RNA–Protein interactions for RNA: ENST00000436461.6

CALD1-209, Transcript of caldesmon 1, humanhuman

TSL 5

Gene CALD1, Length 1,614 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-209ENST00000436461 NISCHQ9Y2I1 1504 aa39.77■■■■□ 3.96
CALD1-209ENST00000436461 CCDC180Q9P1Z9 1646 aa35.07■■■■□ 3.2
CALD1-209ENST00000436461 ABCC9O60706 1549 aa33.9■■■■□ 3.02
CALD1-209ENST00000436461 ZCCHC6Q5VYS8 1495 aaKnown RBP33.25■■■□□ 2.91
CALD1-209ENST00000436461 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
CALD1-209ENST00000436461 DCAF1Q9Y4B6 1507 aa32.83■■■□□ 2.85
CALD1-209ENST00000436461 NACADO15069 1562 aa32.81■■■□□ 2.84
CALD1-209ENST00000436461 RB1CC1Q8TDY2 1594 aa32.74■■■□□ 2.83
CALD1-209ENST00000436461 MYO15BQ96JP2 1530 aa32.73■■■□□ 2.83
CALD1-209ENST00000436461 SCRIBQ14160 1630 aa32.19■■■□□ 2.74
CALD1-209ENST00000436461 UNC13AQ9UPW8 1703 aa32.16■■■□□ 2.74
CALD1-209ENST00000436461 SHROOM4Q9ULL8 1493 aa31.94■■■□□ 2.7
CALD1-209ENST00000436461 BICRAQ9NZM4 1560 aa31.81■■■□□ 2.68
CALD1-209ENST00000436461 PABPN1Q86U42 306 aaKnown RBP eCLIP31.8■■■□□ 2.68
CALD1-209ENST00000436461 CECR2Q9BXF3 1484 aa31■■■□□ 2.55
CALD1-209ENST00000436461 EIF4G1Q04637 1599 aaKnown RBP30.91■■■□□ 2.54
CALD1-209ENST00000436461 SMARCA4P51532 1647 aa30.77■■■□□ 2.52
CALD1-209ENST00000436461 BAZ1AQ9NRL2 1556 aaPredicted RBP30.76■■■□□ 2.51
CALD1-209ENST00000436461 MROH2BQ7Z745 1585 aa30.72■■■□□ 2.51
CALD1-209ENST00000436461 CC2D2AQ9P2K1 1620 aa30.66■■■□□ 2.5
CALD1-209ENST00000436461 DNAJC5BQ9UF47 199 aa30.62■■■□□ 2.49
CALD1-209ENST00000436461 RSF1Q96T23 1441 aaPredicted RBP30.54■■■□□ 2.48
CALD1-209ENST00000436461 WIZO95785 1651 aa30.47■■■□□ 2.47
CALD1-209ENST00000436461 ATAD2BQ9ULI0 1458 aa30.43■■■□□ 2.46
CALD1-209ENST00000436461 PEG3Q9GZU2 1588 aa30.39■■■□□ 2.45
CALD1-209ENST00000436461 SMARCA2P51531 1590 aa30.38■■■□□ 2.45
CALD1-209ENST00000436461 SUPT5HO00267 1087 aaKnown RBP30.29■■■□□ 2.44
CALD1-209ENST00000436461 NCAPD3P42695 1498 aa30.27■■■□□ 2.44
CALD1-209ENST00000436461 BAZ1BQ9UIG0 1483 aaKnown RBP30.22■■■□□ 2.43
CALD1-209ENST00000436461 HMGXB3Q12766 1538 aa30.19■■■□□ 2.42
CALD1-209ENST00000436461 TOP2AP11388 1531 aaKnown RBP30.08■■■□□ 2.41
CALD1-209ENST00000436461 CCDC88BA6NC98 1476 aa29.75■■■□□ 2.35
CALD1-209ENST00000436461 NESP48681 1621 aa29.53■■■□□ 2.32
CALD1-209ENST00000436461 CADPSQ9ULU8 1353 aa29.45■■■□□ 2.31
CALD1-209ENST00000436461 LAMC3Q9Y6N6 1575 aa29.41■■■□□ 2.3
CALD1-209ENST00000436461 CFTRP13569 1480 aa29.39■■■□□ 2.3
CALD1-209ENST00000436461 PRDM2Q13029 1718 aa29.28■■■□□ 2.28
CALD1-209ENST00000436461 KIF21AQ7Z4S6 1674 aa29.2■■■□□ 2.26
CALD1-209ENST00000436461 PDS5BQ9NTI5 1447 aa29.17■■■□□ 2.26
CALD1-209ENST00000436461 FANCD2Q9BXW9 1451 aa29.15■■■□□ 2.26
CALD1-209ENST00000436461 ERCC6Q03468 1493 aa29.12■■■□□ 2.25
CALD1-209ENST00000436461 CEP164Q9UPV0 1460 aa29.05■■■□□ 2.24
CALD1-209ENST00000436461 ABCC8Q09428 1581 aa28.93■■■□□ 2.22
CALD1-209ENST00000436461 THOC2Q8NI27 1593 aaKnown RBP28.9■■■□□ 2.22
CALD1-209ENST00000436461 MRC2Q9UBG0 1479 aa28.88■■■□□ 2.21
CALD1-209ENST00000436461 URB2Q14146 1524 aaKnown RBP28.86■■■□□ 2.21
CALD1-209ENST00000436461 CUX1P39880 1505 aa28.78■■■□□ 2.2
CALD1-209ENST00000436461 WDR62O43379 1518 aa28.77■■■□□ 2.2
CALD1-209ENST00000436461 WRNQ14191 1432 aaPredicted RBP eCLIP28.77■■■□□ 2.2
CALD1-209ENST00000436461 TOPBP1Q92547 1522 aa28.76■■■□□ 2.19
CALD1-209ENST00000436461 DNMBPQ6XZF7 1577 aa28.75■■■□□ 2.19
CALD1-209ENST00000436461 SYNJ1O43426 1573 aa28.73■■■□□ 2.19
CALD1-209ENST00000436461 TOP2BQ02880 1626 aa28.64■■■□□ 2.18
CALD1-209ENST00000436461 BIVM-ERCC5R4GMW8 1640 aa28.64■■■□□ 2.18
CALD1-209ENST00000436461 FGD5Q6ZNL6 1462 aa28.59■■■□□ 2.17
CALD1-209ENST00000436461 POLA1P09884 1462 aaPredicted RBP28.56■■■□□ 2.16
CALD1-209ENST00000436461 CHIC1Q5VXU3 224 aa28.54■■■□□ 2.16
CALD1-209ENST00000436461 CUX2O14529 1486 aa28.52■■■□□ 2.16
CALD1-209ENST00000436461 TRIM41Q8WV44 630 aa28.51■■■□□ 2.15
CALD1-209ENST00000436461 RAD54L2Q9Y4B4 1467 aa28.48■■■□□ 2.15
CALD1-209ENST00000436461 SOGA1O94964 1423 aa28.43■■■□□ 2.14
CALD1-209ENST00000436461 TARBP1Q13395 1621 aaKnown RBP28.4■■■□□ 2.14
CALD1-209ENST00000436461 IFT140Q96RY7 1462 aa28.38■■■□□ 2.13
CALD1-209ENST00000436461 WDR97A6NE52 1622 aa28.33■■■□□ 2.13
CALD1-209ENST00000436461 ZNF608Q9ULD9 1512 aaPredicted RBP28.31■■■□□ 2.12
CALD1-209ENST00000436461 ABCA10Q8WWZ4 1543 aa28.28■■■□□ 2.12
CALD1-209ENST00000436461 TDRD9Q8NDG6 1382 aaKnown RBP28.25■■■□□ 2.11
CALD1-209ENST00000436461 AQRO60306 1485 aaKnown RBP eCLIP28.21■■■□□ 2.115e-16■■□□□ 11.9
CALD1-209ENST00000436461 EIF4G3O43432 1585 aaKnown RBP28.21■■■□□ 2.11
CALD1-209ENST00000436461 ABCA5Q8WWZ7 1642 aa28.16■■■□□ 2.1
CALD1-209ENST00000436461 RUSC2Q8N2Y8 1516 aa28.16■■■□□ 2.1
CALD1-209ENST00000436461 GAPVD1Q14C86 1478 aa28.11■■■□□ 2.09
CALD1-209ENST00000436461 KIF27Q86VH2 1401 aa28.09■■■□□ 2.09
CALD1-209ENST00000436461 PBRM1Q86U86 1689 aa28.08■■■□□ 2.09
CALD1-209ENST00000436461 FAM9AQ8IZU1 332 aaPredicted RBP28.02■■■□□ 2.08
CALD1-209ENST00000436461 GRIN2BQ13224 1484 aa28■■■□□ 2.07
CALD1-209ENST00000436461 SNAPC4Q5SXM2 1469 aa27.96■■■□□ 2.07
CALD1-209ENST00000436461 ERICH3Q5RHP9 1530 aa27.94■■■□□ 2.06
CALD1-209ENST00000436461 IGF1RP08069 1367 aa27.92■■■□□ 2.06
CALD1-209ENST00000436461 EEA1Q15075 1411 aa27.86■■■□□ 2.05
CALD1-209ENST00000436461 MAGI1Q96QZ7 1491 aaPredicted RBP27.85■■■□□ 2.05
CALD1-209ENST00000436461 ADAMTS12P58397 1594 aa27.85■■■□□ 2.05
CALD1-209ENST00000436461 CSRNP3Q8WYN3 585 aa27.83■■■□□ 2.05
CALD1-209ENST00000436461 CUL7Q14999 1698 aa27.81■■■□□ 2.04
CALD1-209ENST00000436461 CHD1O14646 1710 aa27.78■■■□□ 2.04
CALD1-209ENST00000436461 FBLN2P98095 1184 aa27.78■■■□□ 2.04
CALD1-209ENST00000436461 CARMIL1Q5VZK9 1371 aa27.78■■■□□ 2.04
CALD1-209ENST00000436461 FHAD1B1AJZ9 1412 aa27.77■■■□□ 2.04
CALD1-209ENST00000436461 SYNJ2O15056 1496 aa27.75■■■□□ 2.03
CALD1-209ENST00000436461 CHMP7Q8WUX9 453 aaPredicted RBP27.73■■■□□ 2.03
CALD1-209ENST00000436461 PRXQ9BXM0 1461 aa27.71■■■□□ 2.03
CALD1-209ENST00000436461 EHMT2Q96KQ7 1210 aa27.7■■■□□ 2.03
CALD1-209ENST00000436461 GRIN2AQ12879 1464 aa27.68■■■□□ 2.02
CALD1-209ENST00000436461 RAPGEF2Q9Y4G8 1499 aa27.66■■■□□ 2.02
CALD1-209ENST00000436461 KIF21BO75037 1637 aa27.62■■■□□ 2.01
CALD1-209ENST00000436461 CEP170Q5SW79 1584 aa27.57■■■□□ 2
CALD1-209ENST00000436461 GOLGA3Q08378 1498 aa27.5■■□□□ 1.99
CALD1-209ENST00000436461 NUP160Q12769 1436 aa27.5■■□□□ 1.99
CALD1-209ENST00000436461 OSCARQ8IYS5 282 aa27.48■■□□□ 1.99
CALD1-209ENST00000436461 LOC105371045A0A1W2PR82 267 aa27.46■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms