RNA–Protein interactions for RNA: ENST00000420813.5

MSH6-203, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 491 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-203ENST00000420813 NISCHQ9Y2I1 1504 aa43.46■■■■■ 4.55
MSH6-203ENST00000420813 CCDC180Q9P1Z9 1646 aa39.05■■■■□ 3.84
MSH6-203ENST00000420813 ABCC9O60706 1549 aa38.74■■■■□ 3.79
MSH6-203ENST00000420813 RB1CC1Q8TDY2 1594 aa37.04■■■■□ 3.52
MSH6-203ENST00000420813 NACADO15069 1562 aa36.83■■■■□ 3.49
MSH6-203ENST00000420813 DCAF8L2P0C7V8 631 aa36.46■■■■□ 3.43
MSH6-203ENST00000420813 MYO15BQ96JP2 1530 aa36.41■■■■□ 3.42
MSH6-203ENST00000420813 UNC13AQ9UPW8 1703 aa36.26■■■■□ 3.4
MSH6-203ENST00000420813 DNAJC5BQ9UF47 199 aa36.16■■■■□ 3.38
MSH6-203ENST00000420813 ZCCHC6Q5VYS8 1495 aaKnown RBP36.06■■■■□ 3.36
MSH6-203ENST00000420813 PABPN1Q86U42 306 aaKnown RBP eCLIP36.02■■■■□ 3.36
MSH6-203ENST00000420813 DCAF1Q9Y4B6 1507 aa35.98■■■■□ 3.35
MSH6-203ENST00000420813 BICRAQ9NZM4 1560 aa35.93■■■■□ 3.34
MSH6-203ENST00000420813 SHROOM4Q9ULL8 1493 aa35.55■■■■□ 3.28
MSH6-203ENST00000420813 SCRIBQ14160 1630 aa35.46■■■■□ 3.27
MSH6-203ENST00000420813 CC2D2AQ9P2K1 1620 aa35.07■■■■□ 3.21
MSH6-203ENST00000420813 EIF4G1Q04637 1599 aaKnown RBP35.04■■■■□ 3.2
MSH6-203ENST00000420813 CECR2Q9BXF3 1484 aa34.91■■■■□ 3.18
MSH6-203ENST00000420813 NCAPD3P42695 1498 aa33.96■■■■□ 3.03
MSH6-203ENST00000420813 SMARCA4P51532 1647 aa33.9■■■■□ 3.02
MSH6-203ENST00000420813 ATAD2BQ9ULI0 1458 aa33.86■■■■□ 3.01
MSH6-203ENST00000420813 SMARCA2P51531 1590 aa33.82■■■■□ 3
MSH6-203ENST00000420813 HMGXB3Q12766 1538 aa33.77■■■■□ 3
MSH6-203ENST00000420813 BAZ1AQ9NRL2 1556 aaPredicted RBP33.76■■■□□ 2.99
MSH6-203ENST00000420813 PEG3Q9GZU2 1588 aa33.61■■■□□ 2.97
MSH6-203ENST00000420813 BAZ1BQ9UIG0 1483 aaKnown RBP33.54■■■□□ 2.96
MSH6-203ENST00000420813 ERCC6Q03468 1493 aa33.46■■■□□ 2.95
MSH6-203ENST00000420813 MROH2BQ7Z745 1585 aa33.46■■■□□ 2.95
MSH6-203ENST00000420813 CUX2O14529 1486 aa33.42■■■□□ 2.94
MSH6-203ENST00000420813 NESP48681 1621 aa33.32■■■□□ 2.92
MSH6-203ENST00000420813 LAMC3Q9Y6N6 1575 aa33.21■■■□□ 2.91
MSH6-203ENST00000420813 DNAJC5Q9H3Z4 198 aa33.16■■■□□ 2.9
MSH6-203ENST00000420813 WIZO95785 1651 aa33.09■■■□□ 2.89
MSH6-203ENST00000420813 THOC2Q8NI27 1593 aaKnown RBP33.04■■■□□ 2.88
MSH6-203ENST00000420813 KIF21AQ7Z4S6 1674 aa32.99■■■□□ 2.87
MSH6-203ENST00000420813 PDS5BQ9NTI5 1447 aa32.97■■■□□ 2.87
MSH6-203ENST00000420813 CADPSQ9ULU8 1353 aa32.91■■■□□ 2.86
MSH6-203ENST00000420813 RSF1Q96T23 1441 aaPredicted RBP32.81■■■□□ 2.84
MSH6-203ENST00000420813 TOP2AP11388 1531 aaKnown RBP32.71■■■□□ 2.83
MSH6-203ENST00000420813 MRC2Q9UBG0 1479 aa32.67■■■□□ 2.82
MSH6-203ENST00000420813 WDR62O43379 1518 aa32.62■■■□□ 2.81
MSH6-203ENST00000420813 CFTRP13569 1480 aa32.59■■■□□ 2.81
MSH6-203ENST00000420813 CEP164Q9UPV0 1460 aa32.58■■■□□ 2.81
MSH6-203ENST00000420813 FANCD2Q9BXW9 1451 aa32.54■■■□□ 2.8
MSH6-203ENST00000420813 PRDM2Q13029 1718 aa32.41■■■□□ 2.78
MSH6-203ENST00000420813 CCDC88BA6NC98 1476 aa32.28■■■□□ 2.76
MSH6-203ENST00000420813 URB2Q14146 1524 aaKnown RBP32.26■■■□□ 2.76
MSH6-203ENST00000420813 TOPBP1Q92547 1522 aa31.95■■■□□ 2.7
MSH6-203ENST00000420813 ABCC8Q09428 1581 aa31.94■■■□□ 2.7
MSH6-203ENST00000420813 IFT140Q96RY7 1462 aa31.93■■■□□ 2.7
MSH6-203ENST00000420813 DNMBPQ6XZF7 1577 aa31.88■■■□□ 2.69
MSH6-203ENST00000420813 OSCARQ8IYS5 282 aa31.84■■■□□ 2.69
MSH6-203ENST00000420813 ZNF608Q9ULD9 1512 aaPredicted RBP31.81■■■□□ 2.68
MSH6-203ENST00000420813 EIF4G3O43432 1585 aaKnown RBP31.72■■■□□ 2.67
MSH6-203ENST00000420813 TARBP1Q13395 1621 aaKnown RBP31.69■■■□□ 2.66
MSH6-203ENST00000420813 TRIM41Q8WV44 630 aa31.69■■■□□ 2.66
MSH6-203ENST00000420813 POLA1P09884 1462 aaPredicted RBP31.63■■■□□ 2.65
MSH6-203ENST00000420813 AQRO60306 1485 aaKnown RBP eCLIP31.52■■■□□ 2.64
MSH6-203ENST00000420813 CHD1O14646 1710 aa31.48■■■□□ 2.63
MSH6-203ENST00000420813 RIMBP3CA6NJZ7 1639 aa31.48■■■□□ 2.63
MSH6-203ENST00000420813 RIMBP3BA6NNM3 1639 aa31.48■■■□□ 2.63
MSH6-203ENST00000420813 RIMBP3Q9UFD9 1639 aa31.48■■■□□ 2.63
MSH6-203ENST00000420813 SOGA1O94964 1423 aa31.46■■■□□ 2.63
MSH6-203ENST00000420813 RAD54L2Q9Y4B4 1467 aa31.46■■■□□ 2.63
MSH6-203ENST00000420813 WDR97A6NE52 1622 aa31.45■■■□□ 2.62
MSH6-203ENST00000420813 FGD5Q6ZNL6 1462 aa31.44■■■□□ 2.62
MSH6-203ENST00000420813 CUX1P39880 1505 aa31.44■■■□□ 2.62
MSH6-203ENST00000420813 ARHGEF11O15085 1522 aa31.37■■■□□ 2.61
MSH6-203ENST00000420813 SUPT5HO00267 1087 aaKnown RBP31.35■■■□□ 2.61
MSH6-203ENST00000420813 TDRD9Q8NDG6 1382 aaKnown RBP31.34■■■□□ 2.61
MSH6-203ENST00000420813 SNAPC4Q5SXM2 1469 aa31.25■■■□□ 2.59
MSH6-203ENST00000420813 FBLN2P98095 1184 aa31.24■■■□□ 2.59
MSH6-203ENST00000420813 MAGI1Q96QZ7 1491 aaPredicted RBP31.22■■■□□ 2.59
MSH6-203ENST00000420813 GRIN2BQ13224 1484 aa31.21■■■□□ 2.59
MSH6-203ENST00000420813 PBRM1Q86U86 1689 aa31.16■■■□□ 2.58
MSH6-203ENST00000420813 ABCA10Q8WWZ4 1543 aa31.13■■■□□ 2.57
MSH6-203ENST00000420813 SYNJ1O43426 1573 aa31.1■■■□□ 2.57
MSH6-203ENST00000420813 GAPVD1Q14C86 1478 aa31.1■■■□□ 2.57
MSH6-203ENST00000420813 ABCA5Q8WWZ7 1642 aa31.09■■■□□ 2.57
MSH6-203ENST00000420813 CLASP1Q7Z460 1538 aa31.09■■■□□ 2.57
MSH6-203ENST00000420813 SYNJ2O15056 1496 aa31.09■■■□□ 2.57
MSH6-203ENST00000420813 CHMP7Q8WUX9 453 aaPredicted RBP31.08■■■□□ 2.57
MSH6-203ENST00000420813 ARAP1Q96P48 1450 aa31.06■■■□□ 2.56
MSH6-203ENST00000420813 BIVM-ERCC5R4GMW8 1640 aa31.05■■■□□ 2.56
MSH6-203ENST00000420813 CYB5RLQ6IPT4 315 aa31.04■■■□□ 2.56
MSH6-203ENST00000420813 TOP2BQ02880 1626 aa31.02■■■□□ 2.56
MSH6-203ENST00000420813 WRNQ14191 1432 aaPredicted RBP eCLIP30.99■■■□□ 2.55
MSH6-203ENST00000420813 ADAMTS12P58397 1594 aa30.83■■■□□ 2.53
MSH6-203ENST00000420813 GRIN2AQ12879 1464 aa30.81■■■□□ 2.52
MSH6-203ENST00000420813 ERICH3Q5RHP9 1530 aa30.76■■■□□ 2.51
MSH6-203ENST00000420813 FHAD1B1AJZ9 1412 aa30.73■■■□□ 2.51
MSH6-203ENST00000420813 NUP160Q12769 1436 aa30.71■■■□□ 2.51
MSH6-203ENST00000420813 CEP170Q5SW79 1584 aa30.69■■■□□ 2.5
MSH6-203ENST00000420813 TRHP20396 242 aaPredicted RBP30.65■■■□□ 2.5
MSH6-203ENST00000420813 SHROOM2Q13796 1616 aa30.6■■■□□ 2.49
MSH6-203ENST00000420813 ERCC6L2Q5T890 1561 aa30.56■■■□□ 2.48
MSH6-203ENST00000420813 RUSC2Q8N2Y8 1516 aa30.4■■■□□ 2.46
MSH6-203ENST00000420813 KIF27Q86VH2 1401 aa30.38■■■□□ 2.45
MSH6-203ENST00000420813 CUL7Q14999 1698 aa30.36■■■□□ 2.45
MSH6-203ENST00000420813 PRG4Q92954 1404 aaPredicted RBP30.35■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms