RNA–Protein interactions for RNA: ENST00000429846.1

MSH5-208, Transcript of mutS homolog 5, humanhuman

TSL 3

Gene MSH5, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-208ENST00000429846 NISCHQ9Y2I1 1504 aa37.38■■■■□ 3.57
MSH5-208ENST00000429846 CCDC180Q9P1Z9 1646 aa33.63■■■□□ 2.97
MSH5-208ENST00000429846 ABCC9O60706 1549 aa33.4■■■□□ 2.94
MSH5-208ENST00000429846 RB1CC1Q8TDY2 1594 aa31.93■■■□□ 2.7
MSH5-208ENST00000429846 NACADO15069 1562 aa31.73■■■□□ 2.67
MSH5-208ENST00000429846 MYO15BQ96JP2 1530 aa31.36■■■□□ 2.61
MSH5-208ENST00000429846 DCAF8L2P0C7V8 631 aa31.35■■■□□ 2.61
MSH5-208ENST00000429846 UNC13AQ9UPW8 1703 aa31.21■■■□□ 2.59
MSH5-208ENST00000429846 DNAJC5BQ9UF47 199 aa31.18■■■□□ 2.58
MSH5-208ENST00000429846 PABPN1Q86U42 306 aaKnown RBP eCLIP31.02■■■□□ 2.561e-6■■■□□ 14.8
MSH5-208ENST00000429846 ZCCHC6Q5VYS8 1495 aaKnown RBP31.01■■■□□ 2.56
MSH5-208ENST00000429846 DCAF1Q9Y4B6 1507 aa30.96■■■□□ 2.55
MSH5-208ENST00000429846 BICRAQ9NZM4 1560 aa30.95■■■□□ 2.54
MSH5-208ENST00000429846 SHROOM4Q9ULL8 1493 aa30.68■■■□□ 2.5
MSH5-208ENST00000429846 SCRIBQ14160 1630 aa30.53■■■□□ 2.48
MSH5-208ENST00000429846 CC2D2AQ9P2K1 1620 aa30.24■■■□□ 2.43
MSH5-208ENST00000429846 EIF4G1Q04637 1599 aaKnown RBP30.2■■■□□ 2.43
MSH5-208ENST00000429846 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
MSH5-208ENST00000429846 NCAPD3P42695 1498 aa29.25■■■□□ 2.27
MSH5-208ENST00000429846 SMARCA4P51532 1647 aa29.17■■■□□ 2.26
MSH5-208ENST00000429846 ATAD2BQ9ULI0 1458 aa29.14■■■□□ 2.26
MSH5-208ENST00000429846 SMARCA2P51531 1590 aa29.13■■■□□ 2.25
MSH5-208ENST00000429846 HMGXB3Q12766 1538 aa29.1■■■□□ 2.25
MSH5-208ENST00000429846 BAZ1AQ9NRL2 1556 aaPredicted RBP29.05■■■□□ 2.24
MSH5-208ENST00000429846 PEG3Q9GZU2 1588 aa28.93■■■□□ 2.22
MSH5-208ENST00000429846 ERCC6Q03468 1493 aa28.89■■■□□ 2.22
MSH5-208ENST00000429846 BAZ1BQ9UIG0 1483 aaKnown RBP28.89■■■□□ 2.22
MSH5-208ENST00000429846 CUX2O14529 1486 aa28.87■■■□□ 2.21
MSH5-208ENST00000429846 MROH2BQ7Z745 1585 aa28.76■■■□□ 2.19
MSH5-208ENST00000429846 NESP48681 1621 aa28.7■■■□□ 2.19
MSH5-208ENST00000429846 DNAJC5Q9H3Z4 198 aa28.68■■■□□ 2.18
MSH5-208ENST00000429846 LAMC3Q9Y6N6 1575 aa28.63■■■□□ 2.17
MSH5-208ENST00000429846 THOC2Q8NI27 1593 aaKnown RBP28.5■■■□□ 2.15
MSH5-208ENST00000429846 WIZO95785 1651 aa28.43■■■□□ 2.14
MSH5-208ENST00000429846 PDS5BQ9NTI5 1447 aa28.42■■■□□ 2.14
MSH5-208ENST00000429846 KIF21AQ7Z4S6 1674 aa28.42■■■□□ 2.14
MSH5-208ENST00000429846 CADPSQ9ULU8 1353 aa28.34■■■□□ 2.13
MSH5-208ENST00000429846 RSF1Q96T23 1441 aaPredicted RBP28.18■■■□□ 2.1
MSH5-208ENST00000429846 MRC2Q9UBG0 1479 aa28.17■■■□□ 2.1
MSH5-208ENST00000429846 WDR62O43379 1518 aa28.13■■■□□ 2.09
MSH5-208ENST00000429846 TOP2AP11388 1531 aaKnown RBP28.13■■■□□ 2.09
MSH5-208ENST00000429846 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
MSH5-208ENST00000429846 CFTRP13569 1480 aa28.05■■■□□ 2.08
MSH5-208ENST00000429846 FANCD2Q9BXW9 1451 aa28.02■■■□□ 2.08
MSH5-208ENST00000429846 PRDM2Q13029 1718 aa27.89■■■□□ 2.05
MSH5-208ENST00000429846 URB2Q14146 1524 aaKnown RBP27.77■■■□□ 2.04
MSH5-208ENST00000429846 CCDC88BA6NC98 1476 aa27.74■■■□□ 2.03
MSH5-208ENST00000429846 IFT140Q96RY7 1462 aa27.51■■■□□ 2
MSH5-208ENST00000429846 ABCC8Q09428 1581 aa27.51■■□□□ 1.99
MSH5-208ENST00000429846 TOPBP1Q92547 1522 aa27.51■■□□□ 1.99
MSH5-208ENST00000429846 OSCARQ8IYS5 282 aa27.47■■□□□ 1.99
MSH5-208ENST00000429846 DNMBPQ6XZF7 1577 aa27.45■■□□□ 1.99
MSH5-208ENST00000429846 ZNF608Q9ULD9 1512 aaPredicted RBP27.4■■□□□ 1.98
MSH5-208ENST00000429846 TRIM41Q8WV44 630 aa27.38■■□□□ 1.97
MSH5-208ENST00000429846 EIF4G3O43432 1585 aaKnown RBP27.34■■□□□ 1.97
MSH5-208ENST00000429846 TARBP1Q13395 1621 aaKnown RBP27.27■■□□□ 1.96
MSH5-208ENST00000429846 POLA1P09884 1462 aaPredicted RBP27.23■■□□□ 1.95
MSH5-208ENST00000429846 RIMBP3CA6NJZ7 1639 aa27.16■■□□□ 1.94
MSH5-208ENST00000429846 RIMBP3BA6NNM3 1639 aa27.16■■□□□ 1.94
MSH5-208ENST00000429846 RIMBP3Q9UFD9 1639 aa27.16■■□□□ 1.94
MSH5-208ENST00000429846 AQRO60306 1485 aaKnown RBP eCLIP27.13■■□□□ 1.93
MSH5-208ENST00000429846 CHD1O14646 1710 aa27.12■■□□□ 1.93
MSH5-208ENST00000429846 WDR97A6NE52 1622 aa27.11■■□□□ 1.93
MSH5-208ENST00000429846 ARHGEF11O15085 1522 aa27.08■■□□□ 1.93
MSH5-208ENST00000429846 SOGA1O94964 1423 aa27.07■■□□□ 1.92
MSH5-208ENST00000429846 RAD54L2Q9Y4B4 1467 aa27.06■■□□□ 1.92
MSH5-208ENST00000429846 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
MSH5-208ENST00000429846 CUX1P39880 1505 aa27.03■■□□□ 1.92
MSH5-208ENST00000429846 TDRD9Q8NDG6 1382 aaKnown RBP26.97■■□□□ 1.91
MSH5-208ENST00000429846 SNAPC4Q5SXM2 1469 aa26.92■■□□□ 1.9
MSH5-208ENST00000429846 FBLN2P98095 1184 aa26.91■■□□□ 1.9
MSH5-208ENST00000429846 MAGI1Q96QZ7 1491 aaPredicted RBP26.91■■□□□ 1.9
MSH5-208ENST00000429846 GRIN2BQ13224 1484 aa26.87■■□□□ 1.89
MSH5-208ENST00000429846 SUPT5HO00267 1087 aaKnown RBP26.86■■□□□ 1.89
MSH5-208ENST00000429846 SYNJ1O43426 1573 aa26.82■■□□□ 1.88
MSH5-208ENST00000429846 PBRM1Q86U86 1689 aa26.82■■□□□ 1.88
MSH5-208ENST00000429846 CLASP1Q7Z460 1538 aa26.8■■□□□ 1.88
MSH5-208ENST00000429846 SYNJ2O15056 1496 aa26.8■■□□□ 1.88
MSH5-208ENST00000429846 ARAP1Q96P48 1450 aa26.8■■□□□ 1.88
MSH5-208ENST00000429846 ABCA10Q8WWZ4 1543 aa26.79■■□□□ 1.88
MSH5-208ENST00000429846 GAPVD1Q14C86 1478 aa26.77■■□□□ 1.88
MSH5-208ENST00000429846 CYB5RLQ6IPT4 315 aa26.77■■□□□ 1.88
MSH5-208ENST00000429846 CHMP7Q8WUX9 453 aaPredicted RBP26.77■■□□□ 1.88
MSH5-208ENST00000429846 ABCA5Q8WWZ7 1642 aa26.76■■□□□ 1.87
MSH5-208ENST00000429846 BIVM-ERCC5R4GMW8 1640 aa26.69■■□□□ 1.86
MSH5-208ENST00000429846 TOP2BQ02880 1626 aa26.67■■□□□ 1.86
MSH5-208ENST00000429846 WRNQ14191 1432 aaPredicted RBP eCLIP26.66■■□□□ 1.86
MSH5-208ENST00000429846 ADAMTS12P58397 1594 aa26.55■■□□□ 1.84
MSH5-208ENST00000429846 GRIN2AQ12879 1464 aa26.53■■□□□ 1.84
MSH5-208ENST00000429846 ERICH3Q5RHP9 1530 aa26.48■■□□□ 1.83
MSH5-208ENST00000429846 TRHP20396 242 aaPredicted RBP26.46■■□□□ 1.83
MSH5-208ENST00000429846 FHAD1B1AJZ9 1412 aa26.45■■□□□ 1.82
MSH5-208ENST00000429846 NUP160Q12769 1436 aa26.45■■□□□ 1.82
MSH5-208ENST00000429846 CEP170Q5SW79 1584 aa26.42■■□□□ 1.82
MSH5-208ENST00000429846 SHROOM2Q13796 1616 aa26.36■■□□□ 1.81
MSH5-208ENST00000429846 ERCC6L2Q5T890 1561 aa26.32■■□□□ 1.8
MSH5-208ENST00000429846 RUSC2Q8N2Y8 1516 aa26.19■■□□□ 1.78
MSH5-208ENST00000429846 PRG4Q92954 1404 aaPredicted RBP26.14■■□□□ 1.77
MSH5-208ENST00000429846 CUL7Q14999 1698 aa26.13■■□□□ 1.77
MSH5-208ENST00000429846 KIF27Q86VH2 1401 aa26.12■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms