RNA–Protein interactions for RNA: ENST00000434046.6

SYNPO2-203, Transcript of synaptopodin 2, humanhuman

TSL 1 (best) BASIC

Gene SYNPO2, Length 3,588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-203ENST00000434046 NISCHQ9Y2I1 1504 aa14.15□□□□□ -0.14
SYNPO2-203ENST00000434046 DCAF8L2P0C7V8 631 aa12.78□□□□□ -0.36
SYNPO2-203ENST00000434046 SHROOM4Q9ULL8 1493 aa12.51□□□□□ -0.41
SYNPO2-203ENST00000434046 SUPT5HO00267 1087 aaKnown RBP12.36□□□□□ -0.43
SYNPO2-203ENST00000434046 HRCP23327 699 aa12.28□□□□□ -0.44
SYNPO2-203ENST00000434046 CCDC180Q9P1Z9 1646 aa12.24□□□□□ -0.45
SYNPO2-203ENST00000434046 PCGF6Q9BYE7 350 aa12.24□□□□□ -0.45
SYNPO2-203ENST00000434046 PPARGC1BQ86YN6 1023 aaKnown RBP12.17□□□□□ -0.46
SYNPO2-203ENST00000434046 PELP1Q8IZL8 1130 aaKnown RBP12.03□□□□□ -0.48
SYNPO2-203ENST00000434046 ABCC9O60706 1549 aa12□□□□□ -0.49
SYNPO2-203ENST00000434046 ZCCHC6Q5VYS8 1495 aaKnown RBP11.84□□□□□ -0.51
SYNPO2-203ENST00000434046 CHIC1Q5VXU3 224 aa11.8□□□□□ -0.52
SYNPO2-203ENST00000434046 LOC105371045A0A1W2PR82 267 aa11.7□□□□□ -0.54
SYNPO2-203ENST00000434046 MYO15BQ96JP2 1530 aa11.69□□□□□ -0.54
SYNPO2-203ENST00000434046 TRIM26Q12899 539 aaPredicted RBP11.66□□□□□ -0.54
SYNPO2-203ENST00000434046 SCAF1Q9H7N4 1312 aaKnown RBP11.66□□□□□ -0.54
SYNPO2-203ENST00000434046 ZEB1P37275 1124 aaPredicted RBP11.62□□□□□ -0.55
SYNPO2-203ENST00000434046 EHMT2Q96KQ7 1210 aa11.6□□□□□ -0.55
SYNPO2-203ENST00000434046 MYT1Q01538 1121 aa11.59□□□□□ -0.55
SYNPO2-203ENST00000434046 RB1CC1Q8TDY2 1594 aa11.56□□□□□ -0.56
SYNPO2-203ENST00000434046 NACADO15069 1562 aa11.55□□□□□ -0.56
SYNPO2-203ENST00000434046 FAM9AQ8IZU1 332 aaPredicted RBP11.52□□□□□ -0.57
SYNPO2-203ENST00000434046 TRIM41Q8WV44 630 aa11.5□□□□□ -0.57
SYNPO2-203ENST00000434046 CENPBP07199 599 aaPredicted RBP11.47□□□□□ -0.57
SYNPO2-203ENST00000434046 DCAF1Q9Y4B6 1507 aa11.46□□□□□ -0.58
SYNPO2-203ENST00000434046 SCRIBQ14160 1630 aa11.44□□□□□ -0.58
SYNPO2-203ENST00000434046 GTF3C3Q9Y5Q9 886 aa11.43□□□□□ -0.58
SYNPO2-203ENST00000434046 ACIN1Q9UKV3 1341 aaKnown RBP11.41□□□□□ -0.58
SYNPO2-203ENST00000434046 NEUROD1Q13562 356 aa11.38□□□□□ -0.59
SYNPO2-203ENST00000434046 CCER1Q8TC90 406 aaPredicted RBP11.38□□□□□ -0.59
SYNPO2-203ENST00000434046 YTHDC1Q96MU7 727 aaKnown RBP11.36□□□□□ -0.59
SYNPO2-203ENST00000434046 PABPN1Q86U42 306 aaKnown RBP eCLIP11.33□□□□□ -0.6
SYNPO2-203ENST00000434046 TTBK1Q5TCY1 1321 aaPredicted RBP11.31□□□□□ -0.6
SYNPO2-203ENST00000434046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.31□□□□□ -0.6
SYNPO2-203ENST00000434046 DIEXFQ68CQ4 756 aaKnown RBP11.29□□□□□ -0.6
SYNPO2-203ENST00000434046 RSF1Q96T23 1441 aaPredicted RBP11.2□□□□□ -0.62
SYNPO2-203ENST00000434046 UNC13AQ9UPW8 1703 aa11.15□□□□□ -0.63
SYNPO2-203ENST00000434046 UBTFP17480 764 aaKnown RBP11.13□□□□□ -0.63
SYNPO2-203ENST00000434046 BICRAQ9NZM4 1560 aa11.12□□□□□ -0.63
SYNPO2-203ENST00000434046 CECR2Q9BXF3 1484 aa11.1□□□□□ -0.63
SYNPO2-203ENST00000434046 RANGAP1P46060 587 aaPredicted RBP11.07□□□□□ -0.64
SYNPO2-203ENST00000434046 APLP2Q06481 763 aa11.06□□□□□ -0.64
SYNPO2-203ENST00000434046 MROH2BQ7Z745 1585 aa10.99□□□□□ -0.65
SYNPO2-203ENST00000434046 ZNF316A6NFI3 1004 aaPredicted RBP10.99□□□□□ -0.65
SYNPO2-203ENST00000434046 BAZ1AQ9NRL2 1556 aaPredicted RBP10.97□□□□□ -0.65
SYNPO2-203ENST00000434046 SLC24A1O60721 1099 aa10.95□□□□□ -0.66
SYNPO2-203ENST00000434046 DNAJC5BQ9UF47 199 aa10.93□□□□□ -0.66
SYNPO2-203ENST00000434046 MIER1Q8N108 512 aa10.93□□□□□ -0.66
SYNPO2-203ENST00000434046 HNRNPUL2Q1KMD3 747 aaKnown RBP10.88□□□□□ -0.67
SYNPO2-203ENST00000434046 EIF4G1Q04637 1599 aaKnown RBP10.88□□□□□ -0.67
SYNPO2-203ENST00000434046 CSRNP3Q8WYN3 585 aa10.87□□□□□ -0.67
SYNPO2-203ENST00000434046 WIZO95785 1651 aa10.87□□□□□ -0.67
SYNPO2-203ENST00000434046 BCL11AQ9H165 835 aa10.85□□□□□ -0.67
SYNPO2-203ENST00000434046 BCANQ96GW7 911 aa10.83□□□□□ -0.67
SYNPO2-203ENST00000434046 CC2D2AQ9P2K1 1620 aa10.81□□□□□ -0.68
SYNPO2-203ENST00000434046 ANP32EQ9BTT0 268 aa10.81□□□□□ -0.68
SYNPO2-203ENST00000434046 ATP1B4Q9UN42 357 aaPredicted RBP10.8□□□□□ -0.68
SYNPO2-203ENST00000434046 BAZ1BQ9UIG0 1483 aaKnown RBP10.79□□□□□ -0.68
SYNPO2-203ENST00000434046 CCDC88BA6NC98 1476 aa10.78□□□□□ -0.68
SYNPO2-203ENST00000434046 SMARCA4P51532 1647 aa10.75□□□□□ -0.69
SYNPO2-203ENST00000434046 SUPT16HQ9Y5B9 1047 aaKnown RBP10.75□□□□□ -0.69
SYNPO2-203ENST00000434046 TOP2AP11388 1531 aaKnown RBP10.74□□□□□ -0.69
SYNPO2-203ENST00000434046 ERICH6Q7L0X2 663 aa10.74□□□□□ -0.69
SYNPO2-203ENST00000434046 WRNQ14191 1432 aaPredicted RBP eCLIP10.73□□□□□ -0.69
SYNPO2-203ENST00000434046 NEFLP07196 543 aa10.7□□□□□ -0.7
SYNPO2-203ENST00000434046 ABCC8Q09428 1581 aa10.7□□□□□ -0.7
SYNPO2-203ENST00000434046 TSHZ2Q9NRE2 1034 aa10.69□□□□□ -0.7
SYNPO2-203ENST00000434046 SMARCA2P51531 1590 aa10.68□□□□□ -0.7
SYNPO2-203ENST00000434046 ATAD2BQ9ULI0 1458 aa10.68□□□□□ -0.7
SYNPO2-203ENST00000434046 EEA1Q15075 1411 aa10.67□□□□□ -0.7
SYNPO2-203ENST00000434046 NCAPD3P42695 1498 aa10.67□□□□□ -0.7
SYNPO2-203ENST00000434046 SOGA1O94964 1423 aa10.65□□□□□ -0.7
SYNPO2-203ENST00000434046 CLSPNQ9HAW4 1339 aa10.65□□□□□ -0.7
SYNPO2-203ENST00000434046 FKBP8Q14318 412 aa10.64□□□□□ -0.71
SYNPO2-203ENST00000434046 ITGAEP38570 1179 aa10.63□□□□□ -0.71
SYNPO2-203ENST00000434046 CEP162Q5TB80 1403 aa10.62□□□□□ -0.71
SYNPO2-203ENST00000434046 GOLGA3Q08378 1498 aa10.6□□□□□ -0.71
SYNPO2-203ENST00000434046 HMGXB3Q12766 1538 aa10.59□□□□□ -0.71
SYNPO2-203ENST00000434046 PEG3Q9GZU2 1588 aa10.59□□□□□ -0.71
SYNPO2-203ENST00000434046 TNIKQ9UKE5 1360 aa10.59□□□□□ -0.71
SYNPO2-203ENST00000434046 CLIP1P30622 1438 aa10.57□□□□□ -0.72
SYNPO2-203ENST00000434046 CEP164Q9UPV0 1460 aa10.55□□□□□ -0.72
SYNPO2-203ENST00000434046 P3H3Q8IVL6 736 aa10.54□□□□□ -0.72
SYNPO2-203ENST00000434046 RBM19Q9Y4C8 960 aaKnown RBP10.51□□□□□ -0.73
SYNPO2-203ENST00000434046 KIF27Q86VH2 1401 aa10.5□□□□□ -0.73
SYNPO2-203ENST00000434046 RUSC2Q8N2Y8 1516 aa10.5□□□□□ -0.73
SYNPO2-203ENST00000434046 TRIM52Q96A61 297 aa10.47□□□□□ -0.73
SYNPO2-203ENST00000434046 FAM50AQ14320 339 aaKnown RBP10.47□□□□□ -0.73
SYNPO2-203ENST00000434046 KCNH8Q96L42 1107 aa10.47□□□□□ -0.73
SYNPO2-203ENST00000434046 DDX10Q13206 875 aaKnown RBP10.45□□□□□ -0.74
SYNPO2-203ENST00000434046 CDK11AQ9UQ88 783 aaPredicted RBP10.44□□□□□ -0.74
SYNPO2-203ENST00000434046 CADPSQ9ULU8 1353 aa10.42□□□□□ -0.74
SYNPO2-203ENST00000434046 IRX6P78412 446 aaPredicted RBP10.41□□□□□ -0.74
SYNPO2-203ENST00000434046 CUX2O14529 1486 aa10.41□□□□□ -0.74
SYNPO2-203ENST00000434046 ERCC6Q03468 1493 aa10.39□□□□□ -0.75
SYNPO2-203ENST00000434046 RAPGEF2Q9Y4G8 1499 aa10.38□□□□□ -0.75
SYNPO2-203ENST00000434046 FBLN2P98095 1184 aa10.38□□□□□ -0.75
SYNPO2-203ENST00000434046 HIRIP3Q9BW71 556 aaPredicted RBP10.38□□□□□ -0.75
SYNPO2-203ENST00000434046 NBR1Q14596 966 aa10.37□□□□□ -0.75
SYNPO2-203ENST00000434046 ANP32CO43423 234 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms