RNA–Protein interactions for RNA: ENST00000417352.5

COPS3-202, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 1,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-202ENST00000417352 AEBP2Q6ZN18 517 aaPredicted RBP20.69■□□□□ 0.9
COPS3-202ENST00000417352 CHIC1Q5VXU3 224 aa19.56■□□□□ 0.72
COPS3-202ENST00000417352 SENP3Q9H4L4 574 aaPredicted RBP17.68■□□□□ 0.42
COPS3-202ENST00000417352 PHF23Q9BUL5 403 aaPredicted RBP17.44■□□□□ 0.38
COPS3-202ENST00000417352 NISCHQ9Y2I1 1504 aa17.13■□□□□ 0.33
COPS3-202ENST00000417352 FOXD1Q16676 465 aa16.49■□□□□ 0.23
COPS3-202ENST00000417352 PLPPR3Q6T4P5 718 aa15.6■□□□□ 0.09
COPS3-202ENST00000417352 ABCC9O60706 1549 aa15.48■□□□□ 0.07
COPS3-202ENST00000417352 MSH5O43196 834 aa15.46■□□□□ 0.07
COPS3-202ENST00000417352 PIAS4Q8N2W9 510 aaPredicted RBP15.39■□□□□ 0.05
COPS3-202ENST00000417352 PPP6R1Q9UPN7 881 aa15.35■□□□□ 0.05
COPS3-202ENST00000417352 CCDC180Q9P1Z9 1646 aa15.33■□□□□ 0.04
COPS3-202ENST00000417352 ADRA2BP18089 450 aa15.3■□□□□ 0.04
COPS3-202ENST00000417352 POTEDQ86YR6 584 aa15.25■□□□□ 0.03
COPS3-202ENST00000417352 DCAF8L2P0C7V8 631 aa14.78□□□□□ -0.04
COPS3-202ENST00000417352 RB1CC1Q8TDY2 1594 aa14.66□□□□□ -0.06
COPS3-202ENST00000417352 NACADO15069 1562 aa14.52□□□□□ -0.08
COPS3-202ENST00000417352 DNAJC5BQ9UF47 199 aa14.49□□□□□ -0.09
COPS3-202ENST00000417352 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
COPS3-202ENST00000417352 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
COPS3-202ENST00000417352 MYO15BQ96JP2 1530 aa14.21□□□□□ -0.13
COPS3-202ENST00000417352 BICRAQ9NZM4 1560 aa14.17□□□□□ -0.14
COPS3-202ENST00000417352 ZCCHC6Q5VYS8 1495 aaKnown RBP14.15□□□□□ -0.14
COPS3-202ENST00000417352 SCRIBQ14160 1630 aa14.1□□□□□ -0.15
COPS3-202ENST00000417352 MAPK8IP2Q13387 824 aaPredicted RBP14.08□□□□□ -0.16
COPS3-202ENST00000417352 DCAF1Q9Y4B6 1507 aa14.05□□□□□ -0.16
COPS3-202ENST00000417352 SCAF1Q9H7N4 1312 aaKnown RBP14□□□□□ -0.17
COPS3-202ENST00000417352 DMRT2Q9Y5R5 561 aa13.99□□□□□ -0.17
COPS3-202ENST00000417352 CC2D2AQ9P2K1 1620 aa13.93□□□□□ -0.18
COPS3-202ENST00000417352 CECR2Q9BXF3 1484 aa13.91□□□□□ -0.18
COPS3-202ENST00000417352 SHROOM4Q9ULL8 1493 aa13.9□□□□□ -0.18
COPS3-202ENST00000417352 EIF4G1Q04637 1599 aaKnown RBP13.87□□□□□ -0.19
COPS3-202ENST00000417352 PPP4R3CPQ6ZMV5 832 aa13.66□□□□□ -0.22
COPS3-202ENST00000417352 DCAF8L1A6NGE4 600 aa13.46□□□□□ -0.25
COPS3-202ENST00000417352 HOXD11P31277 338 aaPredicted RBP13.44□□□□□ -0.26
COPS3-202ENST00000417352 CNKSR2Q8WXI2 1034 aa13.42□□□□□ -0.26
COPS3-202ENST00000417352 ERCC6Q03468 1493 aa13.41□□□□□ -0.26
COPS3-202ENST00000417352 NCAPD3P42695 1498 aa13.39□□□□□ -0.27
COPS3-202ENST00000417352 ATAD2BQ9ULI0 1458 aa13.38□□□□□ -0.27
COPS3-202ENST00000417352 SMARCA4P51532 1647 aa13.37□□□□□ -0.27
COPS3-202ENST00000417352 SMARCA2P51531 1590 aa13.36□□□□□ -0.27
COPS3-202ENST00000417352 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
COPS3-202ENST00000417352 RNF216Q9NWF9 866 aaPredicted RBP13.32□□□□□ -0.28
COPS3-202ENST00000417352 BAZ1BQ9UIG0 1483 aaKnown RBP13.31□□□□□ -0.28
COPS3-202ENST00000417352 BAZ1AQ9NRL2 1556 aaPredicted RBP13.31□□□□□ -0.28
COPS3-202ENST00000417352 DNAJC5Q9H3Z4 198 aa13.3□□□□□ -0.28
COPS3-202ENST00000417352 HMGXB3Q12766 1538 aa13.28□□□□□ -0.28
COPS3-202ENST00000417352 NESP48681 1621 aa13.27□□□□□ -0.29
COPS3-202ENST00000417352 CUX2O14529 1486 aa13.24□□□□□ -0.29
COPS3-202ENST00000417352 MROH2BQ7Z745 1585 aa13.23□□□□□ -0.29
COPS3-202ENST00000417352 RNF39Q9H2S5 420 aa13.18□□□□□ -0.3
COPS3-202ENST00000417352 PEG3Q9GZU2 1588 aa13.15□□□□□ -0.3
COPS3-202ENST00000417352 LAMC3Q9Y6N6 1575 aa13.11□□□□□ -0.31
COPS3-202ENST00000417352 NCBP3Q53F19 620 aaKnown RBP13.11□□□□□ -0.31
COPS3-202ENST00000417352 WIZO95785 1651 aa13.11□□□□□ -0.31
COPS3-202ENST00000417352 KIF21AQ7Z4S6 1674 aa13.09□□□□□ -0.31
COPS3-202ENST00000417352 PDS5BQ9NTI5 1447 aa13.09□□□□□ -0.31
COPS3-202ENST00000417352 THOC2Q8NI27 1593 aaKnown RBP13.05□□□□□ -0.32
COPS3-202ENST00000417352 CADPSQ9ULU8 1353 aa13.04□□□□□ -0.32
COPS3-202ENST00000417352 C1QBPQ07021 282 aaKnown RBP12.99□□□□□ -0.33
COPS3-202ENST00000417352 MRC2Q9UBG0 1479 aa12.95□□□□□ -0.34
COPS3-202ENST00000417352 RSF1Q96T23 1441 aaPredicted RBP12.95□□□□□ -0.34
COPS3-202ENST00000417352 CEP164Q9UPV0 1460 aa12.92□□□□□ -0.34
COPS3-202ENST00000417352 NPM3O75607 178 aaKnown RBP12.92□□□□□ -0.34
COPS3-202ENST00000417352 FANCD2Q9BXW9 1451 aa12.91□□□□□ -0.34
COPS3-202ENST00000417352 TRIM41Q8WV44 630 aa12.89□□□□□ -0.35
COPS3-202ENST00000417352 TOP2AP11388 1531 aaKnown RBP12.88□□□□□ -0.35
COPS3-202ENST00000417352 WDR62O43379 1518 aa12.87□□□□□ -0.35
COPS3-202ENST00000417352 CFTRP13569 1480 aa12.85□□□□□ -0.35
COPS3-202ENST00000417352 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.83□□□□□ -0.36
COPS3-202ENST00000417352 CCDC88BA6NC98 1476 aa12.78□□□□□ -0.36
COPS3-202ENST00000417352 OSCARQ8IYS5 282 aa12.77□□□□□ -0.37
COPS3-202ENST00000417352 URB2Q14146 1524 aaKnown RBP12.77□□□□□ -0.37
COPS3-202ENST00000417352 PRDM2Q13029 1718 aa12.74□□□□□ -0.37
COPS3-202ENST00000417352 FBLN2P98095 1184 aa12.65□□□□□ -0.38
COPS3-202ENST00000417352 TOPBP1Q92547 1522 aa12.64□□□□□ -0.39
COPS3-202ENST00000417352 ZNF608Q9ULD9 1512 aaPredicted RBP12.64□□□□□ -0.39
COPS3-202ENST00000417352 IFT140Q96RY7 1462 aa12.64□□□□□ -0.39
COPS3-202ENST00000417352 ABCC8Q09428 1581 aa12.61□□□□□ -0.39
COPS3-202ENST00000417352 SUPT5HO00267 1087 aaKnown RBP12.61□□□□□ -0.39
COPS3-202ENST00000417352 KCNA4P22459 653 aa12.59□□□□□ -0.39
COPS3-202ENST00000417352 DNMBPQ6XZF7 1577 aa12.59□□□□□ -0.39
COPS3-202ENST00000417352 AQRO60306 1485 aaKnown RBP eCLIP12.57□□□□□ -0.4
COPS3-202ENST00000417352 EIF4G3O43432 1585 aaKnown RBP12.56□□□□□ -0.4
COPS3-202ENST00000417352 U3KPZ7 1027 aaPredicted RBP12.54□□□□□ -0.4
COPS3-202ENST00000417352 RIMBP3CA6NJZ7 1639 aa12.52□□□□□ -0.4
COPS3-202ENST00000417352 RIMBP3BA6NNM3 1639 aa12.52□□□□□ -0.4
COPS3-202ENST00000417352 RIMBP3Q9UFD9 1639 aa12.52□□□□□ -0.4
COPS3-202ENST00000417352 CYB5RLQ6IPT4 315 aa12.52□□□□□ -0.41
COPS3-202ENST00000417352 TDRD9Q8NDG6 1382 aaKnown RBP12.52□□□□□ -0.41
COPS3-202ENST00000417352 SOGA1O94964 1423 aa12.52□□□□□ -0.41
COPS3-202ENST00000417352 RAD54L2Q9Y4B4 1467 aa12.52□□□□□ -0.41
COPS3-202ENST00000417352 POLA1P09884 1462 aaPredicted RBP12.51□□□□□ -0.41
COPS3-202ENST00000417352 CHD1O14646 1710 aa12.51□□□□□ -0.41
COPS3-202ENST00000417352 TARBP1Q13395 1621 aaKnown RBP12.5□□□□□ -0.41
COPS3-202ENST00000417352 CHMP7Q8WUX9 453 aaPredicted RBP12.47□□□□□ -0.41
COPS3-202ENST00000417352 ARHGEF11O15085 1522 aa12.47□□□□□ -0.41
COPS3-202ENST00000417352 TRHP20396 242 aaPredicted RBP12.46□□□□□ -0.41
COPS3-202ENST00000417352 FGD5Q6ZNL6 1462 aa12.46□□□□□ -0.42
COPS3-202ENST00000417352 CUX1P39880 1505 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms