RNA–Protein interactions for RNA: ENST00000436630.6

RPE-208, Transcript of ribulose-5-phosphate-3-epimerase, humanhuman

TSL 2 BASIC

Gene RPE, Length 1,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPE-208ENST00000436630 NISCHQ9Y2I1 1504 aa31.49■■■□□ 2.63
RPE-208ENST00000436630 CCDC180Q9P1Z9 1646 aa27.86■■■□□ 2.05
RPE-208ENST00000436630 ABCC9O60706 1549 aa26.44■■□□□ 1.82
RPE-208ENST00000436630 ZCCHC6Q5VYS8 1495 aaKnown RBP26.41■■□□□ 1.82
RPE-208ENST00000436630 DCAF1Q9Y4B6 1507 aa26.19■■□□□ 1.78
RPE-208ENST00000436630 MYO15BQ96JP2 1530 aa26.08■■□□□ 1.77
RPE-208ENST00000436630 NACADO15069 1562 aa25.99■■□□□ 1.75
RPE-208ENST00000436630 RB1CC1Q8TDY2 1594 aa25.86■■□□□ 1.73
RPE-208ENST00000436630 DCAF8L2P0C7V8 631 aa25.85■■□□□ 1.73
RPE-208ENST00000436630 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
RPE-208ENST00000436630 UNC13AQ9UPW8 1703 aa25.27■■□□□ 1.64
RPE-208ENST00000436630 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
RPE-208ENST00000436630 BICRAQ9NZM4 1560 aa24.97■■□□□ 1.59
RPE-208ENST00000436630 PABPN1Q86U42 306 aaKnown RBP eCLIP24.71■■□□□ 1.55
RPE-208ENST00000436630 BAZ1AQ9NRL2 1556 aaPredicted RBP24.42■■□□□ 1.5
RPE-208ENST00000436630 CECR2Q9BXF3 1484 aa24.37■■□□□ 1.49
RPE-208ENST00000436630 SMARCA4P51532 1647 aa24.34■■□□□ 1.49
RPE-208ENST00000436630 EIF4G1Q04637 1599 aaKnown RBP24.29■■□□□ 1.48
RPE-208ENST00000436630 MROH2BQ7Z745 1585 aa24.23■■□□□ 1.47
RPE-208ENST00000436630 RSF1Q96T23 1441 aaPredicted RBP24.18■■□□□ 1.46
RPE-208ENST00000436630 PEG3Q9GZU2 1588 aa24.13■■□□□ 1.45
RPE-208ENST00000436630 SMARCA2P51531 1590 aa24.08■■□□□ 1.45
RPE-208ENST00000436630 CC2D2AQ9P2K1 1620 aa24.02■■□□□ 1.44
RPE-208ENST00000436630 WIZO95785 1651 aa24.02■■□□□ 1.44
RPE-208ENST00000436630 DNAJC5BQ9UF47 199 aa24■■□□□ 1.43
RPE-208ENST00000436630 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
RPE-208ENST00000436630 HMGXB3Q12766 1538 aa23.93■■□□□ 1.42
RPE-208ENST00000436630 SUPT5HO00267 1087 aaKnown RBP23.92■■□□□ 1.42
RPE-208ENST00000436630 NCAPD3P42695 1498 aa23.9■■□□□ 1.42
RPE-208ENST00000436630 TOP2AP11388 1531 aaKnown RBP23.88■■□□□ 1.41
RPE-208ENST00000436630 BAZ1BQ9UIG0 1483 aaKnown RBP23.87■■□□□ 1.41
RPE-208ENST00000436630 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
RPE-208ENST00000436630 PRDM2Q13029 1718 aa23.28■■□□□ 1.32
RPE-208ENST00000436630 LAMC3Q9Y6N6 1575 aa23.24■■□□□ 1.31
RPE-208ENST00000436630 CFTRP13569 1480 aa23.24■■□□□ 1.31
RPE-208ENST00000436630 CADPSQ9ULU8 1353 aa23.21■■□□□ 1.31
RPE-208ENST00000436630 NESP48681 1621 aa23.05■■□□□ 1.28
RPE-208ENST00000436630 PDS5BQ9NTI5 1447 aa23.01■■□□□ 1.27
RPE-208ENST00000436630 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
RPE-208ENST00000436630 CEP164Q9UPV0 1460 aa22.92■■□□□ 1.26
RPE-208ENST00000436630 KIF21AQ7Z4S6 1674 aa22.91■■□□□ 1.26
RPE-208ENST00000436630 ABCC8Q09428 1581 aa22.83■■□□□ 1.25
RPE-208ENST00000436630 WRNQ14191 1432 aaPredicted RBP eCLIP22.82■■□□□ 1.24
RPE-208ENST00000436630 ERCC6Q03468 1493 aa22.81■■□□□ 1.24
RPE-208ENST00000436630 BIVM-ERCC5R4GMW8 1640 aa22.78■■□□□ 1.24
RPE-208ENST00000436630 DNMBPQ6XZF7 1577 aa22.76■■□□□ 1.23
RPE-208ENST00000436630 TOP2BQ02880 1626 aa22.75■■□□□ 1.23
RPE-208ENST00000436630 MRC2Q9UBG0 1479 aa22.75■■□□□ 1.23
RPE-208ENST00000436630 SYNJ1O43426 1573 aa22.73■■□□□ 1.23
RPE-208ENST00000436630 CUX1P39880 1505 aa22.72■■□□□ 1.23
RPE-208ENST00000436630 CHIC1Q5VXU3 224 aa22.71■■□□□ 1.23
RPE-208ENST00000436630 THOC2Q8NI27 1593 aaKnown RBP22.7■■□□□ 1.22
RPE-208ENST00000436630 WDR62O43379 1518 aa22.67■■□□□ 1.22
RPE-208ENST00000436630 URB2Q14146 1524 aaKnown RBP22.67■■□□□ 1.22
RPE-208ENST00000436630 TOPBP1Q92547 1522 aa22.67■■□□□ 1.22
RPE-208ENST00000436630 TRIM41Q8WV44 630 aa22.63■■□□□ 1.21
RPE-208ENST00000436630 FGD5Q6ZNL6 1462 aa22.55■■□□□ 1.2
RPE-208ENST00000436630 POLA1P09884 1462 aaPredicted RBP22.52■■□□□ 1.2
RPE-208ENST00000436630 WDR97A6NE52 1622 aa22.43■■□□□ 1.18
RPE-208ENST00000436630 ABCA10Q8WWZ4 1543 aa22.41■■□□□ 1.18
RPE-208ENST00000436630 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
RPE-208ENST00000436630 TARBP1Q13395 1621 aaKnown RBP22.4■■□□□ 1.18
RPE-208ENST00000436630 CUX2O14529 1486 aa22.4■■□□□ 1.18
RPE-208ENST00000436630 SOGA1O94964 1423 aa22.4■■□□□ 1.18
RPE-208ENST00000436630 EEA1Q15075 1411 aa22.38■■□□□ 1.17
RPE-208ENST00000436630 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
RPE-208ENST00000436630 KIF27Q86VH2 1401 aa22.31■■□□□ 1.16
RPE-208ENST00000436630 ABCA5Q8WWZ7 1642 aa22.29■■□□□ 1.16
RPE-208ENST00000436630 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
RPE-208ENST00000436630 GAPVD1Q14C86 1478 aa22.2■■□□□ 1.14
RPE-208ENST00000436630 PBRM1Q86U86 1689 aa22.19■■□□□ 1.14
RPE-208ENST00000436630 ERICH3Q5RHP9 1530 aa22.18■■□□□ 1.14
RPE-208ENST00000436630 RUSC2Q8N2Y8 1516 aa22.16■■□□□ 1.14
RPE-208ENST00000436630 ZNF608Q9ULD9 1512 aaPredicted RBP22.16■■□□□ 1.14
RPE-208ENST00000436630 CUL7Q14999 1698 aa22.14■■□□□ 1.14
RPE-208ENST00000436630 TDRD9Q8NDG6 1382 aaKnown RBP22.13■■□□□ 1.13
RPE-208ENST00000436630 GRIN2BQ13224 1484 aa22.12■■□□□ 1.13
RPE-208ENST00000436630 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.132e-6■■□□□ 13.2
RPE-208ENST00000436630 KIF21BO75037 1637 aa22.09■■□□□ 1.13
RPE-208ENST00000436630 CSRNP3Q8WYN3 585 aa22.08■■□□□ 1.13
RPE-208ENST00000436630 IGF1RP08069 1367 aa22.05■■□□□ 1.12
RPE-208ENST00000436630 FAM9AQ8IZU1 332 aaPredicted RBP22.05■■□□□ 1.12
RPE-208ENST00000436630 MAGI1Q96QZ7 1491 aaPredicted RBP22.04■■□□□ 1.12
RPE-208ENST00000436630 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
RPE-208ENST00000436630 PRXQ9BXM0 1461 aa22.03■■□□□ 1.12
RPE-208ENST00000436630 SNAPC4Q5SXM2 1469 aa21.98■■□□□ 1.11
RPE-208ENST00000436630 FHAD1B1AJZ9 1412 aa21.97■■□□□ 1.11
RPE-208ENST00000436630 CARMIL1Q5VZK9 1371 aa21.97■■□□□ 1.11
RPE-208ENST00000436630 GOLGA3Q08378 1498 aa21.96■■□□□ 1.11
RPE-208ENST00000436630 RAPGEF2Q9Y4G8 1499 aa21.96■■□□□ 1.11
RPE-208ENST00000436630 SYNJ2O15056 1496 aa21.91■■□□□ 1.1
RPE-208ENST00000436630 GRIN2AQ12879 1464 aa21.84■■□□□ 1.09
RPE-208ENST00000436630 CTTNBP2Q8WZ74 1663 aa21.82■■□□□ 1.08
RPE-208ENST00000436630 CHD1O14646 1710 aa21.81■■□□□ 1.08
RPE-208ENST00000436630 TNIKQ9UKE5 1360 aa21.76■■□□□ 1.07
RPE-208ENST00000436630 CHMP7Q8WUX9 453 aaPredicted RBP21.75■■□□□ 1.07
RPE-208ENST00000436630 DNAJC5Q9H3Z4 198 aa21.73■■□□□ 1.07
RPE-208ENST00000436630 UBTFP17480 764 aaKnown RBP21.72■■□□□ 1.07
RPE-208ENST00000436630 NUP160Q12769 1436 aa21.72■■□□□ 1.07
RPE-208ENST00000436630 LOC105371045A0A1W2PR82 267 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms