPRE-203ENST00000442830 PABPN1Q86U42 306 aaKnown RBP eCLIP28.74■■■□□ 2.19
PTPRE-203ENST00000442830 DCAF1Q9Y4B6 1507 aa28.7■■■□□ 2.19
PTPRE-203ENST00000442830 ZCCHC6Q5VYS8 1495 aaKnown RBP28.69■■■□□ 2.18
PTPRE-203ENST00000442830 BICRAQ9NZM4 1560 aa28.66■■■□□ 2.18
PTPRE-203ENST00000442830 SHROOM4Q9ULL8 1493 aa28.53■■■□□ 2.16
PTPRE-203ENST00000442830 SCRIBQ14160 1630 aa28.25■■■□□ 2.11
PTPRE-203ENST00000442830 CC2D2AQ9P2K1 1620 aa28.05■■■□□ 2.08
PTPRE-203ENST00000442830 EIF4G1Q04637 1599 aaKnown RBP28.01■■■□□ 2.07
PTPRE-203ENST00000442830 CECR2Q9BXF3 1484 aa27.96■■■□□ 2.07
PTPRE-203ENST00000442830 NCAPD3P42695 1498 aa27.13■■□□□ 1.93
PTPRE-203ENST00000442830 SMARCA2P51531 1590 aa27.04■■□□□ 1.92
PTPRE-203ENST00000442830 SMARCA4P51532 1647 aa27.01■■□□□ 1.92
PTPRE-203ENST00000442830 ATAD2BQ9ULI0 1458 aa27■■□□□ 1.91
PTPRE-203ENST00000442830 HMGXB3Q12766 1538 aa26.99■■□□□ 1.91
PTPRE-203ENST00000442830 BAZ1AQ9NRL2 1556 aaPredicted RBP26.92■■□□□ 1.9
PTPRE-203ENST00000442830 CUX2O14529 1486 aa26.87■■□□□ 1.89
PTPRE-203ENST00000442830 ERCC6Q03468 1493 aa26.84■■□□□ 1.89
PTPRE-203ENST00000442830 PEG3Q9GZU2 1588 aa26.81■■□□□ 1.88
PTPRE-203ENST00000442830 BAZ1BQ9UIG0 1483 aaKnown RBP26.78■■□□□ 1.88
PTPRE-203ENST00000442830 DNAJC5Q9H3Z4 198 aa26.73■■□□□ 1.87
PTPRE-203ENST00000442830 LAMC3Q9Y6N6 1575 aa26.58■■□□□ 1.85
PTPRE-203ENST00000442830 MROH2BQ7Z745 1585 aa26.58■■□□□ 1.85
PTPRE-203ENST00000442830 NESP48681 1621 aa26.56■■□□□ 1.84
PTPRE-203ENST00000442830 THOC2Q8NI27 1593 aaKnown RBP26.43■■□□□ 1.82
PTPRE-203ENST00000442830 PDS5BQ9NTI5 1447 aa26.41■■□□□ 1.82
PTPRE-203ENST00000442830 KIF21AQ7Z4S6 1674 aa26.34■■□□□ 1.81
PTPRE-203ENST00000442830 WIZO95785 1651 aa26.28■■□□□ 1.8
PTPRE-203ENST00000442830 CADPSQ9ULU8 1353 aa26.28■■□□□ 1.8
PTPRE-203ENST00000442830 MRC2Q9UBG0 1479 aa26.14■■□□□ 1.78
PTPRE-203ENST00000442830 WDR62O43379 1518 aa26.09■■□□□ 1.77
PTPRE-203ENST00000442830 CEP164Q9UPV0 1460 aa26.05■■□□□ 1.76
PTPRE-203ENST00000442830 RSF1Q96T23 1441 aaPredicted RBP26.04■■□□□ 1.76
PTPRE-203ENST00000442830 TOP2AP11388 1531 aaKnown RBP26.04■■□□□ 1.76
PTPRE-203ENST00000442830 CFTRP13569 1480 aa25.99■■□□□ 1.75
PTPRE-203ENST00000442830 FANCD2Q9BXW9 1451 aa25.98■■□□□ 1.75
PTPRE-203ENST00000442830 PRDM2Q13029 1718 aa25.88■■□□□ 1.73
PTPRE-203ENST00000442830 URB2Q14146 1524 aaKnown RBP25.72■■□□□ 1.71
PTPRE-203ENST00000442830 CCDC88BA6NC98 1476 aa25.66■■□□□ 1.7
PTPRE-203ENST00000442830 ABCC8Q09428 1581 aa25.57■■□□□ 1.68
PTPRE-203ENST00000442830 OSCARQ8IYS5 282 aa25.55■■□□□ 1.68
PTPRE-203ENST00000442830 IFT140Q96RY7 1462 aa25.54■■□□□ 1.68
PTPRE-203ENST00000442830 TOPBP1Q92547 1522 aa25.48■■□□□ 1.67
PTPRE-203ENST00000442830 AEBP2Q6ZN18 517 aaPredicted RBP25.48■■□□□ 1.67
PTPRE-203ENST00000442830 TRIM41Q8WV44 630 aa25.47■■□□□ 1.67
PTPRE-203ENST00000442830 DNMBPQ6XZF7 1577 aa25.44■■□□□ 1.66
PTPRE-203ENST00000442830 ZNF608Q9ULD9 1512 aaPredicted RBP25.36■■□□□ 1.65
PTPRE-203ENST00000442830 EIF4G3O43432 1585 aaKnown RBP25.33■■□□□ 1.65
PTPRE-203ENST00000442830 TARBP1Q13395 1621 aaKnown RBP25.26■■□□□ 1.63
PTPRE-203ENST00000442830 RIMBP3CA6NJZ7 1639 aa25.22■■□□□ 1.63
PTPRE-203ENST00000442830 RIMBP3BA6NNM3 1639 aa25.22■■□□□ 1.63
PTPRE-203ENST00000442830 RIMBP3Q9UFD9 1639 aa25.22■■□□□ 1.63
PTPRE-203ENST00000442830 POLA1P09884 1462 aaPredicted RBP25.21■■□□□ 1.63
PTPRE-203ENST00000442830 WDR97A6NE52 1622 aa25.19■■□□□ 1.62
PTPRE-203ENST00000442830 CHD1O14646 1710 aa25.15■■□□□ 1.62
PTPRE-203ENST00000442830 ARHGEF11O15085 1522 aa25.14■■□□□ 1.62
PTPRE-203ENST00000442830 AQRO60306 1485 aaKnown RBP eCLIP25.13■■□□□ 1.61
PTPRE-203ENST00000442830 SOGA1O94964 1423 aa25.1■■□□□ 1.61
PTPRE-203ENST00000442830 FGD5Q6ZNL6 1462 aa25.04■■□□□ 1.6
PTPRE-203ENST00000442830 RAD54L2Q9Y4B4 1467 aa25.03■■□□□ 1.6
PTPRE-203ENST00000442830 CUX1P39880 1505 aa25■■□□□ 1.59
PTPRE-203ENST00000442830 MAGI1Q96QZ7 1491 aaPredicted RBP24.97■■□□□ 1.59
PTPRE-203ENST00000442830 TDRD9Q8NDG6 1382 aaKnown RBP24.97■■□□□ 1.59
PTPRE-203ENST00000442830 FBLN2P98095 1184 aa24.97■■□□□ 1.59
PTPRE-203ENST00000442830 SNAPC4Q5SXM2 1469 aa24.94■■□□□ 1.58
PTPRE-203ENST00000442830 GRIN2BQ13224 1484 aa24.93■■□□□ 1.58
PTPRE-203ENST00000442830 SYNJ1O43426 1573 aa24.91■■□□□ 1.58
PTPRE-203ENST00000442830 ARAP1Q96P48 1450 aa24.86■■□□□ 1.57
PTPRE-203ENST00000442830 CYB5RLQ6IPT4 315 aa24.86■■□□□ 1.57
PTPRE-203ENST00000442830 CHMP7Q8WUX9 453 aaPredicted RBP24.86■■□□□ 1.57
PTPRE-203ENST00000442830 CLASP1Q7Z460 1538 aa24.86■■□□□ 1.57
PTPRE-203ENST00000442830 PBRM1Q86U86 1689 aa24.85■■□□□ 1.57
PTPRE-203ENST00000442830 SYNJ2O15056 1496 aa24.85■■□□□ 1.57
PTPRE-203ENST00000442830 ABCA10Q8WWZ4 1543 aa24.82■■□□□ 1.56
PTPRE-203ENST00000442830 GAPVD1Q14C86 1478 aa24.82■■□□□ 1.56
PTPRE-203ENST00000442830 SUPT5HO00267 1087 aaKnown RBP24.78■■□□□ 1.56
PTPRE-203ENST00000442830 ABCA5Q8WWZ7 1642 aa24.78■■□□□ 1.56
PTPRE-203ENST00000442830 WRNQ14191 1432 aaPredicted RBP eCLIP24.72■■□□□ 1.553e-13■■■■■ 117
PTPRE-203ENST00000442830 BIVM-ERCC5R4GMW8 1640 aa24.7■■□□□ 1.54
PTPRE-203ENST00000442830 TOP2BQ02880 1626 aa24.68■■□□□ 1.54
PTPRE-203ENST00000442830 TRHP20396 242 aaPredicted RBP24.62■■□□□ 1.53
PTPRE-203ENST00000442830 ADAMTS12P58397 1594 aa24.59■■□□□ 1.53
PTPRE-203ENST00000442830 GRIN2AQ12879 1464 aa24.59■■□□□ 1.53
PTPRE-203ENST00000442830 ERICH3Q5RHP9 1530 aa24.56■■□□□ 1.52
PTPRE-203ENST00000442830 FHAD1B1AJZ9 1412 aa24.52■■□□□ 1.52
PTPRE-203ENST00000442830 NUP160Q12769 1436 aa24.51■■□□□ 1.51
PTPRE-203ENST00000442830 CEP170Q5SW79 1584 aa24.46■■□□□ 1.51
PTPRE-203ENST00000442830 SHROOM2Q13796 1616 aa24.43■■□□□ 1.5
PTPRE-203ENST00000442830 CHIC1Q5VXU3 224 aa24.33■■□□□ 1.49
PTPRE-203ENST00000442830 ERCC6L2Q5T890 1561 aa24.33■■□□□ 1.48
PTPRE-203ENST00000442830 RUSC2Q8N2Y8 1516 aa24.25■■□□□ 1.47
PTPRE-203ENST00000442830 PRG4Q92954 1404 aaPredicted RBP24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms