RNA–Protein interactions for RNA: ENST00000440083.6

TNFRSF1A-204, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,034 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-204ENST00000440083 NISCHQ9Y2I1 1504 aa34.63■■■■□ 3.13
TNFRSF1A-204ENST00000440083 CCDC180Q9P1Z9 1646 aa30.69■■■□□ 2.5
TNFRSF1A-204ENST00000440083 ABCC9O60706 1549 aa29.96■■■□□ 2.39
TNFRSF1A-204ENST00000440083 ZCCHC6Q5VYS8 1495 aaKnown RBP28.9■■■□□ 2.22
TNFRSF1A-204ENST00000440083 DCAF8L2P0C7V8 631 aa28.89■■■□□ 2.22
TNFRSF1A-204ENST00000440083 RB1CC1Q8TDY2 1594 aa28.8■■■□□ 2.2
TNFRSF1A-204ENST00000440083 NACADO15069 1562 aa28.79■■■□□ 2.2
TNFRSF1A-204ENST00000440083 MYO15BQ96JP2 1530 aa28.63■■■□□ 2.17
TNFRSF1A-204ENST00000440083 DCAF1Q9Y4B6 1507 aa28.6■■■□□ 2.17
TNFRSF1A-204ENST00000440083 UNC13AQ9UPW8 1703 aa28.23■■■□□ 2.11
TNFRSF1A-204ENST00000440083 SCRIBQ14160 1630 aa28.12■■■□□ 2.09
TNFRSF1A-204ENST00000440083 PABPN1Q86U42 306 aaKnown RBP eCLIP28.04■■■□□ 2.08
TNFRSF1A-204ENST00000440083 BICRAQ9NZM4 1560 aa28■■■□□ 2.07
TNFRSF1A-204ENST00000440083 SHROOM4Q9ULL8 1493 aa27.57■■■□□ 2
TNFRSF1A-204ENST00000440083 DNAJC5BQ9UF47 199 aa27.36■■□□□ 1.97
TNFRSF1A-204ENST00000440083 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
TNFRSF1A-204ENST00000440083 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
TNFRSF1A-204ENST00000440083 CECR2Q9BXF3 1484 aa27.03■■□□□ 1.92
TNFRSF1A-204ENST00000440083 SMARCA4P51532 1647 aa26.87■■□□□ 1.89
TNFRSF1A-204ENST00000440083 BAZ1AQ9NRL2 1556 aaPredicted RBP26.8■■□□□ 1.88
TNFRSF1A-204ENST00000440083 MROH2BQ7Z745 1585 aa26.75■■□□□ 1.87
TNFRSF1A-204ENST00000440083 ATAD2BQ9ULI0 1458 aa26.66■■□□□ 1.86
TNFRSF1A-204ENST00000440083 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
TNFRSF1A-204ENST00000440083 NCAPD3P42695 1498 aa26.57■■□□□ 1.84
TNFRSF1A-204ENST00000440083 PEG3Q9GZU2 1588 aa26.54■■□□□ 1.84
TNFRSF1A-204ENST00000440083 WIZO95785 1651 aa26.47■■□□□ 1.83
TNFRSF1A-204ENST00000440083 HMGXB3Q12766 1538 aa26.47■■□□□ 1.83
TNFRSF1A-204ENST00000440083 RSF1Q96T23 1441 aaPredicted RBP26.47■■□□□ 1.83
TNFRSF1A-204ENST00000440083 BAZ1BQ9UIG0 1483 aaKnown RBP26.44■■□□□ 1.82
TNFRSF1A-204ENST00000440083 TOP2AP11388 1531 aaKnown RBP26.17■■□□□ 1.78
TNFRSF1A-204ENST00000440083 NESP48681 1621 aa26■■□□□ 1.75
TNFRSF1A-204ENST00000440083 SUPT5HO00267 1087 aaKnown RBP25.94■■□□□ 1.74
TNFRSF1A-204ENST00000440083 CCDC88BA6NC98 1476 aa25.86■■□□□ 1.73
TNFRSF1A-204ENST00000440083 LAMC3Q9Y6N6 1575 aa25.85■■□□□ 1.73
TNFRSF1A-204ENST00000440083 CADPSQ9ULU8 1353 aa25.82■■□□□ 1.72
TNFRSF1A-204ENST00000440083 ERCC6Q03468 1493 aa25.77■■□□□ 1.72
TNFRSF1A-204ENST00000440083 CFTRP13569 1480 aa25.71■■□□□ 1.71
TNFRSF1A-204ENST00000440083 KIF21AQ7Z4S6 1674 aa25.68■■□□□ 1.7
TNFRSF1A-204ENST00000440083 PDS5BQ9NTI5 1447 aa25.65■■□□□ 1.7
TNFRSF1A-204ENST00000440083 FANCD2Q9BXW9 1451 aa25.56■■□□□ 1.68
TNFRSF1A-204ENST00000440083 PRDM2Q13029 1718 aa25.54■■□□□ 1.68
TNFRSF1A-204ENST00000440083 THOC2Q8NI27 1593 aaKnown RBP25.54■■□□□ 1.68
TNFRSF1A-204ENST00000440083 CEP164Q9UPV0 1460 aa25.5■■□□□ 1.67
TNFRSF1A-204ENST00000440083 MRC2Q9UBG0 1479 aa25.44■■□□□ 1.66
TNFRSF1A-204ENST00000440083 CUX2O14529 1486 aa25.39■■□□□ 1.65
TNFRSF1A-204ENST00000440083 WDR62O43379 1518 aa25.35■■□□□ 1.65
TNFRSF1A-204ENST00000440083 URB2Q14146 1524 aaKnown RBP25.33■■□□□ 1.65
TNFRSF1A-204ENST00000440083 TOPBP1Q92547 1522 aa25.18■■□□□ 1.62
TNFRSF1A-204ENST00000440083 DNMBPQ6XZF7 1577 aa25.15■■□□□ 1.62
TNFRSF1A-204ENST00000440083 CUX1P39880 1505 aa25.08■■□□□ 1.61
TNFRSF1A-204ENST00000440083 ABCC8Q09428 1581 aa25.07■■□□□ 1.6
TNFRSF1A-204ENST00000440083 POLA1P09884 1462 aaPredicted RBP24.98■■□□□ 1.59
TNFRSF1A-204ENST00000440083 FGD5Q6ZNL6 1462 aa24.96■■□□□ 1.59
TNFRSF1A-204ENST00000440083 IFT140Q96RY7 1462 aa24.94■■□□□ 1.58
TNFRSF1A-204ENST00000440083 SYNJ1O43426 1573 aa24.93■■□□□ 1.58
TNFRSF1A-204ENST00000440083 WRNQ14191 1432 aaPredicted RBP eCLIP24.93■■□□□ 1.58
TNFRSF1A-204ENST00000440083 RAD54L2Q9Y4B4 1467 aa24.9■■□□□ 1.58
TNFRSF1A-204ENST00000440083 ZNF608Q9ULD9 1512 aaPredicted RBP24.9■■□□□ 1.58
TNFRSF1A-204ENST00000440083 TARBP1Q13395 1621 aaKnown RBP24.9■■□□□ 1.58
TNFRSF1A-204ENST00000440083 TOP2BQ02880 1626 aa24.86■■□□□ 1.57
TNFRSF1A-204ENST00000440083 BIVM-ERCC5R4GMW8 1640 aa24.86■■□□□ 1.57
TNFRSF1A-204ENST00000440083 SOGA1O94964 1423 aa24.85■■□□□ 1.57
TNFRSF1A-204ENST00000440083 EIF4G3O43432 1585 aaKnown RBP24.79■■□□□ 1.56
TNFRSF1A-204ENST00000440083 AQRO60306 1485 aaKnown RBP eCLIP24.76■■□□□ 1.551e-6■■■■■ 32
TNFRSF1A-204ENST00000440083 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
TNFRSF1A-204ENST00000440083 TDRD9Q8NDG6 1382 aaKnown RBP24.73■■□□□ 1.55
TNFRSF1A-204ENST00000440083 DNAJC5Q9H3Z4 198 aa24.71■■□□□ 1.55
TNFRSF1A-204ENST00000440083 ABCA10Q8WWZ4 1543 aa24.68■■□□□ 1.54
TNFRSF1A-204ENST00000440083 ABCA5Q8WWZ7 1642 aa24.61■■□□□ 1.53
TNFRSF1A-204ENST00000440083 GAPVD1Q14C86 1478 aa24.57■■□□□ 1.52
TNFRSF1A-204ENST00000440083 PBRM1Q86U86 1689 aa24.55■■□□□ 1.52
TNFRSF1A-204ENST00000440083 GRIN2BQ13224 1484 aa24.53■■□□□ 1.52
TNFRSF1A-204ENST00000440083 SNAPC4Q5SXM2 1469 aa24.53■■□□□ 1.52
TNFRSF1A-204ENST00000440083 CHD1O14646 1710 aa24.46■■□□□ 1.51
TNFRSF1A-204ENST00000440083 MAGI1Q96QZ7 1491 aaPredicted RBP24.44■■□□□ 1.5
TNFRSF1A-204ENST00000440083 TRIM41Q8WV44 630 aa24.43■■□□□ 1.5
TNFRSF1A-204ENST00000440083 FBLN2P98095 1184 aa24.4■■□□□ 1.5
TNFRSF1A-204ENST00000440083 ADAMTS12P58397 1594 aa24.37■■□□□ 1.49
TNFRSF1A-204ENST00000440083 KIF27Q86VH2 1401 aa24.37■■□□□ 1.49
TNFRSF1A-204ENST00000440083 CHIC1Q5VXU3 224 aa24.37■■□□□ 1.49
TNFRSF1A-204ENST00000440083 ERICH3Q5RHP9 1530 aa24.36■■□□□ 1.49
TNFRSF1A-204ENST00000440083 SYNJ2O15056 1496 aa24.35■■□□□ 1.49
TNFRSF1A-204ENST00000440083 OSCARQ8IYS5 282 aa24.34■■□□□ 1.49
TNFRSF1A-204ENST00000440083 CHMP7Q8WUX9 453 aaPredicted RBP24.31■■□□□ 1.48
TNFRSF1A-204ENST00000440083 RUSC2Q8N2Y8 1516 aa24.3■■□□□ 1.48
TNFRSF1A-204ENST00000440083 IGF1RP08069 1367 aa24.28■■□□□ 1.48
TNFRSF1A-204ENST00000440083 FHAD1B1AJZ9 1412 aa24.27■■□□□ 1.48
TNFRSF1A-204ENST00000440083 GRIN2AQ12879 1464 aa24.25■■□□□ 1.47
TNFRSF1A-204ENST00000440083 CUL7Q14999 1698 aa24.18■■□□□ 1.46
TNFRSF1A-204ENST00000440083 CLASP1Q7Z460 1538 aa24.17■■□□□ 1.46
TNFRSF1A-204ENST00000440083 CEP170Q5SW79 1584 aa24.16■■□□□ 1.46
TNFRSF1A-204ENST00000440083 CARMIL1Q5VZK9 1371 aa24.13■■□□□ 1.45
TNFRSF1A-204ENST00000440083 NUP160Q12769 1436 aa24.12■■□□□ 1.45
TNFRSF1A-204ENST00000440083 ARHGEF11O15085 1522 aa24.04■■□□□ 1.44
TNFRSF1A-204ENST00000440083 RIMBP3CA6NJZ7 1639 aa24.03■■□□□ 1.44
TNFRSF1A-204ENST00000440083 RIMBP3BA6NNM3 1639 aa24.03■■□□□ 1.44
TNFRSF1A-204ENST00000440083 RIMBP3Q9UFD9 1639 aa24.03■■□□□ 1.44
TNFRSF1A-204ENST00000440083 FAM9AQ8IZU1 332 aaPredicted RBP24.02■■□□□ 1.44
TNFRSF1A-204ENST00000440083 RAPGEF2Q9Y4G8 1499 aa24■■□□□ 1.43
TNFRSF1A-204ENST00000440083 EEA1Q15075 1411 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms