RNA–Protein interactions for RNA: ENST00000428274.5

PHF1-205, Transcript of PHD finger protein 1, humanhuman

TSL 5

Gene PHF1, Length 836 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-205ENST00000428274 NISCHQ9Y2I1 1504 aa32.34■■■□□ 2.77
PHF1-205ENST00000428274 CCDC180Q9P1Z9 1646 aa28.84■■■□□ 2.21
PHF1-205ENST00000428274 ABCC9O60706 1549 aa28.64■■■□□ 2.18
PHF1-205ENST00000428274 RB1CC1Q8TDY2 1594 aa27.23■■□□□ 1.95
PHF1-205ENST00000428274 NACADO15069 1562 aa27.17■■□□□ 1.94
PHF1-205ENST00000428274 DCAF8L2P0C7V8 631 aa27.12■■□□□ 1.93
PHF1-205ENST00000428274 MYO15BQ96JP2 1530 aa26.97■■□□□ 1.91
PHF1-205ENST00000428274 DNAJC5BQ9UF47 199 aa26.93■■□□□ 1.9
PHF1-205ENST00000428274 ZCCHC6Q5VYS8 1495 aaKnown RBP26.88■■□□□ 1.89
PHF1-205ENST00000428274 PABPN1Q86U42 306 aaKnown RBP eCLIP26.8■■□□□ 1.88
PHF1-205ENST00000428274 DCAF1Q9Y4B6 1507 aa26.76■■□□□ 1.87
PHF1-205ENST00000428274 UNC13AQ9UPW8 1703 aa26.67■■□□□ 1.86
PHF1-205ENST00000428274 BICRAQ9NZM4 1560 aa26.48■■□□□ 1.83
PHF1-205ENST00000428274 SCRIBQ14160 1630 aa26.25■■□□□ 1.79
PHF1-205ENST00000428274 SHROOM4Q9ULL8 1493 aa26.14■■□□□ 1.78
PHF1-205ENST00000428274 CC2D2AQ9P2K1 1620 aa25.78■■□□□ 1.72
PHF1-205ENST00000428274 EIF4G1Q04637 1599 aaKnown RBP25.76■■□□□ 1.71
PHF1-205ENST00000428274 CECR2Q9BXF3 1484 aa25.74■■□□□ 1.71
PHF1-205ENST00000428274 SMARCA4P51532 1647 aa25.13■■□□□ 1.61
PHF1-205ENST00000428274 NCAPD3P42695 1498 aa25.09■■□□□ 1.61
PHF1-205ENST00000428274 BAZ1AQ9NRL2 1556 aaPredicted RBP25.05■■□□□ 1.6
PHF1-205ENST00000428274 ATAD2BQ9ULI0 1458 aa25.05■■□□□ 1.6
PHF1-205ENST00000428274 SMARCA2P51531 1590 aa25■■□□□ 1.59
PHF1-205ENST00000428274 HMGXB3Q12766 1538 aa24.92■■□□□ 1.58
PHF1-205ENST00000428274 MROH2BQ7Z745 1585 aa24.92■■□□□ 1.58
PHF1-205ENST00000428274 PEG3Q9GZU2 1588 aa24.92■■□□□ 1.58
PHF1-205ENST00000428274 BAZ1BQ9UIG0 1483 aaKnown RBP24.81■■□□□ 1.56
PHF1-205ENST00000428274 NESP48681 1621 aa24.68■■□□□ 1.54
PHF1-205ENST00000428274 WIZO95785 1651 aa24.63■■□□□ 1.53
PHF1-205ENST00000428274 ERCC6Q03468 1493 aa24.61■■□□□ 1.53
PHF1-205ENST00000428274 RSF1Q96T23 1441 aaPredicted RBP24.56■■□□□ 1.52
PHF1-205ENST00000428274 CUX2O14529 1486 aa24.49■■□□□ 1.51
PHF1-205ENST00000428274 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
PHF1-205ENST00000428274 LAMC3Q9Y6N6 1575 aa24.43■■□□□ 1.5
PHF1-205ENST00000428274 TOP2AP11388 1531 aaKnown RBP24.35■■□□□ 1.49
PHF1-205ENST00000428274 CADPSQ9ULU8 1353 aa24.33■■□□□ 1.49
PHF1-205ENST00000428274 PDS5BQ9NTI5 1447 aa24.27■■□□□ 1.48
PHF1-205ENST00000428274 THOC2Q8NI27 1593 aaKnown RBP24.25■■□□□ 1.47
PHF1-205ENST00000428274 KIF21AQ7Z4S6 1674 aa24.24■■□□□ 1.47
PHF1-205ENST00000428274 CFTRP13569 1480 aa24.15■■□□□ 1.46
PHF1-205ENST00000428274 CCDC88BA6NC98 1476 aa24.07■■□□□ 1.44
PHF1-205ENST00000428274 MRC2Q9UBG0 1479 aa24.05■■□□□ 1.44
PHF1-205ENST00000428274 FANCD2Q9BXW9 1451 aa24.03■■□□□ 1.44
PHF1-205ENST00000428274 CEP164Q9UPV0 1460 aa24■■□□□ 1.43
PHF1-205ENST00000428274 WDR62O43379 1518 aa23.98■■□□□ 1.43
PHF1-205ENST00000428274 PRDM2Q13029 1718 aa23.95■■□□□ 1.42
PHF1-205ENST00000428274 URB2Q14146 1524 aaKnown RBP23.84■■□□□ 1.41
PHF1-205ENST00000428274 SUPT5HO00267 1087 aaKnown RBP23.72■■□□□ 1.39
PHF1-205ENST00000428274 TOPBP1Q92547 1522 aa23.64■■□□□ 1.37
PHF1-205ENST00000428274 ABCC8Q09428 1581 aa23.62■■□□□ 1.37
PHF1-205ENST00000428274 DNMBPQ6XZF7 1577 aa23.58■■□□□ 1.37
PHF1-205ENST00000428274 ZNF608Q9ULD9 1512 aaPredicted RBP23.56■■□□□ 1.36
PHF1-205ENST00000428274 IFT140Q96RY7 1462 aa23.53■■□□□ 1.36
PHF1-205ENST00000428274 OSCARQ8IYS5 282 aa23.49■■□□□ 1.35
PHF1-205ENST00000428274 TRIM41Q8WV44 630 aa23.48■■□□□ 1.35
PHF1-205ENST00000428274 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
PHF1-205ENST00000428274 POLA1P09884 1462 aaPredicted RBP23.42■■□□□ 1.34
PHF1-205ENST00000428274 CUX1P39880 1505 aa23.38■■□□□ 1.33
PHF1-205ENST00000428274 AQRO60306 1485 aaKnown RBP eCLIP23.36■■□□□ 1.335e-8■■■□□ 17.4
PHF1-205ENST00000428274 EIF4G3O43432 1585 aaKnown RBP23.33■■□□□ 1.33
PHF1-205ENST00000428274 RAD54L2Q9Y4B4 1467 aa23.33■■□□□ 1.33
PHF1-205ENST00000428274 FGD5Q6ZNL6 1462 aa23.32■■□□□ 1.32
PHF1-205ENST00000428274 SOGA1O94964 1423 aa23.31■■□□□ 1.32
PHF1-205ENST00000428274 TDRD9Q8NDG6 1382 aaKnown RBP23.27■■□□□ 1.31
PHF1-205ENST00000428274 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
PHF1-205ENST00000428274 FBLN2P98095 1184 aa23.16■■□□□ 1.3
PHF1-205ENST00000428274 WRNQ14191 1432 aaPredicted RBP eCLIP23.13■■□□□ 1.29
PHF1-205ENST00000428274 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
PHF1-205ENST00000428274 BIVM-ERCC5R4GMW8 1640 aa23.12■■□□□ 1.29
PHF1-205ENST00000428274 SYNJ1O43426 1573 aa23.1■■□□□ 1.29
PHF1-205ENST00000428274 ABCA10Q8WWZ4 1543 aa23.1■■□□□ 1.29
PHF1-205ENST00000428274 RIMBP3CA6NJZ7 1639 aa23.1■■□□□ 1.29
PHF1-205ENST00000428274 RIMBP3BA6NNM3 1639 aa23.1■■□□□ 1.29
PHF1-205ENST00000428274 RIMBP3Q9UFD9 1639 aa23.1■■□□□ 1.29
PHF1-205ENST00000428274 CHD1O14646 1710 aa23.1■■□□□ 1.29
PHF1-205ENST00000428274 ARHGEF11O15085 1522 aa23.08■■□□□ 1.29
PHF1-205ENST00000428274 GRIN2BQ13224 1484 aa23.06■■□□□ 1.28
PHF1-205ENST00000428274 SNAPC4Q5SXM2 1469 aa23.06■■□□□ 1.28
PHF1-205ENST00000428274 GAPVD1Q14C86 1478 aa23.04■■□□□ 1.28
PHF1-205ENST00000428274 ABCA5Q8WWZ7 1642 aa23.03■■□□□ 1.28
PHF1-205ENST00000428274 MAGI1Q96QZ7 1491 aaPredicted RBP23.03■■□□□ 1.28
PHF1-205ENST00000428274 CYB5RLQ6IPT4 315 aa23.01■■□□□ 1.27
PHF1-205ENST00000428274 PBRM1Q86U86 1689 aa23■■□□□ 1.27
PHF1-205ENST00000428274 CHMP7Q8WUX9 453 aaPredicted RBP22.98■■□□□ 1.27
PHF1-205ENST00000428274 SYNJ2O15056 1496 aa22.94■■□□□ 1.26
PHF1-205ENST00000428274 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
PHF1-205ENST00000428274 CLASP1Q7Z460 1538 aa22.87■■□□□ 1.25
PHF1-205ENST00000428274 ERICH3Q5RHP9 1530 aa22.82■■□□□ 1.24
PHF1-205ENST00000428274 ADAMTS12P58397 1594 aa22.8■■□□□ 1.24
PHF1-205ENST00000428274 GRIN2AQ12879 1464 aa22.77■■□□□ 1.24
PHF1-205ENST00000428274 FHAD1B1AJZ9 1412 aa22.76■■□□□ 1.23
PHF1-205ENST00000428274 NUP160Q12769 1436 aa22.7■■□□□ 1.22
PHF1-205ENST00000428274 CEP170Q5SW79 1584 aa22.67■■□□□ 1.22
PHF1-205ENST00000428274 KIF27Q86VH2 1401 aa22.66■■□□□ 1.22
PHF1-205ENST00000428274 TRHP20396 242 aaPredicted RBP22.65■■□□□ 1.22
PHF1-205ENST00000428274 IGF1RP08069 1367 aa22.64■■□□□ 1.22
PHF1-205ENST00000428274 ERCC6L2Q5T890 1561 aa22.63■■□□□ 1.21
PHF1-205ENST00000428274 SHROOM2Q13796 1616 aa22.57■■□□□ 1.2
PHF1-205ENST00000428274 CUL7Q14999 1698 aa22.55■■□□□ 1.2
PHF1-205ENST00000428274 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms