RNA–Protein interactions for RNA: ENST00000439765.3

CCDC188-201, Transcript of coiled-coil domain containing 188, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC188, Length 1,475 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188-201ENST00000439765 NISCHQ9Y2I1 1504 aa43.1■■■■■ 4.49
CCDC188-201ENST00000439765 CCDC180Q9P1Z9 1646 aa38.71■■■■□ 3.79
CCDC188-201ENST00000439765 ABCC9O60706 1549 aa38.22■■■■□ 3.71
CCDC188-201ENST00000439765 RB1CC1Q8TDY2 1594 aa36.61■■■■□ 3.45
CCDC188-201ENST00000439765 NACADO15069 1562 aa36.44■■■■□ 3.42
CCDC188-201ENST00000439765 MYO15BQ96JP2 1530 aa36.08■■■■□ 3.37
CCDC188-201ENST00000439765 DCAF8L2P0C7V8 631 aa36.02■■■■□ 3.36
CCDC188-201ENST00000439765 UNC13AQ9UPW8 1703 aa35.93■■■■□ 3.34
CCDC188-201ENST00000439765 ZCCHC6Q5VYS8 1495 aaKnown RBP35.81■■■■□ 3.32
CCDC188-201ENST00000439765 DCAF1Q9Y4B6 1507 aa35.69■■■■□ 3.3
CCDC188-201ENST00000439765 DNAJC5BQ9UF47 199 aa35.55■■■■□ 3.28
CCDC188-201ENST00000439765 BICRAQ9NZM4 1560 aa35.55■■■■□ 3.28
CCDC188-201ENST00000439765 PABPN1Q86U42 306 aaKnown RBP eCLIP35.53■■■■□ 3.28
CCDC188-201ENST00000439765 SHROOM4Q9ULL8 1493 aa35.15■■■■□ 3.22
CCDC188-201ENST00000439765 SCRIBQ14160 1630 aa35.14■■■■□ 3.22
CCDC188-201ENST00000439765 EIF4G1Q04637 1599 aaKnown RBP34.64■■■■□ 3.14
CCDC188-201ENST00000439765 CC2D2AQ9P2K1 1620 aa34.64■■■■□ 3.14
CCDC188-201ENST00000439765 CECR2Q9BXF3 1484 aa34.43■■■■□ 3.1
CCDC188-201ENST00000439765 SMARCA4P51532 1647 aa33.61■■■□□ 2.97
CCDC188-201ENST00000439765 NCAPD3P42695 1498 aa33.59■■■□□ 2.97
CCDC188-201ENST00000439765 ATAD2BQ9ULI0 1458 aa33.5■■■□□ 2.95
CCDC188-201ENST00000439765 SMARCA2P51531 1590 aa33.48■■■□□ 2.95
CCDC188-201ENST00000439765 BAZ1AQ9NRL2 1556 aaPredicted RBP33.47■■■□□ 2.95
CCDC188-201ENST00000439765 HMGXB3Q12766 1538 aa33.42■■■□□ 2.94
CCDC188-201ENST00000439765 PEG3Q9GZU2 1588 aa33.32■■■□□ 2.92
CCDC188-201ENST00000439765 BAZ1BQ9UIG0 1483 aaKnown RBP33.2■■■□□ 2.91
CCDC188-201ENST00000439765 MROH2BQ7Z745 1585 aa33.19■■■□□ 2.9
CCDC188-201ENST00000439765 ERCC6Q03468 1493 aa32.98■■■□□ 2.87
CCDC188-201ENST00000439765 NESP48681 1621 aa32.93■■■□□ 2.86
CCDC188-201ENST00000439765 CUX2O14529 1486 aa32.91■■■□□ 2.86
CCDC188-201ENST00000439765 LAMC3Q9Y6N6 1575 aa32.85■■■□□ 2.85
CCDC188-201ENST00000439765 WIZO95785 1651 aa32.85■■■□□ 2.85
CCDC188-201ENST00000439765 RSF1Q96T23 1441 aaPredicted RBP32.7■■■□□ 2.83
CCDC188-201ENST00000439765 THOC2Q8NI27 1593 aaKnown RBP32.66■■■□□ 2.82
CCDC188-201ENST00000439765 KIF21AQ7Z4S6 1674 aa32.65■■■□□ 2.82
CCDC188-201ENST00000439765 PDS5BQ9NTI5 1447 aa32.55■■■□□ 2.8
CCDC188-201ENST00000439765 CADPSQ9ULU8 1353 aa32.53■■■□□ 2.8
CCDC188-201ENST00000439765 DNAJC5Q9H3Z4 198 aa32.49■■■□□ 2.79
CCDC188-201ENST00000439765 TOP2AP11388 1531 aaKnown RBP32.46■■■□□ 2.79
CCDC188-201ENST00000439765 MRC2Q9UBG0 1479 aa32.29■■■□□ 2.76
CCDC188-201ENST00000439765 CFTRP13569 1480 aa32.26■■■□□ 2.76
CCDC188-201ENST00000439765 WDR62O43379 1518 aa32.25■■■□□ 2.75
CCDC188-201ENST00000439765 CEP164Q9UPV0 1460 aa32.21■■■□□ 2.75
CCDC188-201ENST00000439765 PRDM2Q13029 1718 aa32.18■■■□□ 2.74
CCDC188-201ENST00000439765 FANCD2Q9BXW9 1451 aa32.17■■■□□ 2.74
CCDC188-201ENST00000439765 CCDC88BA6NC98 1476 aa32.01■■■□□ 2.71
CCDC188-201ENST00000439765 URB2Q14146 1524 aaKnown RBP31.91■■■□□ 2.7
CCDC188-201ENST00000439765 SUPT5HO00267 1087 aaKnown RBP31.91■■■□□ 2.7
CCDC188-201ENST00000439765 TOPBP1Q92547 1522 aa31.63■■■□□ 2.65
CCDC188-201ENST00000439765 ABCC8Q09428 1581 aa31.6■■■□□ 2.65
CCDC188-201ENST00000439765 DNMBPQ6XZF7 1577 aa31.57■■■□□ 2.64
CCDC188-201ENST00000439765 IFT140Q96RY7 1462 aa31.55■■■□□ 2.64
CCDC188-201ENST00000439765 ZNF608Q9ULD9 1512 aaPredicted RBP31.44■■■□□ 2.62
CCDC188-201ENST00000439765 EIF4G3O43432 1585 aaKnown RBP31.38■■■□□ 2.61
CCDC188-201ENST00000439765 TARBP1Q13395 1621 aaKnown RBP31.38■■■□□ 2.61
CCDC188-201ENST00000439765 OSCARQ8IYS5 282 aa31.34■■■□□ 2.61
CCDC188-201ENST00000439765 POLA1P09884 1462 aaPredicted RBP31.32■■■□□ 2.6
CCDC188-201ENST00000439765 CUX1P39880 1505 aa31.18■■■□□ 2.58
CCDC188-201ENST00000439765 AQRO60306 1485 aaKnown RBP eCLIP31.17■■■□□ 2.58
CCDC188-201ENST00000439765 FGD5Q6ZNL6 1462 aa31.15■■■□□ 2.58
CCDC188-201ENST00000439765 CHD1O14646 1710 aa31.15■■■□□ 2.58
CCDC188-201ENST00000439765 WDR97A6NE52 1622 aa31.14■■■□□ 2.58
CCDC188-201ENST00000439765 RAD54L2Q9Y4B4 1467 aa31.14■■■□□ 2.57
CCDC188-201ENST00000439765 SOGA1O94964 1423 aa31.11■■■□□ 2.57
CCDC188-201ENST00000439765 TRIM41Q8WV44 630 aa31.08■■■□□ 2.57
CCDC188-201ENST00000439765 RIMBP3CA6NJZ7 1639 aa31.04■■■□□ 2.56
CCDC188-201ENST00000439765 RIMBP3BA6NNM3 1639 aa31.04■■■□□ 2.56
CCDC188-201ENST00000439765 RIMBP3Q9UFD9 1639 aa31.04■■■□□ 2.56
CCDC188-201ENST00000439765 TDRD9Q8NDG6 1382 aaKnown RBP30.99■■■□□ 2.55
CCDC188-201ENST00000439765 ARHGEF11O15085 1522 aa30.93■■■□□ 2.54
CCDC188-201ENST00000439765 SNAPC4Q5SXM2 1469 aa30.9■■■□□ 2.54
CCDC188-201ENST00000439765 PBRM1Q86U86 1689 aa30.89■■■□□ 2.53
CCDC188-201ENST00000439765 MAGI1Q96QZ7 1491 aaPredicted RBP30.88■■■□□ 2.53
CCDC188-201ENST00000439765 SYNJ1O43426 1573 aa30.87■■■□□ 2.53
CCDC188-201ENST00000439765 BIVM-ERCC5R4GMW8 1640 aa30.87■■■□□ 2.53
CCDC188-201ENST00000439765 GRIN2BQ13224 1484 aa30.87■■■□□ 2.53
CCDC188-201ENST00000439765 WRNQ14191 1432 aaPredicted RBP eCLIP30.85■■■□□ 2.53
CCDC188-201ENST00000439765 ABCA10Q8WWZ4 1543 aa30.84■■■□□ 2.53
CCDC188-201ENST00000439765 TOP2BQ02880 1626 aa30.84■■■□□ 2.53
CCDC188-201ENST00000439765 ABCA5Q8WWZ7 1642 aa30.83■■■□□ 2.53
CCDC188-201ENST00000439765 FBLN2P98095 1184 aa30.81■■■□□ 2.52
CCDC188-201ENST00000439765 GAPVD1Q14C86 1478 aa30.78■■■□□ 2.52
CCDC188-201ENST00000439765 SYNJ2O15056 1496 aa30.75■■■□□ 2.51
CCDC188-201ENST00000439765 CLASP1Q7Z460 1538 aa30.74■■■□□ 2.51
CCDC188-201ENST00000439765 CHMP7Q8WUX9 453 aaPredicted RBP30.68■■■□□ 2.5
CCDC188-201ENST00000439765 ARAP1Q96P48 1450 aa30.64■■■□□ 2.49
CCDC188-201ENST00000439765 ADAMTS12P58397 1594 aa30.56■■■□□ 2.48
CCDC188-201ENST00000439765 CYB5RLQ6IPT4 315 aa30.55■■■□□ 2.48
CCDC188-201ENST00000439765 GRIN2AQ12879 1464 aa30.49■■■□□ 2.47
CCDC188-201ENST00000439765 ERICH3Q5RHP9 1530 aa30.48■■■□□ 2.47
CCDC188-201ENST00000439765 FHAD1B1AJZ9 1412 aa30.41■■■□□ 2.46
CCDC188-201ENST00000439765 CEP170Q5SW79 1584 aa30.38■■■□□ 2.45
CCDC188-201ENST00000439765 NUP160Q12769 1436 aa30.38■■■□□ 2.45
CCDC188-201ENST00000439765 SHROOM2Q13796 1616 aa30.3■■■□□ 2.44
CCDC188-201ENST00000439765 ERCC6L2Q5T890 1561 aa30.23■■■□□ 2.43
CCDC188-201ENST00000439765 KIF27Q86VH2 1401 aa30.18■■■□□ 2.42
CCDC188-201ENST00000439765 CUL7Q14999 1698 aa30.14■■■□□ 2.41
CCDC188-201ENST00000439765 RUSC2Q8N2Y8 1516 aa30.13■■■□□ 2.41
CCDC188-201ENST00000439765 TRHP20396 242 aaPredicted RBP30.09■■■□□ 2.41
CCDC188-201ENST00000439765 IGF1RP08069 1367 aa30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms