RNA–Protein interactions for RNA: ENST00000430547.5

NUP50-208, Transcript of nucleoporin 50, humanhuman

TSL 4

Gene NUP50, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-208ENST00000430547 NISCHQ9Y2I1 1504 aa43.23■■■■■ 4.51
NUP50-208ENST00000430547 CCDC180Q9P1Z9 1646 aa38.71■■■■□ 3.79
NUP50-208ENST00000430547 ABCC9O60706 1549 aa38.15■■■■□ 3.7
NUP50-208ENST00000430547 RB1CC1Q8TDY2 1594 aa36.58■■■■□ 3.45
NUP50-208ENST00000430547 NACADO15069 1562 aa36.42■■■■□ 3.42
NUP50-208ENST00000430547 DCAF8L2P0C7V8 631 aa36.31■■■■□ 3.4
NUP50-208ENST00000430547 MYO15BQ96JP2 1530 aa36.04■■■■□ 3.36
NUP50-208ENST00000430547 ZCCHC6Q5VYS8 1495 aaKnown RBP35.94■■■■□ 3.34
NUP50-208ENST00000430547 UNC13AQ9UPW8 1703 aa35.8■■■■□ 3.32
NUP50-208ENST00000430547 DCAF1Q9Y4B6 1507 aa35.75■■■■□ 3.31
NUP50-208ENST00000430547 PABPN1Q86U42 306 aaKnown RBP eCLIP35.54■■■■□ 3.28
NUP50-208ENST00000430547 BICRAQ9NZM4 1560 aa35.41■■■■□ 3.26
NUP50-208ENST00000430547 SCRIBQ14160 1630 aa35.27■■■■□ 3.24
NUP50-208ENST00000430547 DNAJC5BQ9UF47 199 aa35.22■■■■□ 3.23
NUP50-208ENST00000430547 SHROOM4Q9ULL8 1493 aa35.05■■■■□ 3.2
NUP50-208ENST00000430547 EIF4G1Q04637 1599 aaKnown RBP34.55■■■■□ 3.12
NUP50-208ENST00000430547 CC2D2AQ9P2K1 1620 aa34.52■■■■□ 3.12
NUP50-208ENST00000430547 CECR2Q9BXF3 1484 aa34.32■■■■□ 3.08
NUP50-208ENST00000430547 SMARCA4P51532 1647 aa33.68■■■□□ 2.98
NUP50-208ENST00000430547 BAZ1AQ9NRL2 1556 aaPredicted RBP33.59■■■□□ 2.97
NUP50-208ENST00000430547 NCAPD3P42695 1498 aa33.55■■■□□ 2.96
NUP50-208ENST00000430547 SMARCA2P51531 1590 aa33.53■■■□□ 2.96
NUP50-208ENST00000430547 ATAD2BQ9ULI0 1458 aa33.52■■■□□ 2.96
NUP50-208ENST00000430547 HMGXB3Q12766 1538 aa33.42■■■□□ 2.94
NUP50-208ENST00000430547 PEG3Q9GZU2 1588 aa33.32■■■□□ 2.92
NUP50-208ENST00000430547 MROH2BQ7Z745 1585 aa33.3■■■□□ 2.92
NUP50-208ENST00000430547 BAZ1BQ9UIG0 1483 aaKnown RBP33.3■■■□□ 2.92
NUP50-208ENST00000430547 WIZO95785 1651 aa32.99■■■□□ 2.87
NUP50-208ENST00000430547 ERCC6Q03468 1493 aa32.97■■■□□ 2.87
NUP50-208ENST00000430547 NESP48681 1621 aa32.88■■■□□ 2.85
NUP50-208ENST00000430547 LAMC3Q9Y6N6 1575 aa32.81■■■□□ 2.84
NUP50-208ENST00000430547 RSF1Q96T23 1441 aaPredicted RBP32.77■■■□□ 2.84
NUP50-208ENST00000430547 CUX2O14529 1486 aa32.71■■■□□ 2.83
NUP50-208ENST00000430547 TOP2AP11388 1531 aaKnown RBP32.61■■■□□ 2.81
NUP50-208ENST00000430547 KIF21AQ7Z4S6 1674 aa32.59■■■□□ 2.81
NUP50-208ENST00000430547 PDS5BQ9NTI5 1447 aa32.57■■■□□ 2.8
NUP50-208ENST00000430547 CADPSQ9ULU8 1353 aa32.56■■■□□ 2.8
NUP50-208ENST00000430547 THOC2Q8NI27 1593 aaKnown RBP32.51■■■□□ 2.79
NUP50-208ENST00000430547 CFTRP13569 1480 aa32.29■■■□□ 2.76
NUP50-208ENST00000430547 MRC2Q9UBG0 1479 aa32.26■■■□□ 2.75
NUP50-208ENST00000430547 CEP164Q9UPV0 1460 aa32.25■■■□□ 2.75
NUP50-208ENST00000430547 FANCD2Q9BXW9 1451 aa32.23■■■□□ 2.75
NUP50-208ENST00000430547 PRDM2Q13029 1718 aa32.2■■■□□ 2.74
NUP50-208ENST00000430547 CCDC88BA6NC98 1476 aa32.17■■■□□ 2.74
NUP50-208ENST00000430547 WDR62O43379 1518 aa32.16■■■□□ 2.74
NUP50-208ENST00000430547 DNAJC5Q9H3Z4 198 aa32.06■■■□□ 2.72
NUP50-208ENST00000430547 URB2Q14146 1524 aaKnown RBP31.9■■■□□ 2.7
NUP50-208ENST00000430547 SUPT5HO00267 1087 aaKnown RBP31.72■■■□□ 2.67
NUP50-208ENST00000430547 TOPBP1Q92547 1522 aa31.67■■■□□ 2.66
NUP50-208ENST00000430547 ABCC8Q09428 1581 aa31.67■■■□□ 2.66
NUP50-208ENST00000430547 DNMBPQ6XZF7 1577 aa31.64■■■□□ 2.65
NUP50-208ENST00000430547 IFT140Q96RY7 1462 aa31.57■■■□□ 2.64
NUP50-208ENST00000430547 ZNF608Q9ULD9 1512 aaPredicted RBP31.42■■■□□ 2.62
NUP50-208ENST00000430547 EIF4G3O43432 1585 aaKnown RBP31.37■■■□□ 2.61
NUP50-208ENST00000430547 POLA1P09884 1462 aaPredicted RBP31.36■■■□□ 2.61
NUP50-208ENST00000430547 TARBP1Q13395 1621 aaKnown RBP31.35■■■□□ 2.61
NUP50-208ENST00000430547 CUX1P39880 1505 aa31.28■■■□□ 2.6
NUP50-208ENST00000430547 OSCARQ8IYS5 282 aa31.26■■■□□ 2.59
NUP50-208ENST00000430547 FGD5Q6ZNL6 1462 aa31.26■■■□□ 2.59
NUP50-208ENST00000430547 SOGA1O94964 1423 aa31.23■■■□□ 2.59
NUP50-208ENST00000430547 RAD54L2Q9Y4B4 1467 aa31.22■■■□□ 2.59
NUP50-208ENST00000430547 AQRO60306 1485 aaKnown RBP eCLIP31.2■■■□□ 2.586e-6■□□□□ 8.5
NUP50-208ENST00000430547 WDR97A6NE52 1622 aa31.13■■■□□ 2.57
NUP50-208ENST00000430547 TDRD9Q8NDG6 1382 aaKnown RBP31.08■■■□□ 2.57
NUP50-208ENST00000430547 CHD1O14646 1710 aa31.08■■■□□ 2.57
NUP50-208ENST00000430547 BIVM-ERCC5R4GMW8 1640 aa30.98■■■□□ 2.55
NUP50-208ENST00000430547 WRNQ14191 1432 aaPredicted RBP eCLIP30.96■■■□□ 2.55
NUP50-208ENST00000430547 TOP2BQ02880 1626 aa30.95■■■□□ 2.55
NUP50-208ENST00000430547 FBLN2P98095 1184 aa30.95■■■□□ 2.55
NUP50-208ENST00000430547 SNAPC4Q5SXM2 1469 aa30.94■■■□□ 2.54
NUP50-208ENST00000430547 PBRM1Q86U86 1689 aa30.93■■■□□ 2.54
NUP50-208ENST00000430547 TRIM41Q8WV44 630 aa30.93■■■□□ 2.54
NUP50-208ENST00000430547 GRIN2BQ13224 1484 aa30.93■■■□□ 2.54
NUP50-208ENST00000430547 ABCA10Q8WWZ4 1543 aa30.92■■■□□ 2.54
NUP50-208ENST00000430547 SYNJ1O43426 1573 aa30.92■■■□□ 2.54
NUP50-208ENST00000430547 MAGI1Q96QZ7 1491 aaPredicted RBP30.89■■■□□ 2.54
NUP50-208ENST00000430547 GAPVD1Q14C86 1478 aa30.88■■■□□ 2.53
NUP50-208ENST00000430547 RIMBP3CA6NJZ7 1639 aa30.86■■■□□ 2.53
NUP50-208ENST00000430547 RIMBP3BA6NNM3 1639 aa30.86■■■□□ 2.53
NUP50-208ENST00000430547 ABCA5Q8WWZ7 1642 aa30.86■■■□□ 2.53
NUP50-208ENST00000430547 RIMBP3Q9UFD9 1639 aa30.86■■■□□ 2.53
NUP50-208ENST00000430547 CHMP7Q8WUX9 453 aaPredicted RBP30.79■■■□□ 2.52
NUP50-208ENST00000430547 ARHGEF11O15085 1522 aa30.78■■■□□ 2.52
NUP50-208ENST00000430547 SYNJ2O15056 1496 aa30.77■■■□□ 2.52
NUP50-208ENST00000430547 CLASP1Q7Z460 1538 aa30.64■■■□□ 2.5
NUP50-208ENST00000430547 ADAMTS12P58397 1594 aa30.6■■■□□ 2.49
NUP50-208ENST00000430547 ERICH3Q5RHP9 1530 aa30.57■■■□□ 2.48
NUP50-208ENST00000430547 GRIN2AQ12879 1464 aa30.53■■■□□ 2.48
NUP50-208ENST00000430547 FHAD1B1AJZ9 1412 aa30.5■■■□□ 2.47
NUP50-208ENST00000430547 CYB5RLQ6IPT4 315 aa30.49■■■□□ 2.47
NUP50-208ENST00000430547 ARAP1Q96P48 1450 aa30.48■■■□□ 2.47
NUP50-208ENST00000430547 CEP170Q5SW79 1584 aa30.4■■■□□ 2.46
NUP50-208ENST00000430547 NUP160Q12769 1436 aa30.37■■■□□ 2.45
NUP50-208ENST00000430547 KIF27Q86VH2 1401 aa30.35■■■□□ 2.45
NUP50-208ENST00000430547 CUL7Q14999 1698 aa30.29■■■□□ 2.44
NUP50-208ENST00000430547 SHROOM2Q13796 1616 aa30.24■■■□□ 2.43
NUP50-208ENST00000430547 IGF1RP08069 1367 aa30.19■■■□□ 2.42
NUP50-208ENST00000430547 ERCC6L2Q5T890 1561 aa30.18■■■□□ 2.42
NUP50-208ENST00000430547 RUSC2Q8N2Y8 1516 aa30.17■■■□□ 2.42
NUP50-208ENST00000430547 PRG4Q92954 1404 aaPredicted RBP30.06■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms