RNA–Protein interactions for RNA: ENST00000440375.1

PDGFB-203, Transcript of platelet derived growth factor subunit B, humanhuman

TSL 4

Gene PDGFB, Length 556 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-203ENST00000440375 NISCHQ9Y2I1 1504 aa29.78■■■□□ 2.36
PDGFB-203ENST00000440375 CCDC180Q9P1Z9 1646 aa26.62■■□□□ 1.85
PDGFB-203ENST00000440375 ABCC9O60706 1549 aa26.47■■□□□ 1.83
PDGFB-203ENST00000440375 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
PDGFB-203ENST00000440375 NACADO15069 1562 aa25.1■■□□□ 1.61
PDGFB-203ENST00000440375 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
PDGFB-203ENST00000440375 MYO15BQ96JP2 1530 aa24.81■■□□□ 1.56
PDGFB-203ENST00000440375 ZCCHC6Q5VYS8 1495 aaKnown RBP24.76■■□□□ 1.55
PDGFB-203ENST00000440375 UNC13AQ9UPW8 1703 aa24.69■■□□□ 1.54
PDGFB-203ENST00000440375 PABPN1Q86U42 306 aaKnown RBP eCLIP24.66■■□□□ 1.54
PDGFB-203ENST00000440375 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
PDGFB-203ENST00000440375 DCAF1Q9Y4B6 1507 aa24.59■■□□□ 1.53
PDGFB-203ENST00000440375 BICRAQ9NZM4 1560 aa24.55■■□□□ 1.52
PDGFB-203ENST00000440375 SCRIBQ14160 1630 aa24.33■■□□□ 1.49
PDGFB-203ENST00000440375 SHROOM4Q9ULL8 1493 aa24.17■■□□□ 1.46
PDGFB-203ENST00000440375 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
PDGFB-203ENST00000440375 CC2D2AQ9P2K1 1620 aa23.91■■□□□ 1.42
PDGFB-203ENST00000440375 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
PDGFB-203ENST00000440375 SMARCA4P51532 1647 aa23.2■■□□□ 1.3
PDGFB-203ENST00000440375 NCAPD3P42695 1498 aa23.18■■□□□ 1.3
PDGFB-203ENST00000440375 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
PDGFB-203ENST00000440375 BAZ1AQ9NRL2 1556 aaPredicted RBP23.09■■□□□ 1.29
PDGFB-203ENST00000440375 SMARCA2P51531 1590 aa23.08■■□□□ 1.29
PDGFB-203ENST00000440375 HMGXB3Q12766 1538 aa23.05■■□□□ 1.28
PDGFB-203ENST00000440375 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
PDGFB-203ENST00000440375 PEG3Q9GZU2 1588 aa22.96■■□□□ 1.27
PDGFB-203ENST00000440375 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
PDGFB-203ENST00000440375 NESP48681 1621 aa22.82■■□□□ 1.24
PDGFB-203ENST00000440375 ERCC6Q03468 1493 aa22.8■■□□□ 1.24
PDGFB-203ENST00000440375 WIZO95785 1651 aa22.71■■□□□ 1.23
PDGFB-203ENST00000440375 CUX2O14529 1486 aa22.68■■□□□ 1.22
PDGFB-203ENST00000440375 LAMC3Q9Y6N6 1575 aa22.62■■□□□ 1.21
PDGFB-203ENST00000440375 RSF1Q96T23 1441 aaPredicted RBP22.57■■□□□ 1.2
PDGFB-203ENST00000440375 THOC2Q8NI27 1593 aaKnown RBP22.55■■□□□ 1.2
PDGFB-203ENST00000440375 KIF21AQ7Z4S6 1674 aa22.5■■□□□ 1.19
PDGFB-203ENST00000440375 CADPSQ9ULU8 1353 aa22.49■■□□□ 1.19
PDGFB-203ENST00000440375 PDS5BQ9NTI5 1447 aa22.47■■□□□ 1.19
PDGFB-203ENST00000440375 TOP2AP11388 1531 aaKnown RBP22.43■■□□□ 1.18
PDGFB-203ENST00000440375 DNAJC5Q9H3Z4 198 aa22.42■■□□□ 1.18
PDGFB-203ENST00000440375 MRC2Q9UBG0 1479 aa22.31■■□□□ 1.16
PDGFB-203ENST00000440375 CFTRP13569 1480 aa22.28■■□□□ 1.16
PDGFB-203ENST00000440375 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
PDGFB-203ENST00000440375 WDR62O43379 1518 aa22.26■■□□□ 1.15
PDGFB-203ENST00000440375 CEP164Q9UPV0 1460 aa22.25■■□□□ 1.15
PDGFB-203ENST00000440375 CCDC88BA6NC98 1476 aa22.16■■□□□ 1.14
PDGFB-203ENST00000440375 URB2Q14146 1524 aaKnown RBP22.09■■□□□ 1.13
PDGFB-203ENST00000440375 PRDM2Q13029 1718 aa22.06■■□□□ 1.12
PDGFB-203ENST00000440375 TOPBP1Q92547 1522 aa21.86■■□□□ 1.09
PDGFB-203ENST00000440375 DNMBPQ6XZF7 1577 aa21.79■■□□□ 1.08
PDGFB-203ENST00000440375 ZNF608Q9ULD9 1512 aaPredicted RBP21.79■■□□□ 1.08
PDGFB-203ENST00000440375 IFT140Q96RY7 1462 aa21.78■■□□□ 1.08
PDGFB-203ENST00000440375 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
PDGFB-203ENST00000440375 SUPT5HO00267 1087 aaKnown RBP21.69■■□□□ 1.06
PDGFB-203ENST00000440375 EIF4G3O43432 1585 aaKnown RBP21.67■■□□□ 1.06
PDGFB-203ENST00000440375 TARBP1Q13395 1621 aaKnown RBP21.66■■□□□ 1.06
PDGFB-203ENST00000440375 POLA1P09884 1462 aaPredicted RBP21.66■■□□□ 1.06
PDGFB-203ENST00000440375 OSCARQ8IYS5 282 aa21.63■■□□□ 1.05
PDGFB-203ENST00000440375 AQRO60306 1485 aaKnown RBP eCLIP21.59■■□□□ 1.05
PDGFB-203ENST00000440375 RAD54L2Q9Y4B4 1467 aa21.59■■□□□ 1.05
PDGFB-203ENST00000440375 CUX1P39880 1505 aa21.59■■□□□ 1.05
PDGFB-203ENST00000440375 FGD5Q6ZNL6 1462 aa21.56■■□□□ 1.04
PDGFB-203ENST00000440375 TRIM41Q8WV44 630 aa21.55■■□□□ 1.04
PDGFB-203ENST00000440375 SOGA1O94964 1423 aa21.52■■□□□ 1.04
PDGFB-203ENST00000440375 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
PDGFB-203ENST00000440375 CHD1O14646 1710 aa21.45■■□□□ 1.02
PDGFB-203ENST00000440375 RIMBP3CA6NJZ7 1639 aa21.41■■□□□ 1.02
PDGFB-203ENST00000440375 RIMBP3BA6NNM3 1639 aa21.41■■□□□ 1.02
PDGFB-203ENST00000440375 RIMBP3Q9UFD9 1639 aa21.41■■□□□ 1.02
PDGFB-203ENST00000440375 WDR97A6NE52 1622 aa21.4■■□□□ 1.02
PDGFB-203ENST00000440375 SNAPC4Q5SXM2 1469 aa21.39■■□□□ 1.02
PDGFB-203ENST00000440375 ARHGEF11O15085 1522 aa21.37■■□□□ 1.01
PDGFB-203ENST00000440375 FBLN2P98095 1184 aa21.36■■□□□ 1.01
PDGFB-203ENST00000440375 GRIN2BQ13224 1484 aa21.32■■□□□ 1
PDGFB-203ENST00000440375 MAGI1Q96QZ7 1491 aaPredicted RBP21.31■■□□□ 1
PDGFB-203ENST00000440375 ABCA10Q8WWZ4 1543 aa21.3■■□□□ 1
PDGFB-203ENST00000440375 SYNJ1O43426 1573 aa21.29■■□□□ 1
PDGFB-203ENST00000440375 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
PDGFB-203ENST00000440375 ABCA5Q8WWZ7 1642 aa21.28■■□□□ 1
PDGFB-203ENST00000440375 PBRM1Q86U86 1689 aa21.28■■□□□ 1
PDGFB-203ENST00000440375 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
PDGFB-203ENST00000440375 BIVM-ERCC5R4GMW8 1640 aa21.26■□□□□ 0.99
PDGFB-203ENST00000440375 WRNQ14191 1432 aaPredicted RBP eCLIP21.26■□□□□ 0.99
PDGFB-203ENST00000440375 SYNJ2O15056 1496 aa21.24■□□□□ 0.99
PDGFB-203ENST00000440375 CLASP1Q7Z460 1538 aa21.24■□□□□ 0.99
PDGFB-203ENST00000440375 CHMP7Q8WUX9 453 aaPredicted RBP21.22■□□□□ 0.99
PDGFB-203ENST00000440375 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
PDGFB-203ENST00000440375 CYB5RLQ6IPT4 315 aa21.14■□□□□ 0.97
PDGFB-203ENST00000440375 ADAMTS12P58397 1594 aa21.12■□□□□ 0.97
PDGFB-203ENST00000440375 GRIN2AQ12879 1464 aa21.07■□□□□ 0.96
PDGFB-203ENST00000440375 ERICH3Q5RHP9 1530 aa21.03■□□□□ 0.96
PDGFB-203ENST00000440375 CEP170Q5SW79 1584 aa21.02■□□□□ 0.95
PDGFB-203ENST00000440375 FHAD1B1AJZ9 1412 aa21.01■□□□□ 0.95
PDGFB-203ENST00000440375 NUP160Q12769 1436 aa21■□□□□ 0.95
PDGFB-203ENST00000440375 ERCC6L2Q5T890 1561 aa20.95■□□□□ 0.94
PDGFB-203ENST00000440375 SHROOM2Q13796 1616 aa20.88■□□□□ 0.93
PDGFB-203ENST00000440375 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
PDGFB-203ENST00000440375 TRHP20396 242 aaPredicted RBP20.82■□□□□ 0.92
PDGFB-203ENST00000440375 RUSC2Q8N2Y8 1516 aa20.82■□□□□ 0.92
PDGFB-203ENST00000440375 IGF1RP08069 1367 aa20.81■□□□□ 0.92
PDGFB-203ENST00000440375 PRG4Q92954 1404 aaPredicted RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms