RNA–Protein interactions for RNA: ENST00000430548.5

AC004540.1-202, humanhuman

TSL 4

Gene AC004540.1, Length 576 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-202ENST00000430548 NISCHQ9Y2I1 1504 aa47.25■■■■■ 5.16
AC004540.1-202ENST00000430548 CCDC180Q9P1Z9 1646 aa42.62■■■■■ 4.41
AC004540.1-202ENST00000430548 ABCC9O60706 1549 aa42.32■■■■■ 4.37
AC004540.1-202ENST00000430548 RB1CC1Q8TDY2 1594 aa40.43■■■■■ 4.06
AC004540.1-202ENST00000430548 NACADO15069 1562 aa40.15■■■■■ 4.02
AC004540.1-202ENST00000430548 UNC13AQ9UPW8 1703 aa39.69■■■■□ 3.94
AC004540.1-202ENST00000430548 MYO15BQ96JP2 1530 aa39.67■■■■□ 3.94
AC004540.1-202ENST00000430548 DNAJC5BQ9UF47 199 aa39.62■■■■□ 3.93
AC004540.1-202ENST00000430548 DCAF8L2P0C7V8 631 aa39.45■■■■□ 3.91
AC004540.1-202ENST00000430548 BICRAQ9NZM4 1560 aa39.3■■■■□ 3.88
AC004540.1-202ENST00000430548 PABPN1Q86U42 306 aaKnown RBP eCLIP39.23■■■■□ 3.87
AC004540.1-202ENST00000430548 ZCCHC6Q5VYS8 1495 aaKnown RBP39.23■■■■□ 3.87
AC004540.1-202ENST00000430548 DCAF1Q9Y4B6 1507 aa39.14■■■■□ 3.86
AC004540.1-202ENST00000430548 SHROOM4Q9ULL8 1493 aa38.84■■■■□ 3.81
AC004540.1-202ENST00000430548 SCRIBQ14160 1630 aa38.65■■■■□ 3.78
AC004540.1-202ENST00000430548 CC2D2AQ9P2K1 1620 aa38.37■■■■□ 3.73
AC004540.1-202ENST00000430548 EIF4G1Q04637 1599 aaKnown RBP38.3■■■■□ 3.72
AC004540.1-202ENST00000430548 CECR2Q9BXF3 1484 aa38.15■■■■□ 3.7
AC004540.1-202ENST00000430548 NCAPD3P42695 1498 aa37.01■■■■□ 3.51
AC004540.1-202ENST00000430548 SMARCA4P51532 1647 aa36.94■■■■□ 3.5
AC004540.1-202ENST00000430548 ATAD2BQ9ULI0 1458 aa36.88■■■■□ 3.49
AC004540.1-202ENST00000430548 HMGXB3Q12766 1538 aa36.85■■■■□ 3.49
AC004540.1-202ENST00000430548 SMARCA2P51531 1590 aa36.83■■■■□ 3.49
AC004540.1-202ENST00000430548 BAZ1AQ9NRL2 1556 aaPredicted RBP36.72■■■■□ 3.47
AC004540.1-202ENST00000430548 PEG3Q9GZU2 1588 aa36.65■■■■□ 3.46
AC004540.1-202ENST00000430548 CUX2O14529 1486 aa36.61■■■■□ 3.45
AC004540.1-202ENST00000430548 ERCC6Q03468 1493 aa36.53■■■■□ 3.44
AC004540.1-202ENST00000430548 BAZ1BQ9UIG0 1483 aaKnown RBP36.51■■■■□ 3.44
AC004540.1-202ENST00000430548 DNAJC5Q9H3Z4 198 aa36.41■■■■□ 3.42
AC004540.1-202ENST00000430548 NESP48681 1621 aa36.39■■■■□ 3.42
AC004540.1-202ENST00000430548 MROH2BQ7Z745 1585 aa36.39■■■■□ 3.42
AC004540.1-202ENST00000430548 LAMC3Q9Y6N6 1575 aa36.26■■■■□ 3.39
AC004540.1-202ENST00000430548 THOC2Q8NI27 1593 aaKnown RBP36.22■■■■□ 3.39
AC004540.1-202ENST00000430548 KIF21AQ7Z4S6 1674 aa36.1■■■■□ 3.37
AC004540.1-202ENST00000430548 WIZO95785 1651 aa36■■■■□ 3.35
AC004540.1-202ENST00000430548 PDS5BQ9NTI5 1447 aa35.9■■■■□ 3.34
AC004540.1-202ENST00000430548 CADPSQ9ULU8 1353 aa35.8■■■■□ 3.32
AC004540.1-202ENST00000430548 WDR62O43379 1518 aa35.67■■■■□ 3.3
AC004540.1-202ENST00000430548 MRC2Q9UBG0 1479 aa35.67■■■■□ 3.3
AC004540.1-202ENST00000430548 RSF1Q96T23 1441 aaPredicted RBP35.57■■■■□ 3.29
AC004540.1-202ENST00000430548 TOP2AP11388 1531 aaKnown RBP35.57■■■■□ 3.28
AC004540.1-202ENST00000430548 CEP164Q9UPV0 1460 aa35.51■■■■□ 3.28
AC004540.1-202ENST00000430548 CFTRP13569 1480 aa35.48■■■■□ 3.27
AC004540.1-202ENST00000430548 FANCD2Q9BXW9 1451 aa35.44■■■■□ 3.26
AC004540.1-202ENST00000430548 PRDM2Q13029 1718 aa35.39■■■■□ 3.26
AC004540.1-202ENST00000430548 URB2Q14146 1524 aaKnown RBP35.19■■■■□ 3.22
AC004540.1-202ENST00000430548 CCDC88BA6NC98 1476 aa35.04■■■■□ 3.2
AC004540.1-202ENST00000430548 TOPBP1Q92547 1522 aa34.81■■■■□ 3.16
AC004540.1-202ENST00000430548 IFT140Q96RY7 1462 aa34.79■■■■□ 3.16
AC004540.1-202ENST00000430548 DNMBPQ6XZF7 1577 aa34.74■■■■□ 3.15
AC004540.1-202ENST00000430548 ABCC8Q09428 1581 aa34.72■■■■□ 3.15
AC004540.1-202ENST00000430548 ZNF608Q9ULD9 1512 aaPredicted RBP34.71■■■■□ 3.15
AC004540.1-202ENST00000430548 OSCARQ8IYS5 282 aa34.69■■■■□ 3.14
AC004540.1-202ENST00000430548 TRIM41Q8WV44 630 aa34.67■■■■□ 3.14
AC004540.1-202ENST00000430548 EIF4G3O43432 1585 aaKnown RBP34.66■■■■□ 3.14
AC004540.1-202ENST00000430548 TARBP1Q13395 1621 aaKnown RBP34.59■■■■□ 3.13
AC004540.1-202ENST00000430548 RIMBP3CA6NJZ7 1639 aa34.51■■■■□ 3.11
AC004540.1-202ENST00000430548 RIMBP3BA6NNM3 1639 aa34.51■■■■□ 3.11
AC004540.1-202ENST00000430548 RIMBP3Q9UFD9 1639 aa34.51■■■■□ 3.11
AC004540.1-202ENST00000430548 POLA1P09884 1462 aaPredicted RBP34.46■■■■□ 3.11
AC004540.1-202ENST00000430548 CHD1O14646 1710 aa34.44■■■■□ 3.1
AC004540.1-202ENST00000430548 ARHGEF11O15085 1522 aa34.35■■■■□ 3.09
AC004540.1-202ENST00000430548 AQRO60306 1485 aaKnown RBP eCLIP34.33■■■■□ 3.09
AC004540.1-202ENST00000430548 WDR97A6NE52 1622 aa34.31■■■■□ 3.08
AC004540.1-202ENST00000430548 RAD54L2Q9Y4B4 1467 aa34.24■■■■□ 3.07
AC004540.1-202ENST00000430548 FGD5Q6ZNL6 1462 aa34.21■■■■□ 3.07
AC004540.1-202ENST00000430548 CUX1P39880 1505 aa34.21■■■■□ 3.07
AC004540.1-202ENST00000430548 SOGA1O94964 1423 aa34.17■■■■□ 3.06
AC004540.1-202ENST00000430548 TDRD9Q8NDG6 1382 aaKnown RBP34.07■■■■□ 3.04
AC004540.1-202ENST00000430548 SNAPC4Q5SXM2 1469 aa34.07■■■■□ 3.04
AC004540.1-202ENST00000430548 MAGI1Q96QZ7 1491 aaPredicted RBP34.02■■■■□ 3.04
AC004540.1-202ENST00000430548 CLASP1Q7Z460 1538 aa34.02■■■■□ 3.04
AC004540.1-202ENST00000430548 ARAP1Q96P48 1450 aa34.01■■■■□ 3.04
AC004540.1-202ENST00000430548 PBRM1Q86U86 1689 aa34.01■■■■□ 3.04
AC004540.1-202ENST00000430548 GRIN2BQ13224 1484 aa33.96■■■■□ 3.03
AC004540.1-202ENST00000430548 SYNJ1O43426 1573 aa33.94■■■■□ 3.02
AC004540.1-202ENST00000430548 ABCA5Q8WWZ7 1642 aa33.92■■■■□ 3.02
AC004540.1-202ENST00000430548 FBLN2P98095 1184 aa33.91■■■■□ 3.02
AC004540.1-202ENST00000430548 SYNJ2O15056 1496 aa33.88■■■■□ 3.01
AC004540.1-202ENST00000430548 ABCA10Q8WWZ4 1543 aa33.86■■■■□ 3.01
AC004540.1-202ENST00000430548 CYB5RLQ6IPT4 315 aa33.83■■■■□ 3.01
AC004540.1-202ENST00000430548 GAPVD1Q14C86 1478 aa33.82■■■■□ 3.01
AC004540.1-202ENST00000430548 BIVM-ERCC5R4GMW8 1640 aa33.79■■■■□ 3
AC004540.1-202ENST00000430548 CHMP7Q8WUX9 453 aaPredicted RBP33.73■■■□□ 2.99
AC004540.1-202ENST00000430548 TOP2BQ02880 1626 aa33.71■■■□□ 2.99
AC004540.1-202ENST00000430548 SUPT5HO00267 1087 aaKnown RBP33.7■■■□□ 2.99
AC004540.1-202ENST00000430548 ADAMTS12P58397 1594 aa33.64■■■□□ 2.98
AC004540.1-202ENST00000430548 WRNQ14191 1432 aaPredicted RBP eCLIP33.62■■■□□ 2.97
AC004540.1-202ENST00000430548 GRIN2AQ12879 1464 aa33.56■■■□□ 2.96
AC004540.1-202ENST00000430548 CEP170Q5SW79 1584 aa33.49■■■□□ 2.95
AC004540.1-202ENST00000430548 NUP160Q12769 1436 aa33.47■■■□□ 2.95
AC004540.1-202ENST00000430548 ERICH3Q5RHP9 1530 aa33.47■■■□□ 2.95
AC004540.1-202ENST00000430548 SHROOM2Q13796 1616 aa33.44■■■□□ 2.94
AC004540.1-202ENST00000430548 TRHP20396 242 aaPredicted RBP33.41■■■□□ 2.94
AC004540.1-202ENST00000430548 ERCC6L2Q5T890 1561 aa33.4■■■□□ 2.94
AC004540.1-202ENST00000430548 FHAD1B1AJZ9 1412 aa33.39■■■□□ 2.94
AC004540.1-202ENST00000430548 RUSC2Q8N2Y8 1516 aa33.19■■■□□ 2.9
AC004540.1-202ENST00000430548 CUL7Q14999 1698 aa33.04■■■□□ 2.88
AC004540.1-202ENST00000430548 PRG4Q92954 1404 aaPredicted RBP33.02■■■□□ 2.88
AC004540.1-202ENST00000430548 KIF13AQ9H1H9 1805 aa33.01■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms