RNA–Protein interactions for RNA: ENST00000425056.5

GPC1-203, Transcript of glypican 1, humanhuman

TSL 5

Gene GPC1, Length 1,085 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-203ENST00000425056 NISCHQ9Y2I1 1504 aa44.49■■■■■ 4.71
GPC1-203ENST00000425056 CCDC180Q9P1Z9 1646 aa39.94■■■■□ 3.99
GPC1-203ENST00000425056 ABCC9O60706 1549 aa39.66■■■■□ 3.94
GPC1-203ENST00000425056 RB1CC1Q8TDY2 1594 aa37.89■■■■□ 3.66
GPC1-203ENST00000425056 NACADO15069 1562 aa37.68■■■■□ 3.62
GPC1-203ENST00000425056 DCAF8L2P0C7V8 631 aa37.28■■■■□ 3.56
GPC1-203ENST00000425056 MYO15BQ96JP2 1530 aa37.25■■■■□ 3.55
GPC1-203ENST00000425056 UNC13AQ9UPW8 1703 aa37.08■■■■□ 3.53
GPC1-203ENST00000425056 DNAJC5BQ9UF47 199 aa37.02■■■■□ 3.52
GPC1-203ENST00000425056 ZCCHC6Q5VYS8 1495 aaKnown RBP36.94■■■■□ 3.5
GPC1-203ENST00000425056 PABPN1Q86U42 306 aaKnown RBP eCLIP36.87■■■■□ 3.49
GPC1-203ENST00000425056 DCAF1Q9Y4B6 1507 aa36.81■■■■□ 3.48
GPC1-203ENST00000425056 BICRAQ9NZM4 1560 aa36.79■■■■□ 3.48
GPC1-203ENST00000425056 SHROOM4Q9ULL8 1493 aa36.37■■■■□ 3.41
GPC1-203ENST00000425056 SCRIBQ14160 1630 aa36.32■■■■□ 3.4
GPC1-203ENST00000425056 CC2D2AQ9P2K1 1620 aa35.89■■■■□ 3.34
GPC1-203ENST00000425056 EIF4G1Q04637 1599 aaKnown RBP35.87■■■■□ 3.33
GPC1-203ENST00000425056 CECR2Q9BXF3 1484 aa35.73■■■■□ 3.31
GPC1-203ENST00000425056 NCAPD3P42695 1498 aa34.75■■■■□ 3.15
GPC1-203ENST00000425056 SMARCA4P51532 1647 aa34.7■■■■□ 3.15
GPC1-203ENST00000425056 ATAD2BQ9ULI0 1458 aa34.66■■■■□ 3.14
GPC1-203ENST00000425056 SMARCA2P51531 1590 aa34.61■■■■□ 3.13
GPC1-203ENST00000425056 HMGXB3Q12766 1538 aa34.56■■■■□ 3.12
GPC1-203ENST00000425056 BAZ1AQ9NRL2 1556 aaPredicted RBP34.54■■■■□ 3.12
GPC1-203ENST00000425056 PEG3Q9GZU2 1588 aa34.4■■■■□ 3.1
GPC1-203ENST00000425056 BAZ1BQ9UIG0 1483 aaKnown RBP34.33■■■■□ 3.09
GPC1-203ENST00000425056 MROH2BQ7Z745 1585 aa34.27■■■■□ 3.08
GPC1-203ENST00000425056 ERCC6Q03468 1493 aa34.24■■■■□ 3.07
GPC1-203ENST00000425056 CUX2O14529 1486 aa34.2■■■■□ 3.06
GPC1-203ENST00000425056 NESP48681 1621 aa34.12■■■■□ 3.05
GPC1-203ENST00000425056 LAMC3Q9Y6N6 1575 aa33.98■■■■□ 3.03
GPC1-203ENST00000425056 DNAJC5Q9H3Z4 198 aa33.91■■■■□ 3.02
GPC1-203ENST00000425056 WIZO95785 1651 aa33.87■■■■□ 3.01
GPC1-203ENST00000425056 THOC2Q8NI27 1593 aaKnown RBP33.84■■■■□ 3.01
GPC1-203ENST00000425056 KIF21AQ7Z4S6 1674 aa33.76■■■□□ 2.99
GPC1-203ENST00000425056 PDS5BQ9NTI5 1447 aa33.72■■■□□ 2.99
GPC1-203ENST00000425056 CADPSQ9ULU8 1353 aa33.67■■■□□ 2.98
GPC1-203ENST00000425056 RSF1Q96T23 1441 aaPredicted RBP33.6■■■□□ 2.97
GPC1-203ENST00000425056 TOP2AP11388 1531 aaKnown RBP33.48■■■□□ 2.95
GPC1-203ENST00000425056 MRC2Q9UBG0 1479 aa33.45■■■□□ 2.95
GPC1-203ENST00000425056 WDR62O43379 1518 aa33.4■■■□□ 2.94
GPC1-203ENST00000425056 CFTRP13569 1480 aa33.36■■■□□ 2.93
GPC1-203ENST00000425056 CEP164Q9UPV0 1460 aa33.35■■■□□ 2.93
GPC1-203ENST00000425056 FANCD2Q9BXW9 1451 aa33.31■■■□□ 2.92
GPC1-203ENST00000425056 PRDM2Q13029 1718 aa33.13■■■□□ 2.89
GPC1-203ENST00000425056 URB2Q14146 1524 aaKnown RBP33.04■■■□□ 2.88
GPC1-203ENST00000425056 CCDC88BA6NC98 1476 aa33.04■■■□□ 2.88
GPC1-203ENST00000425056 TOPBP1Q92547 1522 aa32.71■■■□□ 2.83
GPC1-203ENST00000425056 IFT140Q96RY7 1462 aa32.67■■■□□ 2.82
GPC1-203ENST00000425056 ABCC8Q09428 1581 aa32.65■■■□□ 2.82
GPC1-203ENST00000425056 DNMBPQ6XZF7 1577 aa32.62■■■□□ 2.81
GPC1-203ENST00000425056 ZNF608Q9ULD9 1512 aaPredicted RBP32.58■■■□□ 2.81
GPC1-203ENST00000425056 OSCARQ8IYS5 282 aa32.54■■■□□ 2.8
GPC1-203ENST00000425056 EIF4G3O43432 1585 aaKnown RBP32.48■■■□□ 2.79
GPC1-203ENST00000425056 TARBP1Q13395 1621 aaKnown RBP32.44■■■□□ 2.78
GPC1-203ENST00000425056 TRIM41Q8WV44 630 aa32.42■■■□□ 2.78
GPC1-203ENST00000425056 POLA1P09884 1462 aaPredicted RBP32.38■■■□□ 2.77
GPC1-203ENST00000425056 AQRO60306 1485 aaKnown RBP eCLIP32.27■■■□□ 2.76
GPC1-203ENST00000425056 RAD54L2Q9Y4B4 1467 aa32.22■■■□□ 2.75
GPC1-203ENST00000425056 RIMBP3CA6NJZ7 1639 aa32.21■■■□□ 2.75
GPC1-203ENST00000425056 RIMBP3BA6NNM3 1639 aa32.21■■■□□ 2.75
GPC1-203ENST00000425056 RIMBP3Q9UFD9 1639 aa32.21■■■□□ 2.75
GPC1-203ENST00000425056 CUX1P39880 1505 aa32.2■■■□□ 2.74
GPC1-203ENST00000425056 CHD1O14646 1710 aa32.2■■■□□ 2.74
GPC1-203ENST00000425056 FGD5Q6ZNL6 1462 aa32.19■■■□□ 2.74
GPC1-203ENST00000425056 SOGA1O94964 1423 aa32.18■■■□□ 2.74
GPC1-203ENST00000425056 WDR97A6NE52 1622 aa32.17■■■□□ 2.74
GPC1-203ENST00000425056 ARHGEF11O15085 1522 aa32.12■■■□□ 2.73
GPC1-203ENST00000425056 TDRD9Q8NDG6 1382 aaKnown RBP32.08■■■□□ 2.73
GPC1-203ENST00000425056 SUPT5HO00267 1087 aaKnown RBP32.08■■■□□ 2.73
GPC1-203ENST00000425056 SNAPC4Q5SXM2 1469 aa32■■■□□ 2.71
GPC1-203ENST00000425056 FBLN2P98095 1184 aa31.95■■■□□ 2.71
GPC1-203ENST00000425056 MAGI1Q96QZ7 1491 aaPredicted RBP31.95■■■□□ 2.7
GPC1-203ENST00000425056 GRIN2BQ13224 1484 aa31.93■■■□□ 2.7
GPC1-203ENST00000425056 PBRM1Q86U86 1689 aa31.87■■■□□ 2.69
GPC1-203ENST00000425056 ABCA10Q8WWZ4 1543 aa31.86■■■□□ 2.69
GPC1-203ENST00000425056 CLASP1Q7Z460 1538 aa31.85■■■□□ 2.69
GPC1-203ENST00000425056 ABCA5Q8WWZ7 1642 aa31.83■■■□□ 2.69
GPC1-203ENST00000425056 GAPVD1Q14C86 1478 aa31.83■■■□□ 2.69
GPC1-203ENST00000425056 SYNJ2O15056 1496 aa31.82■■■□□ 2.68
GPC1-203ENST00000425056 SYNJ1O43426 1573 aa31.81■■■□□ 2.68
GPC1-203ENST00000425056 ARAP1Q96P48 1450 aa31.81■■■□□ 2.68
GPC1-203ENST00000425056 CHMP7Q8WUX9 453 aaPredicted RBP31.77■■■□□ 2.68
GPC1-203ENST00000425056 BIVM-ERCC5R4GMW8 1640 aa31.77■■■□□ 2.68
GPC1-203ENST00000425056 TOP2BQ02880 1626 aa31.75■■■□□ 2.67
GPC1-203ENST00000425056 CYB5RLQ6IPT4 315 aa31.74■■■□□ 2.67
GPC1-203ENST00000425056 WRNQ14191 1432 aaPredicted RBP eCLIP31.72■■■□□ 2.67
GPC1-203ENST00000425056 ADAMTS12P58397 1594 aa31.58■■■□□ 2.65
GPC1-203ENST00000425056 GRIN2AQ12879 1464 aa31.53■■■□□ 2.64
GPC1-203ENST00000425056 ERICH3Q5RHP9 1530 aa31.48■■■□□ 2.63
GPC1-203ENST00000425056 FHAD1B1AJZ9 1412 aa31.44■■■□□ 2.62
GPC1-203ENST00000425056 NUP160Q12769 1436 aa31.44■■■□□ 2.62
GPC1-203ENST00000425056 CEP170Q5SW79 1584 aa31.43■■■□□ 2.62
GPC1-203ENST00000425056 TRHP20396 242 aaPredicted RBP31.32■■■□□ 2.6
GPC1-203ENST00000425056 SHROOM2Q13796 1616 aa31.31■■■□□ 2.6
GPC1-203ENST00000425056 ERCC6L2Q5T890 1561 aa31.3■■■□□ 2.6
GPC1-203ENST00000425056 RUSC2Q8N2Y8 1516 aa31.14■■■□□ 2.57
GPC1-203ENST00000425056 KIF27Q86VH2 1401 aa31.07■■■□□ 2.57
GPC1-203ENST00000425056 CUL7Q14999 1698 aa31.06■■■□□ 2.56
GPC1-203ENST00000425056 PRG4Q92954 1404 aaPredicted RBP31.06■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms