RNA–Protein interactions for RNA: ENST00000427785.5

RFC4-206, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-206ENST00000427785 NISCHQ9Y2I1 1504 aa28.11■■■□□ 2.09
RFC4-206ENST00000427785 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
RFC4-206ENST00000427785 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
RFC4-206ENST00000427785 ABCC9O60706 1549 aa23.54■■□□□ 1.36
RFC4-206ENST00000427785 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
RFC4-206ENST00000427785 DCAF8L2P0C7V8 631 aa23.13■■□□□ 1.29
RFC4-206ENST00000427785 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
RFC4-206ENST00000427785 NACADO15069 1562 aa23.02■■□□□ 1.28
RFC4-206ENST00000427785 RB1CC1Q8TDY2 1594 aa22.92■■□□□ 1.26
RFC4-206ENST00000427785 SHROOM4Q9ULL8 1493 aa22.74■■□□□ 1.23
RFC4-206ENST00000427785 SCRIBQ14160 1630 aa22.74■■□□□ 1.23
RFC4-206ENST00000427785 UNC13AQ9UPW8 1703 aa22.64■■□□□ 1.21
RFC4-206ENST00000427785 BICRAQ9NZM4 1560 aa22.25■■□□□ 1.15
RFC4-206ENST00000427785 PABPN1Q86U42 306 aaKnown RBP eCLIP22.04■■□□□ 1.12
RFC4-206ENST00000427785 CECR2Q9BXF3 1484 aa21.85■■□□□ 1.09
RFC4-206ENST00000427785 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
RFC4-206ENST00000427785 BAZ1AQ9NRL2 1556 aaPredicted RBP21.75■■□□□ 1.07
RFC4-206ENST00000427785 MROH2BQ7Z745 1585 aa21.74■■□□□ 1.07
RFC4-206ENST00000427785 RSF1Q96T23 1441 aaPredicted RBP21.66■■□□□ 1.06
RFC4-206ENST00000427785 SUPT5HO00267 1087 aaKnown RBP21.65■■□□□ 1.06
RFC4-206ENST00000427785 WIZO95785 1651 aa21.61■■□□□ 1.05
RFC4-206ENST00000427785 EIF4G1Q04637 1599 aaKnown RBP21.58■■□□□ 1.05
RFC4-206ENST00000427785 PEG3Q9GZU2 1588 aa21.44■■□□□ 1.02
RFC4-206ENST00000427785 SMARCA2P51531 1590 aa21.38■■□□□ 1.01
RFC4-206ENST00000427785 TOP2AP11388 1531 aaKnown RBP21.35■■□□□ 1.01
RFC4-206ENST00000427785 ATAD2BQ9ULI0 1458 aa21.35■■□□□ 1.01
RFC4-206ENST00000427785 CC2D2AQ9P2K1 1620 aa21.35■■□□□ 1.01
RFC4-206ENST00000427785 BAZ1BQ9UIG0 1483 aaKnown RBP21.26■□□□□ 0.99
RFC4-206ENST00000427785 HMGXB3Q12766 1538 aa21.24■□□□□ 0.99
RFC4-206ENST00000427785 NCAPD3P42695 1498 aa21.16■□□□□ 0.98
RFC4-206ENST00000427785 CCDC88BA6NC98 1476 aa21.04■□□□□ 0.96
RFC4-206ENST00000427785 DNAJC5BQ9UF47 199 aa20.85■□□□□ 0.93
RFC4-206ENST00000427785 PRDM2Q13029 1718 aa20.82■□□□□ 0.92
RFC4-206ENST00000427785 CFTRP13569 1480 aa20.65■□□□□ 0.9
RFC4-206ENST00000427785 ABCC8Q09428 1581 aa20.62■□□□□ 0.89
RFC4-206ENST00000427785 NESP48681 1621 aa20.6■□□□□ 0.89
RFC4-206ENST00000427785 LAMC3Q9Y6N6 1575 aa20.59■□□□□ 0.89
RFC4-206ENST00000427785 CADPSQ9ULU8 1353 aa20.59■□□□□ 0.89
RFC4-206ENST00000427785 CHIC1Q5VXU3 224 aa20.57■□□□□ 0.88
RFC4-206ENST00000427785 KIF21AQ7Z4S6 1674 aa20.5■□□□□ 0.87
RFC4-206ENST00000427785 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
RFC4-206ENST00000427785 FANCD2Q9BXW9 1451 aa20.44■□□□□ 0.86
RFC4-206ENST00000427785 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
RFC4-206ENST00000427785 BIVM-ERCC5R4GMW8 1640 aa20.41■□□□□ 0.86
RFC4-206ENST00000427785 TOP2BQ02880 1626 aa20.37■□□□□ 0.85
RFC4-206ENST00000427785 CEP164Q9UPV0 1460 aa20.37■□□□□ 0.85
RFC4-206ENST00000427785 CUX1P39880 1505 aa20.36■□□□□ 0.85
RFC4-206ENST00000427785 TRIM41Q8WV44 630 aa20.34■□□□□ 0.85
RFC4-206ENST00000427785 PDS5BQ9NTI5 1447 aa20.33■□□□□ 0.84
RFC4-206ENST00000427785 DNMBPQ6XZF7 1577 aa20.28■□□□□ 0.84
RFC4-206ENST00000427785 URB2Q14146 1524 aaKnown RBP20.23■□□□□ 0.83
RFC4-206ENST00000427785 TOPBP1Q92547 1522 aa20.22■□□□□ 0.83
RFC4-206ENST00000427785 ERCC6Q03468 1493 aa20.21■□□□□ 0.83
RFC4-206ENST00000427785 MRC2Q9UBG0 1479 aa20.18■□□□□ 0.82
RFC4-206ENST00000427785 THOC2Q8NI27 1593 aaKnown RBP20.18■□□□□ 0.82
RFC4-206ENST00000427785 FGD5Q6ZNL6 1462 aa20.16■□□□□ 0.82
RFC4-206ENST00000427785 WDR62O43379 1518 aa20.12■□□□□ 0.81
RFC4-206ENST00000427785 WDR97A6NE52 1622 aa20.09■□□□□ 0.81
RFC4-206ENST00000427785 POLA1P09884 1462 aaPredicted RBP20.09■□□□□ 0.81
RFC4-206ENST00000427785 SOGA1O94964 1423 aa20.07■□□□□ 0.8
RFC4-206ENST00000427785 RUSC2Q8N2Y8 1516 aa20.03■□□□□ 0.8
RFC4-206ENST00000427785 FAM9AQ8IZU1 332 aaPredicted RBP20.01■□□□□ 0.79
RFC4-206ENST00000427785 RAD54L2Q9Y4B4 1467 aa20■□□□□ 0.79
RFC4-206ENST00000427785 TARBP1Q13395 1621 aaKnown RBP19.98■□□□□ 0.79
RFC4-206ENST00000427785 EEA1Q15075 1411 aa19.96■□□□□ 0.79
RFC4-206ENST00000427785 CUX2O14529 1486 aa19.95■□□□□ 0.78
RFC4-206ENST00000427785 ABCA10Q8WWZ4 1543 aa19.95■□□□□ 0.78
RFC4-206ENST00000427785 ABCA5Q8WWZ7 1642 aa19.91■□□□□ 0.78
RFC4-206ENST00000427785 KIF27Q86VH2 1401 aa19.9■□□□□ 0.78
RFC4-206ENST00000427785 PBRM1Q86U86 1689 aa19.88■□□□□ 0.77
RFC4-206ENST00000427785 IFT140Q96RY7 1462 aa19.86■□□□□ 0.77
RFC4-206ENST00000427785 KIF21BO75037 1637 aa19.85■□□□□ 0.77
RFC4-206ENST00000427785 EIF4G3O43432 1585 aaKnown RBP19.82■□□□□ 0.76
RFC4-206ENST00000427785 ZNF608Q9ULD9 1512 aaPredicted RBP19.78■□□□□ 0.76
RFC4-206ENST00000427785 CSRNP3Q8WYN3 585 aa19.78■□□□□ 0.76
RFC4-206ENST00000427785 EHMT2Q96KQ7 1210 aa19.77■□□□□ 0.76
RFC4-206ENST00000427785 TDRD9Q8NDG6 1382 aaKnown RBP19.77■□□□□ 0.76
RFC4-206ENST00000427785 CUL7Q14999 1698 aa19.77■□□□□ 0.76
RFC4-206ENST00000427785 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
RFC4-206ENST00000427785 LOC105371045A0A1W2PR82 267 aa19.76■□□□□ 0.75
RFC4-206ENST00000427785 GOLGA3Q08378 1498 aa19.73■□□□□ 0.75
RFC4-206ENST00000427785 ERICH3Q5RHP9 1530 aa19.72■□□□□ 0.75
RFC4-206ENST00000427785 AQRO60306 1485 aaKnown RBP eCLIP19.71■□□□□ 0.755e-8■□□□□ 10.1
RFC4-206ENST00000427785 PRXQ9BXM0 1461 aa19.71■□□□□ 0.75
RFC4-206ENST00000427785 RAPGEF2Q9Y4G8 1499 aa19.71■□□□□ 0.75
RFC4-206ENST00000427785 ADAMTS12P58397 1594 aa19.69■□□□□ 0.74
RFC4-206ENST00000427785 IGF1RP08069 1367 aa19.69■□□□□ 0.74
RFC4-206ENST00000427785 GRIN2BQ13224 1484 aa19.65■□□□□ 0.74
RFC4-206ENST00000427785 CARMIL1Q5VZK9 1371 aa19.61■□□□□ 0.73
RFC4-206ENST00000427785 CTTNBP2Q8WZ74 1663 aa19.61■□□□□ 0.73
RFC4-206ENST00000427785 SNAPC4Q5SXM2 1469 aa19.6■□□□□ 0.73
RFC4-206ENST00000427785 TNIKQ9UKE5 1360 aa19.54■□□□□ 0.72
RFC4-206ENST00000427785 MAGI1Q96QZ7 1491 aaPredicted RBP19.54■□□□□ 0.72
RFC4-206ENST00000427785 FHAD1B1AJZ9 1412 aa19.53■□□□□ 0.72
RFC4-206ENST00000427785 UBTFP17480 764 aaKnown RBP19.53■□□□□ 0.72
RFC4-206ENST00000427785 CHD1O14646 1710 aa19.51■□□□□ 0.71
RFC4-206ENST00000427785 CEP162Q5TB80 1403 aa19.49■□□□□ 0.71
RFC4-206ENST00000427785 SYNJ2O15056 1496 aa19.45■□□□□ 0.7
RFC4-206ENST00000427785 GRIN2AQ12879 1464 aa19.44■□□□□ 0.7
RFC4-206ENST00000427785 CEP170Q5SW79 1584 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms