RNA–Protein interactions for RNA: ENST00000426196.5

HDAC6-206, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 882 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-206ENST00000426196 NISCHQ9Y2I1 1504 aa36.37■■■■□ 3.41
HDAC6-206ENST00000426196 ABCC9O60706 1549 aa33.48■■■□□ 2.95
HDAC6-206ENST00000426196 CCDC180Q9P1Z9 1646 aa32.97■■■□□ 2.87
HDAC6-206ENST00000426196 DNAJC5BQ9UF47 199 aa31.86■■■□□ 2.69
HDAC6-206ENST00000426196 RB1CC1Q8TDY2 1594 aa31.66■■■□□ 2.66
HDAC6-206ENST00000426196 NACADO15069 1562 aa31.29■■■□□ 2.6
HDAC6-206ENST00000426196 PABPN1Q86U42 306 aaKnown RBP eCLIP31.04■■■□□ 2.56
HDAC6-206ENST00000426196 UNC13AQ9UPW8 1703 aa30.95■■■□□ 2.55
HDAC6-206ENST00000426196 DCAF8L2P0C7V8 631 aa30.94■■■□□ 2.54
HDAC6-206ENST00000426196 BICRAQ9NZM4 1560 aa30.7■■■□□ 2.5
HDAC6-206ENST00000426196 MYO15BQ96JP2 1530 aa30.64■■■□□ 2.5
HDAC6-206ENST00000426196 SHROOM4Q9ULL8 1493 aa30.3■■■□□ 2.44
HDAC6-206ENST00000426196 CC2D2AQ9P2K1 1620 aa30.25■■■□□ 2.43
HDAC6-206ENST00000426196 CECR2Q9BXF3 1484 aa30.25■■■□□ 2.43
HDAC6-206ENST00000426196 EIF4G1Q04637 1599 aaKnown RBP30.03■■■□□ 2.4
HDAC6-206ENST00000426196 DCAF1Q9Y4B6 1507 aa30.02■■■□□ 2.4
HDAC6-206ENST00000426196 ZCCHC6Q5VYS8 1495 aaKnown RBP30.02■■■□□ 2.4
HDAC6-206ENST00000426196 SCRIBQ14160 1630 aa29.97■■■□□ 2.39
HDAC6-206ENST00000426196 DNAJC5Q9H3Z4 198 aa29.75■■■□□ 2.35
HDAC6-206ENST00000426196 CUX2O14529 1486 aa29.15■■■□□ 2.26
HDAC6-206ENST00000426196 ERCC6Q03468 1493 aa29.01■■■□□ 2.23
HDAC6-206ENST00000426196 NCAPD3P42695 1498 aa28.85■■■□□ 2.21
HDAC6-206ENST00000426196 ATAD2BQ9ULI0 1458 aa28.68■■■□□ 2.18
HDAC6-206ENST00000426196 HMGXB3Q12766 1538 aa28.62■■■□□ 2.17
HDAC6-206ENST00000426196 SMARCA2P51531 1590 aa28.62■■■□□ 2.17
HDAC6-206ENST00000426196 NESP48681 1621 aa28.58■■■□□ 2.17
HDAC6-206ENST00000426196 SMARCA4P51532 1647 aa28.53■■■□□ 2.16
HDAC6-206ENST00000426196 THOC2Q8NI27 1593 aaKnown RBP28.45■■■□□ 2.15
HDAC6-206ENST00000426196 BAZ1BQ9UIG0 1483 aaKnown RBP28.4■■■□□ 2.14
HDAC6-206ENST00000426196 LAMC3Q9Y6N6 1575 aa28.34■■■□□ 2.13
HDAC6-206ENST00000426196 BAZ1AQ9NRL2 1556 aaPredicted RBP28.31■■■□□ 2.12
HDAC6-206ENST00000426196 KIF21AQ7Z4S6 1674 aa28.26■■■□□ 2.11
HDAC6-206ENST00000426196 PEG3Q9GZU2 1588 aa28.24■■■□□ 2.11
HDAC6-206ENST00000426196 TRIM41Q8WV44 630 aa28.23■■■□□ 2.11
HDAC6-206ENST00000426196 PDS5BQ9NTI5 1447 aa28.19■■■□□ 2.1
HDAC6-206ENST00000426196 MROH2BQ7Z745 1585 aa28■■■□□ 2.07
HDAC6-206ENST00000426196 MRC2Q9UBG0 1479 aa27.97■■■□□ 2.07
HDAC6-206ENST00000426196 CADPSQ9ULU8 1353 aa27.94■■■□□ 2.06
HDAC6-206ENST00000426196 WDR62O43379 1518 aa27.92■■■□□ 2.06
HDAC6-206ENST00000426196 CEP164Q9UPV0 1460 aa27.76■■■□□ 2.04
HDAC6-206ENST00000426196 OSCARQ8IYS5 282 aa27.68■■■□□ 2.02
HDAC6-206ENST00000426196 WIZO95785 1651 aa27.66■■■□□ 2.02
HDAC6-206ENST00000426196 FANCD2Q9BXW9 1451 aa27.65■■■□□ 2.02
HDAC6-206ENST00000426196 CFTRP13569 1480 aa27.51■■□□□ 1.99
HDAC6-206ENST00000426196 URB2Q14146 1524 aaKnown RBP27.44■■□□□ 1.98
HDAC6-206ENST00000426196 RIMBP3CA6NJZ7 1639 aa27.42■■□□□ 1.98
HDAC6-206ENST00000426196 RIMBP3BA6NNM3 1639 aa27.42■■□□□ 1.98
HDAC6-206ENST00000426196 RIMBP3Q9UFD9 1639 aa27.42■■□□□ 1.98
HDAC6-206ENST00000426196 PRDM2Q13029 1718 aa27.29■■□□□ 1.96
HDAC6-206ENST00000426196 TOP2AP11388 1531 aaKnown RBP27.28■■□□□ 1.96
HDAC6-206ENST00000426196 ARHGEF11O15085 1522 aa27.26■■□□□ 1.95
HDAC6-206ENST00000426196 IFT140Q96RY7 1462 aa27.21■■□□□ 1.95
HDAC6-206ENST00000426196 RSF1Q96T23 1441 aaPredicted RBP27.19■■□□□ 1.94
HDAC6-206ENST00000426196 ZNF608Q9ULD9 1512 aaPredicted RBP27.19■■□□□ 1.94
HDAC6-206ENST00000426196 CYB5RLQ6IPT4 315 aa27.07■■□□□ 1.92
HDAC6-206ENST00000426196 EIF4G3O43432 1585 aaKnown RBP27.06■■□□□ 1.92
HDAC6-206ENST00000426196 TOPBP1Q92547 1522 aa27.06■■□□□ 1.92
HDAC6-206ENST00000426196 CHD1O14646 1710 aa27■■□□□ 1.91
HDAC6-206ENST00000426196 TRHP20396 242 aaPredicted RBP26.99■■□□□ 1.91
HDAC6-206ENST00000426196 ABCC8Q09428 1581 aa26.99■■□□□ 1.91
HDAC6-206ENST00000426196 CCDC88BA6NC98 1476 aa26.94■■□□□ 1.9
HDAC6-206ENST00000426196 ARAP1Q96P48 1450 aa26.93■■□□□ 1.9
HDAC6-206ENST00000426196 DNMBPQ6XZF7 1577 aa26.92■■□□□ 1.9
HDAC6-206ENST00000426196 AQRO60306 1485 aaKnown RBP eCLIP26.87■■□□□ 1.891e-14■■■■■ 33.6
HDAC6-206ENST00000426196 TARBP1Q13395 1621 aaKnown RBP26.87■■□□□ 1.89
HDAC6-206ENST00000426196 FBLN2P98095 1184 aa26.84■■□□□ 1.89
HDAC6-206ENST00000426196 POLA1P09884 1462 aaPredicted RBP26.74■■□□□ 1.87
HDAC6-206ENST00000426196 AEBP2Q6ZN18 517 aaPredicted RBP26.68■■□□□ 1.86
HDAC6-206ENST00000426196 CLASP1Q7Z460 1538 aa26.63■■□□□ 1.85
HDAC6-206ENST00000426196 RAD54L2Q9Y4B4 1467 aa26.62■■□□□ 1.85
HDAC6-206ENST00000426196 SNAPC4Q5SXM2 1469 aa26.61■■□□□ 1.85
HDAC6-206ENST00000426196 WDR97A6NE52 1622 aa26.61■■□□□ 1.85
HDAC6-206ENST00000426196 TDRD9Q8NDG6 1382 aaKnown RBP26.6■■□□□ 1.85
HDAC6-206ENST00000426196 SYNJ1O43426 1573 aa26.6■■□□□ 1.85
HDAC6-206ENST00000426196 SOGA1O94964 1423 aa26.59■■□□□ 1.85
HDAC6-206ENST00000426196 CHMP7Q8WUX9 453 aaPredicted RBP26.55■■□□□ 1.84
HDAC6-206ENST00000426196 MAGI1Q96QZ7 1491 aaPredicted RBP26.54■■□□□ 1.84
HDAC6-206ENST00000426196 FGD5Q6ZNL6 1462 aa26.49■■□□□ 1.83
HDAC6-206ENST00000426196 GRIN2BQ13224 1484 aa26.46■■□□□ 1.83
HDAC6-206ENST00000426196 SYNJ2O15056 1496 aa26.44■■□□□ 1.82
HDAC6-206ENST00000426196 GAPVD1Q14C86 1478 aa26.39■■□□□ 1.82
HDAC6-206ENST00000426196 CUX1P39880 1505 aa26.36■■□□□ 1.81
HDAC6-206ENST00000426196 PBRM1Q86U86 1689 aa26.36■■□□□ 1.81
HDAC6-206ENST00000426196 ABCA5Q8WWZ7 1642 aa26.19■■□□□ 1.78
HDAC6-206ENST00000426196 ABCA10Q8WWZ4 1543 aa26.15■■□□□ 1.78
HDAC6-206ENST00000426196 ERCC6L2Q5T890 1561 aa26.14■■□□□ 1.78
HDAC6-206ENST00000426196 GRIN2AQ12879 1464 aa26.11■■□□□ 1.77
HDAC6-206ENST00000426196 CEP170Q5SW79 1584 aa26.08■■□□□ 1.77
HDAC6-206ENST00000426196 ADAMTS12P58397 1594 aa26.04■■□□□ 1.76
HDAC6-206ENST00000426196 NUP160Q12769 1436 aa26.04■■□□□ 1.76
HDAC6-206ENST00000426196 KIF13AQ9H1H9 1805 aa26.03■■□□□ 1.76
HDAC6-206ENST00000426196 SHROOM2Q13796 1616 aa26.01■■□□□ 1.75
HDAC6-206ENST00000426196 WRNQ14191 1432 aaPredicted RBP eCLIP25.94■■□□□ 1.74
HDAC6-206ENST00000426196 FHAD1B1AJZ9 1412 aa25.92■■□□□ 1.74
HDAC6-206ENST00000426196 ERICH3Q5RHP9 1530 aa25.83■■□□□ 1.73
HDAC6-206ENST00000426196 PRG4Q92954 1404 aaPredicted RBP25.83■■□□□ 1.73
HDAC6-206ENST00000426196 BIVM-ERCC5R4GMW8 1640 aa25.81■■□□□ 1.72
HDAC6-206ENST00000426196 TOP2BQ02880 1626 aa25.8■■□□□ 1.72
HDAC6-206ENST00000426196 FAM69CQ0P6D2 419 aa25.78■■□□□ 1.72
HDAC6-206ENST00000426196 ABCC10Q5T3U5 1492 aa25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms