RNA–Protein interactions for RNA: ENST00000436427.1

YBX1-203, Transcript of Y-box binding protein 1, humanhuman

TSL 1 (best)

Gene YBX1, Length 1,524 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1-203ENST00000436427 NISCHQ9Y2I1 1504 aa49.78■■■■■ 5.56
YBX1-203ENST00000436427 CCDC180Q9P1Z9 1646 aa43.76■■■■■ 4.6
YBX1-203ENST00000436427 ABCC9O60706 1549 aa41.96■■■■■ 4.31
YBX1-203ENST00000436427 ZCCHC6Q5VYS8 1495 aaKnown RBP41.69■■■■■ 4.26
YBX1-203ENST00000436427 DCAF8L2P0C7V8 631 aa41.35■■■■■ 4.21
YBX1-203ENST00000436427 DCAF1Q9Y4B6 1507 aa41.16■■■■■ 4.18
YBX1-203ENST00000436427 MYO15BQ96JP2 1530 aa40.93■■■■■ 4.14
YBX1-203ENST00000436427 NACADO15069 1562 aa40.91■■■■■ 4.14
YBX1-203ENST00000436427 RB1CC1Q8TDY2 1594 aa40.73■■■■■ 4.11
YBX1-203ENST00000436427 SCRIBQ14160 1630 aa40.15■■■■■ 4.02
YBX1-203ENST00000436427 SHROOM4Q9ULL8 1493 aa40.15■■■■■ 4.02
YBX1-203ENST00000436427 UNC13AQ9UPW8 1703 aa39.85■■■■□ 3.97
YBX1-203ENST00000436427 BICRAQ9NZM4 1560 aa39.46■■■■□ 3.91
YBX1-203ENST00000436427 PABPN1Q86U42 306 aaKnown RBP eCLIP39.41■■■■□ 3.9
YBX1-203ENST00000436427 CECR2Q9BXF3 1484 aa38.72■■■■□ 3.79
YBX1-203ENST00000436427 BAZ1AQ9NRL2 1556 aaPredicted RBP38.52■■■■□ 3.76
YBX1-203ENST00000436427 SMARCA4P51532 1647 aa38.43■■■■□ 3.74
YBX1-203ENST00000436427 MROH2BQ7Z745 1585 aa38.42■■■■□ 3.74
YBX1-203ENST00000436427 EIF4G1Q04637 1599 aaKnown RBP38.36■■■■□ 3.73
YBX1-203ENST00000436427 RSF1Q96T23 1441 aaPredicted RBP38.35■■■■□ 3.73
YBX1-203ENST00000436427 SUPT5HO00267 1087 aaKnown RBP38.29■■■■□ 3.72
YBX1-203ENST00000436427 WIZO95785 1651 aa38.09■■■■□ 3.69
YBX1-203ENST00000436427 PEG3Q9GZU2 1588 aa37.97■■■■□ 3.67
YBX1-203ENST00000436427 CC2D2AQ9P2K1 1620 aa37.96■■■■□ 3.67
YBX1-203ENST00000436427 SMARCA2P51531 1590 aa37.94■■■■□ 3.66
YBX1-203ENST00000436427 ATAD2BQ9ULI0 1458 aa37.94■■■■□ 3.66
YBX1-203ENST00000436427 NCAPD3P42695 1498 aa37.73■■■■□ 3.63
YBX1-203ENST00000436427 BAZ1BQ9UIG0 1483 aaKnown RBP37.73■■■■□ 3.63
YBX1-203ENST00000436427 TOP2AP11388 1531 aaKnown RBP37.7■■■■□ 3.63
YBX1-203ENST00000436427 HMGXB3Q12766 1538 aa37.65■■■■□ 3.62
YBX1-203ENST00000436427 DNAJC5BQ9UF47 199 aa37.54■■■■□ 3.6
YBX1-203ENST00000436427 CCDC88BA6NC98 1476 aa37.28■■■■□ 3.56
YBX1-203ENST00000436427 CADPSQ9ULU8 1353 aa36.72■■■■□ 3.47
YBX1-203ENST00000436427 CFTRP13569 1480 aa36.71■■■■□ 3.47
YBX1-203ENST00000436427 NESP48681 1621 aa36.61■■■■□ 3.45
YBX1-203ENST00000436427 LAMC3Q9Y6N6 1575 aa36.59■■■■□ 3.45
YBX1-203ENST00000436427 PRDM2Q13029 1718 aa36.52■■■■□ 3.44
YBX1-203ENST00000436427 FANCD2Q9BXW9 1451 aa36.33■■■■□ 3.41
YBX1-203ENST00000436427 PDS5BQ9NTI5 1447 aa36.33■■■■□ 3.41
YBX1-203ENST00000436427 ABCC8Q09428 1581 aa36.28■■■■□ 3.4
YBX1-203ENST00000436427 CHIC1Q5VXU3 224 aa36.26■■■■□ 3.4
YBX1-203ENST00000436427 CEP164Q9UPV0 1460 aa36.19■■■■□ 3.38
YBX1-203ENST00000436427 KIF21AQ7Z4S6 1674 aa36.19■■■■□ 3.38
YBX1-203ENST00000436427 WRNQ14191 1432 aaPredicted RBP eCLIP36.14■■■■□ 3.38
YBX1-203ENST00000436427 ERCC6Q03468 1493 aa36.08■■■■□ 3.37
YBX1-203ENST00000436427 TRIM41Q8WV44 630 aa36.07■■■■□ 3.36
YBX1-203ENST00000436427 SYNJ1O43426 1573 aa36.01■■■■□ 3.36
YBX1-203ENST00000436427 CUX1P39880 1505 aa35.98■■■■□ 3.35
YBX1-203ENST00000436427 TOP2BQ02880 1626 aa35.93■■■■□ 3.34
YBX1-203ENST00000436427 BIVM-ERCC5R4GMW8 1640 aa35.91■■■■□ 3.34
YBX1-203ENST00000436427 MRC2Q9UBG0 1479 aa35.9■■■■□ 3.34
YBX1-203ENST00000436427 URB2Q14146 1524 aaKnown RBP35.9■■■■□ 3.34
YBX1-203ENST00000436427 DNMBPQ6XZF7 1577 aa35.89■■■■□ 3.34
YBX1-203ENST00000436427 TOPBP1Q92547 1522 aa35.86■■■■□ 3.33
YBX1-203ENST00000436427 THOC2Q8NI27 1593 aaKnown RBP35.78■■■■□ 3.32
YBX1-203ENST00000436427 WDR62O43379 1518 aa35.73■■■■□ 3.31
YBX1-203ENST00000436427 FGD5Q6ZNL6 1462 aa35.71■■■■□ 3.31
YBX1-203ENST00000436427 POLA1P09884 1462 aaPredicted RBP35.63■■■■□ 3.29
YBX1-203ENST00000436427 SOGA1O94964 1423 aa35.51■■■■□ 3.28
YBX1-203ENST00000436427 RAD54L2Q9Y4B4 1467 aa35.5■■■■□ 3.27
YBX1-203ENST00000436427 CUX2O14529 1486 aa35.43■■■■□ 3.26
YBX1-203ENST00000436427 FAM9AQ8IZU1 332 aaPredicted RBP35.37■■■■□ 3.25
YBX1-203ENST00000436427 TARBP1Q13395 1621 aaKnown RBP35.37■■■■□ 3.25
YBX1-203ENST00000436427 ABCA10Q8WWZ4 1543 aa35.37■■■■□ 3.25
YBX1-203ENST00000436427 IFT140Q96RY7 1462 aa35.35■■■■□ 3.25
YBX1-203ENST00000436427 RUSC2Q8N2Y8 1516 aa35.34■■■■□ 3.25
YBX1-203ENST00000436427 WDR97A6NE52 1622 aa35.33■■■■□ 3.25
YBX1-203ENST00000436427 KIF27Q86VH2 1401 aa35.3■■■■□ 3.24
YBX1-203ENST00000436427 EEA1Q15075 1411 aa35.27■■■■□ 3.24
YBX1-203ENST00000436427 TDRD9Q8NDG6 1382 aaKnown RBP35.21■■■■□ 3.23
YBX1-203ENST00000436427 ZNF608Q9ULD9 1512 aaPredicted RBP35.16■■■■□ 3.22
YBX1-203ENST00000436427 ABCA5Q8WWZ7 1642 aa35.15■■■■□ 3.22
YBX1-203ENST00000436427 CSRNP3Q8WYN3 585 aa35.12■■■■□ 3.21
YBX1-203ENST00000436427 GAPVD1Q14C86 1478 aa35.12■■■■□ 3.21
YBX1-203ENST00000436427 AQRO60306 1485 aaKnown RBP eCLIP35.11■■■■□ 3.212e-10■■■■■ 31.9
YBX1-203ENST00000436427 EIF4G3O43432 1585 aaKnown RBP35.07■■■■□ 3.2
YBX1-203ENST00000436427 IGF1RP08069 1367 aa35.01■■■■□ 3.2
YBX1-203ENST00000436427 PBRM1Q86U86 1689 aa34.98■■■■□ 3.19
YBX1-203ENST00000436427 ERICH3Q5RHP9 1530 aa34.96■■■■□ 3.19
YBX1-203ENST00000436427 GRIN2BQ13224 1484 aa34.95■■■■□ 3.19
YBX1-203ENST00000436427 EHMT2Q96KQ7 1210 aa34.91■■■■□ 3.18
YBX1-203ENST00000436427 CUL7Q14999 1698 aa34.86■■■■□ 3.17
YBX1-203ENST00000436427 PRXQ9BXM0 1461 aa34.86■■■■□ 3.17
YBX1-203ENST00000436427 KIF21BO75037 1637 aa34.85■■■■□ 3.17
YBX1-203ENST00000436427 CARMIL1Q5VZK9 1371 aa34.85■■■■□ 3.17
YBX1-203ENST00000436427 LOC105371045A0A1W2PR82 267 aa34.85■■■■□ 3.17
YBX1-203ENST00000436427 SNAPC4Q5SXM2 1469 aa34.8■■■■□ 3.16
YBX1-203ENST00000436427 GOLGA3Q08378 1498 aa34.77■■■■□ 3.16
YBX1-203ENST00000436427 RAPGEF2Q9Y4G8 1499 aa34.77■■■■□ 3.16
YBX1-203ENST00000436427 ADAMTS12P58397 1594 aa34.75■■■■□ 3.15
YBX1-203ENST00000436427 MAGI1Q96QZ7 1491 aaPredicted RBP34.73■■■■□ 3.15
YBX1-203ENST00000436427 FHAD1B1AJZ9 1412 aa34.72■■■■□ 3.15
YBX1-203ENST00000436427 UBTFP17480 764 aaKnown RBP34.65■■■■□ 3.14
YBX1-203ENST00000436427 SYNJ2O15056 1496 aa34.6■■■■□ 3.13
YBX1-203ENST00000436427 CHMP7Q8WUX9 453 aaPredicted RBP34.56■■■■□ 3.12
YBX1-203ENST00000436427 FBLN2P98095 1184 aa34.55■■■■□ 3.12
YBX1-203ENST00000436427 GRIN2AQ12879 1464 aa34.52■■■■□ 3.12
YBX1-203ENST00000436427 TNIKQ9UKE5 1360 aa34.5■■■■□ 3.11
YBX1-203ENST00000436427 CHD1O14646 1710 aa34.43■■■■□ 3.1
YBX1-203ENST00000436427 CTTNBP2Q8WZ74 1663 aa34.38■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms