RNA–Protein interactions for RNA: ENST00000442653.1

TOP3B-209, Transcript of DNA topoisomerase III beta, humanhuman

TSL 3

Gene TOP3B, Length 400 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-209ENST00000442653 NISCHQ9Y2I1 1504 aa21.11■□□□□ 0.97
TOP3B-209ENST00000442653 ABCC9O60706 1549 aa19.05■□□□□ 0.64
TOP3B-209ENST00000442653 CCDC180Q9P1Z9 1646 aa18.95■□□□□ 0.62
TOP3B-209ENST00000442653 RB1CC1Q8TDY2 1594 aa18.06■□□□□ 0.48
TOP3B-209ENST00000442653 DNAJC5BQ9UF47 199 aa17.95■□□□□ 0.46
TOP3B-209ENST00000442653 NACADO15069 1562 aa17.93■□□□□ 0.46
TOP3B-209ENST00000442653 AEBP2Q6ZN18 517 aaPredicted RBP17.92■□□□□ 0.46
TOP3B-209ENST00000442653 DCAF8L2P0C7V8 631 aa17.82■□□□□ 0.44
TOP3B-209ENST00000442653 PABPN1Q86U42 306 aaKnown RBP eCLIP17.72■□□□□ 0.43
TOP3B-209ENST00000442653 UNC13AQ9UPW8 1703 aa17.69■□□□□ 0.42
TOP3B-209ENST00000442653 MYO15BQ96JP2 1530 aa17.66■□□□□ 0.42
TOP3B-209ENST00000442653 BICRAQ9NZM4 1560 aa17.59■□□□□ 0.41
TOP3B-209ENST00000442653 CHIC1Q5VXU3 224 aa17.53■□□□□ 0.4
TOP3B-209ENST00000442653 ZCCHC6Q5VYS8 1495 aaKnown RBP17.5■□□□□ 0.39
TOP3B-209ENST00000442653 DCAF1Q9Y4B6 1507 aa17.42■□□□□ 0.38
TOP3B-209ENST00000442653 SCRIBQ14160 1630 aa17.3■□□□□ 0.36
TOP3B-209ENST00000442653 SHROOM4Q9ULL8 1493 aa17.29■□□□□ 0.36
TOP3B-209ENST00000442653 CC2D2AQ9P2K1 1620 aa17.19■□□□□ 0.34
TOP3B-209ENST00000442653 CECR2Q9BXF3 1484 aa17.15■□□□□ 0.34
TOP3B-209ENST00000442653 EIF4G1Q04637 1599 aaKnown RBP17.15■□□□□ 0.34
TOP3B-209ENST00000442653 NCAPD3P42695 1498 aa16.57■□□□□ 0.24
TOP3B-209ENST00000442653 ATAD2BQ9ULI0 1458 aa16.52■□□□□ 0.23
TOP3B-209ENST00000442653 DNAJC5Q9H3Z4 198 aa16.49■□□□□ 0.23
TOP3B-209ENST00000442653 SMARCA4P51532 1647 aa16.48■□□□□ 0.23
TOP3B-209ENST00000442653 SMARCA2P51531 1590 aa16.45■□□□□ 0.22
TOP3B-209ENST00000442653 HMGXB3Q12766 1538 aa16.44■□□□□ 0.22
TOP3B-209ENST00000442653 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
TOP3B-209ENST00000442653 CUX2O14529 1486 aa16.41■□□□□ 0.22
TOP3B-209ENST00000442653 BAZ1AQ9NRL2 1556 aaPredicted RBP16.38■□□□□ 0.21
TOP3B-209ENST00000442653 NESP48681 1621 aa16.36■□□□□ 0.21
TOP3B-209ENST00000442653 BAZ1BQ9UIG0 1483 aaKnown RBP16.35■□□□□ 0.21
TOP3B-209ENST00000442653 PEG3Q9GZU2 1588 aa16.33■□□□□ 0.2
TOP3B-209ENST00000442653 MROH2BQ7Z745 1585 aa16.28■□□□□ 0.2
TOP3B-209ENST00000442653 THOC2Q8NI27 1593 aaKnown RBP16.19■□□□□ 0.18
TOP3B-209ENST00000442653 LAMC3Q9Y6N6 1575 aa16.19■□□□□ 0.18
TOP3B-209ENST00000442653 KIF21AQ7Z4S6 1674 aa16.12■□□□□ 0.17
TOP3B-209ENST00000442653 PDS5BQ9NTI5 1447 aa16.09■□□□□ 0.17
TOP3B-209ENST00000442653 WIZO95785 1651 aa16.08■□□□□ 0.16
TOP3B-209ENST00000442653 CADPSQ9ULU8 1353 aa16.05■□□□□ 0.16
TOP3B-209ENST00000442653 MRC2Q9UBG0 1479 aa15.97■□□□□ 0.15
TOP3B-209ENST00000442653 WDR62O43379 1518 aa15.95■□□□□ 0.14
TOP3B-209ENST00000442653 RSF1Q96T23 1441 aaPredicted RBP15.92■□□□□ 0.14
TOP3B-209ENST00000442653 CEP164Q9UPV0 1460 aa15.9■□□□□ 0.14
TOP3B-209ENST00000442653 FANCD2Q9BXW9 1451 aa15.89■□□□□ 0.13
TOP3B-209ENST00000442653 CFTRP13569 1480 aa15.87■□□□□ 0.13
TOP3B-209ENST00000442653 TOP2AP11388 1531 aaKnown RBP15.86■□□□□ 0.13
TOP3B-209ENST00000442653 URB2Q14146 1524 aaKnown RBP15.78■□□□□ 0.12
TOP3B-209ENST00000442653 TRIM41Q8WV44 630 aa15.74■□□□□ 0.11
TOP3B-209ENST00000442653 CCDC88BA6NC98 1476 aa15.69■□□□□ 0.1
TOP3B-209ENST00000442653 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
TOP3B-209ENST00000442653 OSCARQ8IYS5 282 aa15.64■□□□□ 0.09
TOP3B-209ENST00000442653 ZNF608Q9ULD9 1512 aaPredicted RBP15.6■□□□□ 0.09
TOP3B-209ENST00000442653 TOPBP1Q92547 1522 aa15.58■□□□□ 0.09
TOP3B-209ENST00000442653 IFT140Q96RY7 1462 aa15.58■□□□□ 0.08
TOP3B-209ENST00000442653 DNMBPQ6XZF7 1577 aa15.5■□□□□ 0.07
TOP3B-209ENST00000442653 EIF4G3O43432 1585 aaKnown RBP15.49■□□□□ 0.07
TOP3B-209ENST00000442653 ABCC8Q09428 1581 aa15.49■□□□□ 0.07
TOP3B-209ENST00000442653 RIMBP3CA6NJZ7 1639 aa15.47■□□□□ 0.07
TOP3B-209ENST00000442653 RIMBP3BA6NNM3 1639 aa15.47■□□□□ 0.07
TOP3B-209ENST00000442653 RIMBP3Q9UFD9 1639 aa15.47■□□□□ 0.07
TOP3B-209ENST00000442653 TARBP1Q13395 1621 aaKnown RBP15.46■□□□□ 0.06
TOP3B-209ENST00000442653 PHF23Q9BUL5 403 aaPredicted RBP15.45■□□□□ 0.06
TOP3B-209ENST00000442653 AQRO60306 1485 aaKnown RBP eCLIP15.44■□□□□ 0.061e-6■■■■□ 24.9
TOP3B-209ENST00000442653 ARHGEF11O15085 1522 aa15.43■□□□□ 0.06
TOP3B-209ENST00000442653 POLA1P09884 1462 aaPredicted RBP15.42■□□□□ 0.06
TOP3B-209ENST00000442653 CHD1O14646 1710 aa15.38■□□□□ 0.05
TOP3B-209ENST00000442653 RAD54L2Q9Y4B4 1467 aa15.38■□□□□ 0.05
TOP3B-209ENST00000442653 TDRD9Q8NDG6 1382 aaKnown RBP15.33■□□□□ 0.04
TOP3B-209ENST00000442653 SOGA1O94964 1423 aa15.33■□□□□ 0.04
TOP3B-209ENST00000442653 FGD5Q6ZNL6 1462 aa15.32■□□□□ 0.04
TOP3B-209ENST00000442653 FBLN2P98095 1184 aa15.31■□□□□ 0.04
TOP3B-209ENST00000442653 CUX1P39880 1505 aa15.3■□□□□ 0.04
TOP3B-209ENST00000442653 CYB5RLQ6IPT4 315 aa15.3■□□□□ 0.04
TOP3B-209ENST00000442653 ARAP1Q96P48 1450 aa15.27■□□□□ 0.04
TOP3B-209ENST00000442653 SNAPC4Q5SXM2 1469 aa15.27■□□□□ 0.03
TOP3B-209ENST00000442653 WDR97A6NE52 1622 aa15.25■□□□□ 0.03
TOP3B-209ENST00000442653 CLASP1Q7Z460 1538 aa15.22■□□□□ 0.03
TOP3B-209ENST00000442653 MAGI1Q96QZ7 1491 aaPredicted RBP15.21■□□□□ 0.03
TOP3B-209ENST00000442653 GRIN2BQ13224 1484 aa15.2■□□□□ 0.02
TOP3B-209ENST00000442653 CHMP7Q8WUX9 453 aaPredicted RBP15.18■□□□□ 0.02
TOP3B-209ENST00000442653 SYNJ2O15056 1496 aa15.17■□□□□ 0.02
TOP3B-209ENST00000442653 SYNJ1O43426 1573 aa15.16■□□□□ 0.02
TOP3B-209ENST00000442653 SUPT5HO00267 1087 aaKnown RBP15.15■□□□□ 0.02
TOP3B-209ENST00000442653 GAPVD1Q14C86 1478 aa15.14■□□□□ 0.01
TOP3B-209ENST00000442653 PBRM1Q86U86 1689 aa15.14■□□□□ 0.01
TOP3B-209ENST00000442653 ABCA10Q8WWZ4 1543 aa15.13■□□□□ 0.01
TOP3B-209ENST00000442653 TRHP20396 242 aaPredicted RBP15.13■□□□□ 0.01
TOP3B-209ENST00000442653 SENP3Q9H4L4 574 aaPredicted RBP15.12■□□□□ 0.01
TOP3B-209ENST00000442653 ABCA5Q8WWZ7 1642 aa15.12■□□□□ 0.01
TOP3B-209ENST00000442653 WRNQ14191 1432 aaPredicted RBP eCLIP15.05■□□□□ -0
TOP3B-209ENST00000442653 GRIN2AQ12879 1464 aa15.02■□□□□ -0
TOP3B-209ENST00000442653 TOP2BQ02880 1626 aa15.02□□□□□ -0.01
TOP3B-209ENST00000442653 BIVM-ERCC5R4GMW8 1640 aa15.02□□□□□ -0.01
TOP3B-209ENST00000442653 ADAMTS12P58397 1594 aa15.02□□□□□ -0.01
TOP3B-209ENST00000442653 ERCC6L2Q5T890 1561 aa15□□□□□ -0.01
TOP3B-209ENST00000442653 CEP170Q5SW79 1584 aa14.98□□□□□ -0.01
TOP3B-209ENST00000442653 NUP160Q12769 1436 aa14.98□□□□□ -0.01
TOP3B-209ENST00000442653 FHAD1B1AJZ9 1412 aa14.94□□□□□ -0.02
TOP3B-209ENST00000442653 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
TOP3B-209ENST00000442653 SHROOM2Q13796 1616 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms