RNA–Protein interactions for RNA: ENST00000438571.5

GTF3A-204, Transcript of general transcription factor IIIA, humanhuman

TSL 5

Gene GTF3A, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-204ENST00000438571 NISCHQ9Y2I1 1504 aa45.81■■■■■ 4.92
GTF3A-204ENST00000438571 CCDC180Q9P1Z9 1646 aa41.18■■■■■ 4.18
GTF3A-204ENST00000438571 ABCC9O60706 1549 aa41.06■■■■■ 4.16
GTF3A-204ENST00000438571 RB1CC1Q8TDY2 1594 aa39.08■■■■□ 3.85
GTF3A-204ENST00000438571 NACADO15069 1562 aa38.79■■■■□ 3.8
GTF3A-204ENST00000438571 UNC13AQ9UPW8 1703 aa38.51■■■■□ 3.76
GTF3A-204ENST00000438571 DCAF8L2P0C7V8 631 aa38.5■■■■□ 3.75
GTF3A-204ENST00000438571 DNAJC5BQ9UF47 199 aa38.42■■■■□ 3.74
GTF3A-204ENST00000438571 MYO15BQ96JP2 1530 aa38.22■■■■□ 3.71
GTF3A-204ENST00000438571 PABPN1Q86U42 306 aaKnown RBP eCLIP38.16■■■■□ 3.7
GTF3A-204ENST00000438571 BICRAQ9NZM4 1560 aa38.06■■■■□ 3.68
GTF3A-204ENST00000438571 ZCCHC6Q5VYS8 1495 aaKnown RBP38.02■■■■□ 3.68
GTF3A-204ENST00000438571 DCAF1Q9Y4B6 1507 aa37.8■■■■□ 3.64
GTF3A-204ENST00000438571 SCRIBQ14160 1630 aa37.56■■■■□ 3.6
GTF3A-204ENST00000438571 SHROOM4Q9ULL8 1493 aa37.33■■■■□ 3.57
GTF3A-204ENST00000438571 CC2D2AQ9P2K1 1620 aa37.15■■■■□ 3.54
GTF3A-204ENST00000438571 EIF4G1Q04637 1599 aaKnown RBP37.06■■■■□ 3.52
GTF3A-204ENST00000438571 CECR2Q9BXF3 1484 aa36.92■■■■□ 3.5
GTF3A-204ENST00000438571 SMARCA4P51532 1647 aa35.81■■■■□ 3.32
GTF3A-204ENST00000438571 NCAPD3P42695 1498 aa35.76■■■■□ 3.32
GTF3A-204ENST00000438571 ATAD2BQ9ULI0 1458 aa35.73■■■■□ 3.31
GTF3A-204ENST00000438571 SMARCA2P51531 1590 aa35.61■■■■□ 3.29
GTF3A-204ENST00000438571 HMGXB3Q12766 1538 aa35.59■■■■□ 3.29
GTF3A-204ENST00000438571 BAZ1AQ9NRL2 1556 aaPredicted RBP35.55■■■■□ 3.28
GTF3A-204ENST00000438571 PEG3Q9GZU2 1588 aa35.4■■■■□ 3.26
GTF3A-204ENST00000438571 BAZ1BQ9UIG0 1483 aaKnown RBP35.38■■■■□ 3.25
GTF3A-204ENST00000438571 ERCC6Q03468 1493 aa35.36■■■■□ 3.25
GTF3A-204ENST00000438571 MROH2BQ7Z745 1585 aa35.36■■■■□ 3.25
GTF3A-204ENST00000438571 NESP48681 1621 aa35.34■■■■□ 3.25
GTF3A-204ENST00000438571 CUX2O14529 1486 aa35.28■■■■□ 3.24
GTF3A-204ENST00000438571 DNAJC5Q9H3Z4 198 aa35.1■■■■□ 3.21
GTF3A-204ENST00000438571 LAMC3Q9Y6N6 1575 aa35.04■■■■□ 3.2
GTF3A-204ENST00000438571 WIZO95785 1651 aa35.03■■■■□ 3.2
GTF3A-204ENST00000438571 THOC2Q8NI27 1593 aaKnown RBP35.03■■■■□ 3.2
GTF3A-204ENST00000438571 KIF21AQ7Z4S6 1674 aa35.01■■■■□ 3.19
GTF3A-204ENST00000438571 PDS5BQ9NTI5 1447 aa34.7■■■■□ 3.15
GTF3A-204ENST00000438571 CADPSQ9ULU8 1353 aa34.66■■■■□ 3.14
GTF3A-204ENST00000438571 RSF1Q96T23 1441 aaPredicted RBP34.55■■■■□ 3.12
GTF3A-204ENST00000438571 MRC2Q9UBG0 1479 aa34.5■■■■□ 3.11
GTF3A-204ENST00000438571 TOP2AP11388 1531 aaKnown RBP34.49■■■■□ 3.11
GTF3A-204ENST00000438571 WDR62O43379 1518 aa34.46■■■■□ 3.11
GTF3A-204ENST00000438571 CEP164Q9UPV0 1460 aa34.38■■■■□ 3.09
GTF3A-204ENST00000438571 FANCD2Q9BXW9 1451 aa34.34■■■■□ 3.09
GTF3A-204ENST00000438571 CFTRP13569 1480 aa34.33■■■■□ 3.09
GTF3A-204ENST00000438571 PRDM2Q13029 1718 aa34.27■■■■□ 3.08
GTF3A-204ENST00000438571 URB2Q14146 1524 aaKnown RBP34.12■■■■□ 3.05
GTF3A-204ENST00000438571 CCDC88BA6NC98 1476 aa34.05■■■■□ 3.04
GTF3A-204ENST00000438571 TOPBP1Q92547 1522 aa33.74■■■□□ 2.99
GTF3A-204ENST00000438571 ZNF608Q9ULD9 1512 aaPredicted RBP33.69■■■□□ 2.98
GTF3A-204ENST00000438571 TRIM41Q8WV44 630 aa33.66■■■□□ 2.98
GTF3A-204ENST00000438571 IFT140Q96RY7 1462 aa33.64■■■□□ 2.98
GTF3A-204ENST00000438571 DNMBPQ6XZF7 1577 aa33.64■■■□□ 2.98
GTF3A-204ENST00000438571 EIF4G3O43432 1585 aaKnown RBP33.58■■■□□ 2.97
GTF3A-204ENST00000438571 OSCARQ8IYS5 282 aa33.55■■■□□ 2.96
GTF3A-204ENST00000438571 ABCC8Q09428 1581 aa33.53■■■□□ 2.96
GTF3A-204ENST00000438571 TARBP1Q13395 1621 aaKnown RBP33.5■■■□□ 2.95
GTF3A-204ENST00000438571 CHD1O14646 1710 aa33.41■■■□□ 2.94
GTF3A-204ENST00000438571 RIMBP3CA6NJZ7 1639 aa33.39■■■□□ 2.94
GTF3A-204ENST00000438571 RIMBP3BA6NNM3 1639 aa33.39■■■□□ 2.94
GTF3A-204ENST00000438571 RIMBP3Q9UFD9 1639 aa33.39■■■□□ 2.94
GTF3A-204ENST00000438571 POLA1P09884 1462 aaPredicted RBP33.39■■■□□ 2.94
GTF3A-204ENST00000438571 AQRO60306 1485 aaKnown RBP eCLIP33.34■■■□□ 2.936e-7■■■■□ 20.5
GTF3A-204ENST00000438571 RAD54L2Q9Y4B4 1467 aa33.29■■■□□ 2.92
GTF3A-204ENST00000438571 ARHGEF11O15085 1522 aa33.22■■■□□ 2.91
GTF3A-204ENST00000438571 CUX1P39880 1505 aa33.22■■■□□ 2.91
GTF3A-204ENST00000438571 FGD5Q6ZNL6 1462 aa33.21■■■□□ 2.91
GTF3A-204ENST00000438571 SOGA1O94964 1423 aa33.15■■■□□ 2.9
GTF3A-204ENST00000438571 WDR97A6NE52 1622 aa33.13■■■□□ 2.89
GTF3A-204ENST00000438571 TDRD9Q8NDG6 1382 aaKnown RBP33.1■■■□□ 2.89
GTF3A-204ENST00000438571 SNAPC4Q5SXM2 1469 aa33.04■■■□□ 2.88
GTF3A-204ENST00000438571 SUPT5HO00267 1087 aaKnown RBP33.02■■■□□ 2.88
GTF3A-204ENST00000438571 PBRM1Q86U86 1689 aa33.01■■■□□ 2.87
GTF3A-204ENST00000438571 FBLN2P98095 1184 aa33■■■□□ 2.87
GTF3A-204ENST00000438571 ARAP1Q96P48 1450 aa32.92■■■□□ 2.86
GTF3A-204ENST00000438571 CLASP1Q7Z460 1538 aa32.89■■■□□ 2.86
GTF3A-204ENST00000438571 MAGI1Q96QZ7 1491 aaPredicted RBP32.88■■■□□ 2.85
GTF3A-204ENST00000438571 GRIN2BQ13224 1484 aa32.87■■■□□ 2.85
GTF3A-204ENST00000438571 ABCA5Q8WWZ7 1642 aa32.86■■■□□ 2.85
GTF3A-204ENST00000438571 CYB5RLQ6IPT4 315 aa32.83■■■□□ 2.85
GTF3A-204ENST00000438571 SYNJ1O43426 1573 aa32.82■■■□□ 2.84
GTF3A-204ENST00000438571 ABCA10Q8WWZ4 1543 aa32.79■■■□□ 2.84
GTF3A-204ENST00000438571 GAPVD1Q14C86 1478 aa32.79■■■□□ 2.84
GTF3A-204ENST00000438571 SYNJ2O15056 1496 aa32.78■■■□□ 2.84
GTF3A-204ENST00000438571 BIVM-ERCC5R4GMW8 1640 aa32.77■■■□□ 2.84
GTF3A-204ENST00000438571 CHMP7Q8WUX9 453 aaPredicted RBP32.73■■■□□ 2.83
GTF3A-204ENST00000438571 TOP2BQ02880 1626 aa32.69■■■□□ 2.82
GTF3A-204ENST00000438571 ADAMTS12P58397 1594 aa32.6■■■□□ 2.81
GTF3A-204ENST00000438571 WRNQ14191 1432 aaPredicted RBP eCLIP32.59■■■□□ 2.81
GTF3A-204ENST00000438571 GRIN2AQ12879 1464 aa32.5■■■□□ 2.79
GTF3A-204ENST00000438571 CEP170Q5SW79 1584 aa32.49■■■□□ 2.79
GTF3A-204ENST00000438571 ERCC6L2Q5T890 1561 aa32.46■■■□□ 2.79
GTF3A-204ENST00000438571 TRHP20396 242 aaPredicted RBP32.42■■■□□ 2.78
GTF3A-204ENST00000438571 ERICH3Q5RHP9 1530 aa32.37■■■□□ 2.77
GTF3A-204ENST00000438571 NUP160Q12769 1436 aa32.37■■■□□ 2.77
GTF3A-204ENST00000438571 FHAD1B1AJZ9 1412 aa32.34■■■□□ 2.77
GTF3A-204ENST00000438571 SHROOM2Q13796 1616 aa32.33■■■□□ 2.77
GTF3A-204ENST00000438571 RUSC2Q8N2Y8 1516 aa32.15■■■□□ 2.74
GTF3A-204ENST00000438571 PRG4Q92954 1404 aaPredicted RBP32.02■■■□□ 2.72
GTF3A-204ENST00000438571 CUL7Q14999 1698 aa32■■■□□ 2.71
GTF3A-204ENST00000438571 KIF13AQ9H1H9 1805 aa31.98■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms