RNA–Protein interactions for RNA: ENST00000439487.5

SEMA3B-206, Transcript of semaphorin 3B, humanhuman

TSL 3

Gene SEMA3B, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-206ENST00000439487 NISCHQ9Y2I1 1504 aa47.02■■■■■ 5.12
SEMA3B-206ENST00000439487 CCDC180Q9P1Z9 1646 aa41.75■■■■■ 4.27
SEMA3B-206ENST00000439487 ABCC9O60706 1549 aa40.72■■■■■ 4.11
SEMA3B-206ENST00000439487 DCAF8L2P0C7V8 631 aa39.29■■■■□ 3.88
SEMA3B-206ENST00000439487 RB1CC1Q8TDY2 1594 aa39.21■■■■□ 3.87
SEMA3B-206ENST00000439487 ZCCHC6Q5VYS8 1495 aaKnown RBP39.18■■■■□ 3.86
SEMA3B-206ENST00000439487 NACADO15069 1562 aa39.18■■■■□ 3.86
SEMA3B-206ENST00000439487 MYO15BQ96JP2 1530 aa38.94■■■■□ 3.82
SEMA3B-206ENST00000439487 DCAF1Q9Y4B6 1507 aa38.86■■■■□ 3.81
SEMA3B-206ENST00000439487 UNC13AQ9UPW8 1703 aa38.46■■■■□ 3.75
SEMA3B-206ENST00000439487 SCRIBQ14160 1630 aa38.15■■■■□ 3.7
SEMA3B-206ENST00000439487 PABPN1Q86U42 306 aaKnown RBP eCLIP38.09■■■■□ 3.693e-11■□□□□ 9.2
SEMA3B-206ENST00000439487 BICRAQ9NZM4 1560 aa38.05■■■■□ 3.68
SEMA3B-206ENST00000439487 DNAJC5BQ9UF47 199 aa37.69■■■■□ 3.62
SEMA3B-206ENST00000439487 SHROOM4Q9ULL8 1493 aa37.54■■■■□ 3.6
SEMA3B-206ENST00000439487 EIF4G1Q04637 1599 aaKnown RBP37.01■■■■□ 3.52
SEMA3B-206ENST00000439487 CC2D2AQ9P2K1 1620 aa36.85■■■■□ 3.49
SEMA3B-206ENST00000439487 CECR2Q9BXF3 1484 aa36.65■■■■□ 3.46
SEMA3B-206ENST00000439487 SMARCA4P51532 1647 aa36.48■■■■□ 3.43
SEMA3B-206ENST00000439487 BAZ1AQ9NRL2 1556 aaPredicted RBP36.42■■■■□ 3.42
SEMA3B-206ENST00000439487 MROH2BQ7Z745 1585 aa36.27■■■■□ 3.4
SEMA3B-206ENST00000439487 ATAD2BQ9ULI0 1458 aa36.21■■■■□ 3.39
SEMA3B-206ENST00000439487 SMARCA2P51531 1590 aa36.16■■■■□ 3.38
SEMA3B-206ENST00000439487 NCAPD3P42695 1498 aa36.13■■■■□ 3.37
SEMA3B-206ENST00000439487 PEG3Q9GZU2 1588 aa36.06■■■■□ 3.36
SEMA3B-206ENST00000439487 HMGXB3Q12766 1538 aa35.98■■■■□ 3.35
SEMA3B-206ENST00000439487 WIZO95785 1651 aa35.94■■■■□ 3.34
SEMA3B-206ENST00000439487 BAZ1BQ9UIG0 1483 aaKnown RBP35.92■■■■□ 3.34
SEMA3B-206ENST00000439487 RSF1Q96T23 1441 aaPredicted RBP35.89■■■■□ 3.34
SEMA3B-206ENST00000439487 TOP2AP11388 1531 aaKnown RBP35.49■■■■□ 3.27
SEMA3B-206ENST00000439487 NESP48681 1621 aa35.3■■■■□ 3.24
SEMA3B-206ENST00000439487 DNAJC5Q9H3Z4 198 aa35.26■■■■□ 3.24
SEMA3B-206ENST00000439487 LAMC3Q9Y6N6 1575 aa35.18■■■■□ 3.22
SEMA3B-206ENST00000439487 SUPT5HO00267 1087 aaKnown RBP35.17■■■■□ 3.22
SEMA3B-206ENST00000439487 CADPSQ9ULU8 1353 aa35.11■■■■□ 3.21
SEMA3B-206ENST00000439487 CCDC88BA6NC98 1476 aa35.09■■■■□ 3.21
SEMA3B-206ENST00000439487 ERCC6Q03468 1493 aa35.06■■■■□ 3.2
SEMA3B-206ENST00000439487 KIF21AQ7Z4S6 1674 aa34.93■■■■□ 3.18
SEMA3B-206ENST00000439487 CFTRP13569 1480 aa34.92■■■■□ 3.18
SEMA3B-206ENST00000439487 PDS5BQ9NTI5 1447 aa34.92■■■■□ 3.18
SEMA3B-206ENST00000439487 PRDM2Q13029 1718 aa34.8■■■■□ 3.16
SEMA3B-206ENST00000439487 FANCD2Q9BXW9 1451 aa34.72■■■■□ 3.15
SEMA3B-206ENST00000439487 THOC2Q8NI27 1593 aaKnown RBP34.71■■■■□ 3.15
SEMA3B-206ENST00000439487 CEP164Q9UPV0 1460 aa34.65■■■■□ 3.14
SEMA3B-206ENST00000439487 CUX2O14529 1486 aa34.59■■■■□ 3.13
SEMA3B-206ENST00000439487 MRC2Q9UBG0 1479 aa34.57■■■■□ 3.12
SEMA3B-206ENST00000439487 WDR62O43379 1518 aa34.45■■■■□ 3.11
SEMA3B-206ENST00000439487 URB2Q14146 1524 aaKnown RBP34.39■■■■□ 3.1
SEMA3B-206ENST00000439487 TOPBP1Q92547 1522 aa34.2■■■■□ 3.06
SEMA3B-206ENST00000439487 DNMBPQ6XZF7 1577 aa34.17■■■■□ 3.06
SEMA3B-206ENST00000439487 ABCC8Q09428 1581 aa34.16■■■■□ 3.06
SEMA3B-206ENST00000439487 CUX1P39880 1505 aa34.01■■■■□ 3.04
SEMA3B-206ENST00000439487 POLA1P09884 1462 aaPredicted RBP33.91■■■■□ 3.02
SEMA3B-206ENST00000439487 IFT140Q96RY7 1462 aa33.91■■■■□ 3.02
SEMA3B-206ENST00000439487 FGD5Q6ZNL6 1462 aa33.86■■■■□ 3.01
SEMA3B-206ENST00000439487 TARBP1Q13395 1621 aaKnown RBP33.82■■■■□ 3.01
SEMA3B-206ENST00000439487 WRNQ14191 1432 aaPredicted RBP eCLIP33.82■■■■□ 3
SEMA3B-206ENST00000439487 RAD54L2Q9Y4B4 1467 aa33.8■■■■□ 3
SEMA3B-206ENST00000439487 ZNF608Q9ULD9 1512 aaPredicted RBP33.79■■■■□ 3
SEMA3B-206ENST00000439487 SYNJ1O43426 1573 aa33.78■■■■□ 3
SEMA3B-206ENST00000439487 BIVM-ERCC5R4GMW8 1640 aa33.78■■■■□ 3
SEMA3B-206ENST00000439487 SOGA1O94964 1423 aa33.78■■■■□ 3
SEMA3B-206ENST00000439487 TOP2BQ02880 1626 aa33.75■■■□□ 2.99
SEMA3B-206ENST00000439487 EIF4G3O43432 1585 aaKnown RBP33.67■■■□□ 2.98
SEMA3B-206ENST00000439487 AQRO60306 1485 aaKnown RBP eCLIP33.63■■■□□ 2.972e-43■■■■■ 27.1
SEMA3B-206ENST00000439487 WDR97A6NE52 1622 aa33.61■■■□□ 2.97
SEMA3B-206ENST00000439487 TDRD9Q8NDG6 1382 aaKnown RBP33.59■■■□□ 2.97
SEMA3B-206ENST00000439487 ABCA10Q8WWZ4 1543 aa33.52■■■□□ 2.96
SEMA3B-206ENST00000439487 ABCA5Q8WWZ7 1642 aa33.4■■■□□ 2.94
SEMA3B-206ENST00000439487 GAPVD1Q14C86 1478 aa33.39■■■□□ 2.94
SEMA3B-206ENST00000439487 PBRM1Q86U86 1689 aa33.39■■■□□ 2.94
SEMA3B-206ENST00000439487 GRIN2BQ13224 1484 aa33.34■■■□□ 2.93
SEMA3B-206ENST00000439487 SNAPC4Q5SXM2 1469 aa33.31■■■□□ 2.92
SEMA3B-206ENST00000439487 CHD1O14646 1710 aa33.28■■■□□ 2.92
SEMA3B-206ENST00000439487 TRIM41Q8WV44 630 aa33.23■■■□□ 2.91
SEMA3B-206ENST00000439487 MAGI1Q96QZ7 1491 aaPredicted RBP33.23■■■□□ 2.91
SEMA3B-206ENST00000439487 OSCARQ8IYS5 282 aa33.22■■■□□ 2.91
SEMA3B-206ENST00000439487 FBLN2P98095 1184 aa33.2■■■□□ 2.91
SEMA3B-206ENST00000439487 ERICH3Q5RHP9 1530 aa33.12■■■□□ 2.89
SEMA3B-206ENST00000439487 CHMP7Q8WUX9 453 aaPredicted RBP33.11■■■□□ 2.89
SEMA3B-206ENST00000439487 SYNJ2O15056 1496 aa33.11■■■□□ 2.89
SEMA3B-206ENST00000439487 KIF27Q86VH2 1401 aa33.1■■■□□ 2.89
SEMA3B-206ENST00000439487 ADAMTS12P58397 1594 aa33.07■■■□□ 2.88
SEMA3B-206ENST00000439487 FHAD1B1AJZ9 1412 aa32.99■■■□□ 2.87
SEMA3B-206ENST00000439487 IGF1RP08069 1367 aa32.96■■■□□ 2.87
SEMA3B-206ENST00000439487 RUSC2Q8N2Y8 1516 aa32.93■■■□□ 2.86
SEMA3B-206ENST00000439487 GRIN2AQ12879 1464 aa32.93■■■□□ 2.86
SEMA3B-206ENST00000439487 CHIC1Q5VXU3 224 aa32.89■■■□□ 2.86
SEMA3B-206ENST00000439487 CUL7Q14999 1698 aa32.88■■■□□ 2.85
SEMA3B-206ENST00000439487 CLASP1Q7Z460 1538 aa32.83■■■□□ 2.85
SEMA3B-206ENST00000439487 CEP170Q5SW79 1584 aa32.79■■■□□ 2.84
SEMA3B-206ENST00000439487 CARMIL1Q5VZK9 1371 aa32.77■■■□□ 2.84
SEMA3B-206ENST00000439487 NUP160Q12769 1436 aa32.76■■■□□ 2.83
SEMA3B-206ENST00000439487 RIMBP3CA6NJZ7 1639 aa32.73■■■□□ 2.83
SEMA3B-206ENST00000439487 RIMBP3BA6NNM3 1639 aa32.73■■■□□ 2.83
SEMA3B-206ENST00000439487 RIMBP3Q9UFD9 1639 aa32.73■■■□□ 2.83
SEMA3B-206ENST00000439487 ARHGEF11O15085 1522 aa32.69■■■□□ 2.82
SEMA3B-206ENST00000439487 RAPGEF2Q9Y4G8 1499 aa32.59■■■□□ 2.81
SEMA3B-206ENST00000439487 EEA1Q15075 1411 aa32.54■■■□□ 2.8
SEMA3B-206ENST00000439487 CSRNP3Q8WYN3 585 aa32.54■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms