RNA–Protein interactions for RNA: ENST00000430705.5

PTPRA-206, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5

Gene PTPRA, Length 733 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-206ENST00000430705 NISCHQ9Y2I1 1504 aa40.94■■■■■ 4.14
PTPRA-206ENST00000430705 CCDC180Q9P1Z9 1646 aa36.7■■■■□ 3.47
PTPRA-206ENST00000430705 ABCC9O60706 1549 aa36.44■■■■□ 3.42
PTPRA-206ENST00000430705 RB1CC1Q8TDY2 1594 aa34.77■■■■□ 3.16
PTPRA-206ENST00000430705 NACADO15069 1562 aa34.57■■■■□ 3.13
PTPRA-206ENST00000430705 DCAF8L2P0C7V8 631 aa34.22■■■■□ 3.07
PTPRA-206ENST00000430705 MYO15BQ96JP2 1530 aa34.2■■■■□ 3.06
PTPRA-206ENST00000430705 UNC13AQ9UPW8 1703 aa34.13■■■■□ 3.05
PTPRA-206ENST00000430705 DNAJC5BQ9UF47 199 aa34.03■■■■□ 3.04
PTPRA-206ENST00000430705 ZCCHC6Q5VYS8 1495 aaKnown RBP34.02■■■■□ 3.04
PTPRA-206ENST00000430705 PABPN1Q86U42 306 aaKnown RBP eCLIP33.89■■■■□ 3.02
PTPRA-206ENST00000430705 BICRAQ9NZM4 1560 aa33.88■■■■□ 3.01
PTPRA-206ENST00000430705 DCAF1Q9Y4B6 1507 aa33.84■■■■□ 3.01
PTPRA-206ENST00000430705 SCRIBQ14160 1630 aa33.45■■■□□ 2.95
PTPRA-206ENST00000430705 SHROOM4Q9ULL8 1493 aa33.33■■■□□ 2.93
PTPRA-206ENST00000430705 CC2D2AQ9P2K1 1620 aa32.98■■■□□ 2.87
PTPRA-206ENST00000430705 EIF4G1Q04637 1599 aaKnown RBP32.96■■■□□ 2.87
PTPRA-206ENST00000430705 CECR2Q9BXF3 1484 aa32.79■■■□□ 2.84
PTPRA-206ENST00000430705 SMARCA4P51532 1647 aa31.94■■■□□ 2.7
PTPRA-206ENST00000430705 NCAPD3P42695 1498 aa31.91■■■□□ 2.7
PTPRA-206ENST00000430705 ATAD2BQ9ULI0 1458 aa31.87■■■□□ 2.69
PTPRA-206ENST00000430705 SMARCA2P51531 1590 aa31.77■■■□□ 2.68
PTPRA-206ENST00000430705 HMGXB3Q12766 1538 aa31.75■■■□□ 2.67
PTPRA-206ENST00000430705 BAZ1AQ9NRL2 1556 aaPredicted RBP31.74■■■□□ 2.67
PTPRA-206ENST00000430705 PEG3Q9GZU2 1588 aa31.64■■■□□ 2.65
PTPRA-206ENST00000430705 MROH2BQ7Z745 1585 aa31.59■■■□□ 2.65
PTPRA-206ENST00000430705 BAZ1BQ9UIG0 1483 aaKnown RBP31.53■■■□□ 2.64
PTPRA-206ENST00000430705 NESP48681 1621 aa31.42■■■□□ 2.62
PTPRA-206ENST00000430705 ERCC6Q03468 1493 aa31.38■■■□□ 2.61
PTPRA-206ENST00000430705 CUX2O14529 1486 aa31.31■■■□□ 2.6
PTPRA-206ENST00000430705 WIZO95785 1651 aa31.22■■■□□ 2.59
PTPRA-206ENST00000430705 LAMC3Q9Y6N6 1575 aa31.18■■■□□ 2.58
PTPRA-206ENST00000430705 THOC2Q8NI27 1593 aaKnown RBP31.13■■■□□ 2.57
PTPRA-206ENST00000430705 KIF21AQ7Z4S6 1674 aa31.06■■■□□ 2.56
PTPRA-206ENST00000430705 DNAJC5Q9H3Z4 198 aa30.99■■■□□ 2.55
PTPRA-206ENST00000430705 RSF1Q96T23 1441 aaPredicted RBP30.96■■■□□ 2.55
PTPRA-206ENST00000430705 CADPSQ9ULU8 1353 aa30.92■■■□□ 2.54
PTPRA-206ENST00000430705 PDS5BQ9NTI5 1447 aa30.9■■■□□ 2.54
PTPRA-206ENST00000430705 TOP2AP11388 1531 aaKnown RBP30.83■■■□□ 2.53
PTPRA-206ENST00000430705 MRC2Q9UBG0 1479 aa30.71■■■□□ 2.51
PTPRA-206ENST00000430705 WDR62O43379 1518 aa30.69■■■□□ 2.5
PTPRA-206ENST00000430705 CFTRP13569 1480 aa30.66■■■□□ 2.5
PTPRA-206ENST00000430705 CEP164Q9UPV0 1460 aa30.61■■■□□ 2.49
PTPRA-206ENST00000430705 FANCD2Q9BXW9 1451 aa30.6■■■□□ 2.49
PTPRA-206ENST00000430705 PRDM2Q13029 1718 aa30.46■■■□□ 2.47
PTPRA-206ENST00000430705 CCDC88BA6NC98 1476 aa30.44■■■□□ 2.46
PTPRA-206ENST00000430705 URB2Q14146 1524 aaKnown RBP30.41■■■□□ 2.46
PTPRA-206ENST00000430705 TOPBP1Q92547 1522 aa30.07■■■□□ 2.4
PTPRA-206ENST00000430705 DNMBPQ6XZF7 1577 aa29.99■■■□□ 2.39
PTPRA-206ENST00000430705 ZNF608Q9ULD9 1512 aaPredicted RBP29.99■■■□□ 2.39
PTPRA-206ENST00000430705 IFT140Q96RY7 1462 aa29.98■■■□□ 2.39
PTPRA-206ENST00000430705 ABCC8Q09428 1581 aa29.91■■■□□ 2.38
PTPRA-206ENST00000430705 EIF4G3O43432 1585 aaKnown RBP29.87■■■□□ 2.37
PTPRA-206ENST00000430705 TARBP1Q13395 1621 aaKnown RBP29.86■■■□□ 2.37
PTPRA-206ENST00000430705 POLA1P09884 1462 aaPredicted RBP29.8■■■□□ 2.36
PTPRA-206ENST00000430705 OSCARQ8IYS5 282 aa29.77■■■□□ 2.36
PTPRA-206ENST00000430705 AQRO60306 1485 aaKnown RBP eCLIP29.68■■■□□ 2.34
PTPRA-206ENST00000430705 CUX1P39880 1505 aa29.67■■■□□ 2.34
PTPRA-206ENST00000430705 TRIM41Q8WV44 630 aa29.67■■■□□ 2.34
PTPRA-206ENST00000430705 RAD54L2Q9Y4B4 1467 aa29.67■■■□□ 2.34
PTPRA-206ENST00000430705 FGD5Q6ZNL6 1462 aa29.62■■■□□ 2.33
PTPRA-206ENST00000430705 CHD1O14646 1710 aa29.6■■■□□ 2.33
PTPRA-206ENST00000430705 RIMBP3CA6NJZ7 1639 aa29.57■■■□□ 2.32
PTPRA-206ENST00000430705 RIMBP3BA6NNM3 1639 aa29.57■■■□□ 2.32
PTPRA-206ENST00000430705 RIMBP3Q9UFD9 1639 aa29.57■■■□□ 2.32
PTPRA-206ENST00000430705 SUPT5HO00267 1087 aaKnown RBP29.57■■■□□ 2.32
PTPRA-206ENST00000430705 SOGA1O94964 1423 aa29.56■■■□□ 2.32
PTPRA-206ENST00000430705 WDR97A6NE52 1622 aa29.53■■■□□ 2.32
PTPRA-206ENST00000430705 TDRD9Q8NDG6 1382 aaKnown RBP29.5■■■□□ 2.31
PTPRA-206ENST00000430705 ARHGEF11O15085 1522 aa29.47■■■□□ 2.31
PTPRA-206ENST00000430705 SNAPC4Q5SXM2 1469 aa29.42■■■□□ 2.3
PTPRA-206ENST00000430705 PBRM1Q86U86 1689 aa29.33■■■□□ 2.29
PTPRA-206ENST00000430705 GRIN2BQ13224 1484 aa29.32■■■□□ 2.28
PTPRA-206ENST00000430705 ABCA5Q8WWZ7 1642 aa29.31■■■□□ 2.28
PTPRA-206ENST00000430705 MAGI1Q96QZ7 1491 aaPredicted RBP29.31■■■□□ 2.28
PTPRA-206ENST00000430705 ABCA10Q8WWZ4 1543 aa29.3■■■□□ 2.28
PTPRA-206ENST00000430705 FBLN2P98095 1184 aa29.29■■■□□ 2.28
PTPRA-206ENST00000430705 CLASP1Q7Z460 1538 aa29.28■■■□□ 2.28
PTPRA-206ENST00000430705 BIVM-ERCC5R4GMW8 1640 aa29.27■■■□□ 2.28
PTPRA-206ENST00000430705 SYNJ1O43426 1573 aa29.25■■■□□ 2.27
PTPRA-206ENST00000430705 GAPVD1Q14C86 1478 aa29.24■■■□□ 2.27
PTPRA-206ENST00000430705 TOP2BQ02880 1626 aa29.23■■■□□ 2.27
PTPRA-206ENST00000430705 ARAP1Q96P48 1450 aa29.23■■■□□ 2.27
PTPRA-206ENST00000430705 SYNJ2O15056 1496 aa29.22■■■□□ 2.27
PTPRA-206ENST00000430705 WRNQ14191 1432 aaPredicted RBP eCLIP29.15■■■□□ 2.26
PTPRA-206ENST00000430705 CHMP7Q8WUX9 453 aaPredicted RBP29.12■■■□□ 2.25
PTPRA-206ENST00000430705 CYB5RLQ6IPT4 315 aa29.08■■■□□ 2.25
PTPRA-206ENST00000430705 ADAMTS12P58397 1594 aa29.06■■■□□ 2.24
PTPRA-206ENST00000430705 GRIN2AQ12879 1464 aa28.98■■■□□ 2.23
PTPRA-206ENST00000430705 CEP170Q5SW79 1584 aa28.94■■■□□ 2.22
PTPRA-206ENST00000430705 ERICH3Q5RHP9 1530 aa28.92■■■□□ 2.22
PTPRA-206ENST00000430705 NUP160Q12769 1436 aa28.89■■■□□ 2.22
PTPRA-206ENST00000430705 FHAD1B1AJZ9 1412 aa28.86■■■□□ 2.21
PTPRA-206ENST00000430705 ERCC6L2Q5T890 1561 aa28.86■■■□□ 2.21
PTPRA-206ENST00000430705 SHROOM2Q13796 1616 aa28.8■■■□□ 2.2
PTPRA-206ENST00000430705 RUSC2Q8N2Y8 1516 aa28.67■■■□□ 2.18
PTPRA-206ENST00000430705 TRHP20396 242 aaPredicted RBP28.64■■■□□ 2.18
PTPRA-206ENST00000430705 CUL7Q14999 1698 aa28.55■■■□□ 2.16
PTPRA-206ENST00000430705 IGF1RP08069 1367 aa28.55■■■□□ 2.16
PTPRA-206ENST00000430705 KIF27Q86VH2 1401 aa28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms