RNA–Protein interactions for RNA: ENST00000442232.1

TTC28-203, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 2

Gene TTC28, Length 499 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-203ENST00000442232 NISCHQ9Y2I1 1504 aa29.24■■■□□ 2.27
TTC28-203ENST00000442232 CCDC180Q9P1Z9 1646 aa26.29■■□□□ 1.8
TTC28-203ENST00000442232 ABCC9O60706 1549 aa26.09■■□□□ 1.77
TTC28-203ENST00000442232 RB1CC1Q8TDY2 1594 aa24.96■■□□□ 1.59
TTC28-203ENST00000442232 NACADO15069 1562 aa24.79■■□□□ 1.56
TTC28-203ENST00000442232 DCAF8L2P0C7V8 631 aa24.64■■□□□ 1.54
TTC28-203ENST00000442232 MYO15BQ96JP2 1530 aa24.45■■□□□ 1.5
TTC28-203ENST00000442232 UNC13AQ9UPW8 1703 aa24.38■■□□□ 1.49
TTC28-203ENST00000442232 ZCCHC6Q5VYS8 1495 aaKnown RBP24.26■■□□□ 1.47
TTC28-203ENST00000442232 PABPN1Q86U42 306 aaKnown RBP eCLIP24.25■■□□□ 1.47
TTC28-203ENST00000442232 DNAJC5BQ9UF47 199 aa24.22■■□□□ 1.47
TTC28-203ENST00000442232 DCAF1Q9Y4B6 1507 aa24.18■■□□□ 1.46
TTC28-203ENST00000442232 BICRAQ9NZM4 1560 aa24.12■■□□□ 1.45
TTC28-203ENST00000442232 SCRIBQ14160 1630 aa23.93■■□□□ 1.42
TTC28-203ENST00000442232 SHROOM4Q9ULL8 1493 aa23.92■■□□□ 1.42
TTC28-203ENST00000442232 CC2D2AQ9P2K1 1620 aa23.59■■□□□ 1.37
TTC28-203ENST00000442232 EIF4G1Q04637 1599 aaKnown RBP23.57■■□□□ 1.36
TTC28-203ENST00000442232 CECR2Q9BXF3 1484 aa23.5■■□□□ 1.35
TTC28-203ENST00000442232 SMARCA4P51532 1647 aa22.83■■□□□ 1.25
TTC28-203ENST00000442232 NCAPD3P42695 1498 aa22.81■■□□□ 1.24
TTC28-203ENST00000442232 SMARCA2P51531 1590 aa22.79■■□□□ 1.24
TTC28-203ENST00000442232 ATAD2BQ9ULI0 1458 aa22.76■■□□□ 1.23
TTC28-203ENST00000442232 BAZ1AQ9NRL2 1556 aaPredicted RBP22.75■■□□□ 1.23
TTC28-203ENST00000442232 HMGXB3Q12766 1538 aa22.72■■□□□ 1.23
TTC28-203ENST00000442232 BAZ1BQ9UIG0 1483 aaKnown RBP22.62■■□□□ 1.21
TTC28-203ENST00000442232 ERCC6Q03468 1493 aa22.6■■□□□ 1.21
TTC28-203ENST00000442232 PEG3Q9GZU2 1588 aa22.58■■□□□ 1.2
TTC28-203ENST00000442232 MROH2BQ7Z745 1585 aa22.5■■□□□ 1.19
TTC28-203ENST00000442232 CUX2O14529 1486 aa22.49■■□□□ 1.19
TTC28-203ENST00000442232 NESP48681 1621 aa22.42■■□□□ 1.18
TTC28-203ENST00000442232 LAMC3Q9Y6N6 1575 aa22.36■■□□□ 1.17
TTC28-203ENST00000442232 WIZO95785 1651 aa22.29■■□□□ 1.16
TTC28-203ENST00000442232 DNAJC5Q9H3Z4 198 aa22.24■■□□□ 1.15
TTC28-203ENST00000442232 KIF21AQ7Z4S6 1674 aa22.23■■□□□ 1.15
TTC28-203ENST00000442232 THOC2Q8NI27 1593 aaKnown RBP22.22■■□□□ 1.15
TTC28-203ENST00000442232 PDS5BQ9NTI5 1447 aa22.22■■□□□ 1.15
TTC28-203ENST00000442232 CADPSQ9ULU8 1353 aa22.13■■□□□ 1.13
TTC28-203ENST00000442232 RSF1Q96T23 1441 aaPredicted RBP22.07■■□□□ 1.12
TTC28-203ENST00000442232 TOP2AP11388 1531 aaKnown RBP22.04■■□□□ 1.12
TTC28-203ENST00000442232 MRC2Q9UBG0 1479 aa22.02■■□□□ 1.12
TTC28-203ENST00000442232 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
TTC28-203ENST00000442232 WDR62O43379 1518 aa21.95■■□□□ 1.1
TTC28-203ENST00000442232 CFTRP13569 1480 aa21.91■■□□□ 1.1
TTC28-203ENST00000442232 FANCD2Q9BXW9 1451 aa21.91■■□□□ 1.1
TTC28-203ENST00000442232 PRDM2Q13029 1718 aa21.85■■□□□ 1.09
TTC28-203ENST00000442232 CCDC88BA6NC98 1476 aa21.72■■□□□ 1.07
TTC28-203ENST00000442232 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
TTC28-203ENST00000442232 ABCC8Q09428 1581 aa21.52■■□□□ 1.04
TTC28-203ENST00000442232 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
TTC28-203ENST00000442232 TOPBP1Q92547 1522 aa21.5■■□□□ 1.03
TTC28-203ENST00000442232 DNMBPQ6XZF7 1577 aa21.48■■□□□ 1.03
TTC28-203ENST00000442232 OSCARQ8IYS5 282 aa21.44■■□□□ 1.02
TTC28-203ENST00000442232 ZNF608Q9ULD9 1512 aaPredicted RBP21.39■■□□□ 1.02
TTC28-203ENST00000442232 TRIM41Q8WV44 630 aa21.38■■□□□ 1.01
TTC28-203ENST00000442232 EIF4G3O43432 1585 aaKnown RBP21.37■■□□□ 1.01
TTC28-203ENST00000442232 TARBP1Q13395 1621 aaKnown RBP21.31■■□□□ 1
TTC28-203ENST00000442232 POLA1P09884 1462 aaPredicted RBP21.29■■□□□ 1
TTC28-203ENST00000442232 AQRO60306 1485 aaKnown RBP eCLIP21.22■□□□□ 0.99
TTC28-203ENST00000442232 CHD1O14646 1710 aa21.21■□□□□ 0.99
TTC28-203ENST00000442232 SUPT5HO00267 1087 aaKnown RBP21.21■□□□□ 0.99
TTC28-203ENST00000442232 SOGA1O94964 1423 aa21.19■□□□□ 0.98
TTC28-203ENST00000442232 FGD5Q6ZNL6 1462 aa21.19■□□□□ 0.98
TTC28-203ENST00000442232 WDR97A6NE52 1622 aa21.18■□□□□ 0.98
TTC28-203ENST00000442232 RIMBP3CA6NJZ7 1639 aa21.18■□□□□ 0.98
TTC28-203ENST00000442232 RIMBP3BA6NNM3 1639 aa21.18■□□□□ 0.98
TTC28-203ENST00000442232 RIMBP3Q9UFD9 1639 aa21.18■□□□□ 0.98
TTC28-203ENST00000442232 RAD54L2Q9Y4B4 1467 aa21.18■□□□□ 0.98
TTC28-203ENST00000442232 CUX1P39880 1505 aa21.16■□□□□ 0.98
TTC28-203ENST00000442232 ARHGEF11O15085 1522 aa21.11■□□□□ 0.97
TTC28-203ENST00000442232 FBLN2P98095 1184 aa21.11■□□□□ 0.97
TTC28-203ENST00000442232 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
TTC28-203ENST00000442232 SNAPC4Q5SXM2 1469 aa21.07■□□□□ 0.96
TTC28-203ENST00000442232 GRIN2BQ13224 1484 aa21.03■□□□□ 0.96
TTC28-203ENST00000442232 MAGI1Q96QZ7 1491 aaPredicted RBP21.03■□□□□ 0.96
TTC28-203ENST00000442232 PBRM1Q86U86 1689 aa21.02■□□□□ 0.95
TTC28-203ENST00000442232 SYNJ1O43426 1573 aa20.98■□□□□ 0.95
TTC28-203ENST00000442232 CHMP7Q8WUX9 453 aaPredicted RBP20.98■□□□□ 0.95
TTC28-203ENST00000442232 GAPVD1Q14C86 1478 aa20.96■□□□□ 0.95
TTC28-203ENST00000442232 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
TTC28-203ENST00000442232 ABCA10Q8WWZ4 1543 aa20.94■□□□□ 0.94
TTC28-203ENST00000442232 ABCA5Q8WWZ7 1642 aa20.93■□□□□ 0.94
TTC28-203ENST00000442232 BIVM-ERCC5R4GMW8 1640 aa20.92■□□□□ 0.94
TTC28-203ENST00000442232 TOP2BQ02880 1626 aa20.9■□□□□ 0.94
TTC28-203ENST00000442232 CLASP1Q7Z460 1538 aa20.9■□□□□ 0.94
TTC28-203ENST00000442232 WRNQ14191 1432 aaPredicted RBP eCLIP20.9■□□□□ 0.94
TTC28-203ENST00000442232 CYB5RLQ6IPT4 315 aa20.9■□□□□ 0.94
TTC28-203ENST00000442232 ARAP1Q96P48 1450 aa20.89■□□□□ 0.94
TTC28-203ENST00000442232 ADAMTS12P58397 1594 aa20.78■□□□□ 0.92
TTC28-203ENST00000442232 GRIN2AQ12879 1464 aa20.75■□□□□ 0.91
TTC28-203ENST00000442232 ERICH3Q5RHP9 1530 aa20.72■□□□□ 0.91
TTC28-203ENST00000442232 TRHP20396 242 aaPredicted RBP20.7■□□□□ 0.9
TTC28-203ENST00000442232 FHAD1B1AJZ9 1412 aa20.7■□□□□ 0.9
TTC28-203ENST00000442232 CEP170Q5SW79 1584 aa20.66■□□□□ 0.9
TTC28-203ENST00000442232 NUP160Q12769 1436 aa20.64■□□□□ 0.89
TTC28-203ENST00000442232 SHROOM2Q13796 1616 aa20.57■□□□□ 0.88
TTC28-203ENST00000442232 ERCC6L2Q5T890 1561 aa20.55■□□□□ 0.88
TTC28-203ENST00000442232 CUL7Q14999 1698 aa20.49■□□□□ 0.87
TTC28-203ENST00000442232 KIF27Q86VH2 1401 aa20.49■□□□□ 0.87
TTC28-203ENST00000442232 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
TTC28-203ENST00000442232 PRG4Q92954 1404 aaPredicted RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms